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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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Fusion gene ID: 19727

FusionGeneSummary for LIMCH1_LIMCH1

check button Fusion gene summary
Fusion gene informationFusion gene name: LIMCH1_LIMCH1
Fusion gene ID: 19727
HgeneTgene
Gene symbol

LIMCH1

LIMCH1

Gene ID

22998

22998

Gene nameLIM and calponin homology domains 1LIM and calponin homology domains 1
SynonymsLIMCH1A|LMO7BLIMCH1A|LMO7B
Cytomap

4p13

4p13

Type of geneprotein-codingprotein-coding
DescriptionLIM and calponin homology domains-containing protein 1LIM and calponin homology domains-containing protein 1
Modification date2018051920180519
UniProtAcc

Q9UPQ0

Q9UPQ0

Ensembl transtripts involved in fusion geneENST00000513024, ENST00000509638, 
ENST00000508501, ENST00000512946, 
ENST00000313860, ENST00000512632, 
ENST00000512820, ENST00000503057, 
ENST00000511496, ENST00000514096, 
ENST00000509277, ENST00000396595, 
ENST00000381753, ENST00000509454, 
ENST00000515785, 
ENST00000513024, 
ENST00000509638, ENST00000508501, 
ENST00000512946, ENST00000313860, 
ENST00000512632, ENST00000512820, 
ENST00000503057, ENST00000511496, 
ENST00000514096, ENST00000509277, 
ENST00000396595, ENST00000381753, 
ENST00000509454, ENST00000515785, 
Fusion gene scores* DoF score10 X 8 X 6=48010 X 10 X 6=600
# samples 1310
** MAII scorelog2(13/480*10)=-1.88452278258006
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(10/600*10)=-2.58496250072116
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: LIMCH1 [Title/Abstract] AND LIMCH1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BU675776LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
3UTR-intronENST00000513024ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000513024ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000513024ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000513024ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000513024ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000513024ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000513024ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000513024ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000513024ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000513024ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000513024ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000513024ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000513024ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000513024ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000513024ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509638ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509638ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509638ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509638ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000509638ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509638ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509638ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509638ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509638ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509638ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509638ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000509638ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000509638ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509638ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509638ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000508501ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000508501ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000508501ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000508501ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000508501ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000508501ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000508501ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000508501ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000508501ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000508501ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000508501ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000508501ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000508501ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000508501ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000508501ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512946ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512946ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512946ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512946ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000512946ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512946ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512946ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512946ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512946ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512946ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512946ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000512946ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000512946ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512946ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512946ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000313860ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000313860ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000313860ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000313860ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000313860ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000313860ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000313860ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000313860ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000313860ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000313860ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000313860ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000313860ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000313860ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000313860ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000313860ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512632ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512632ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512632ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512632ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000512632ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512632ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512632ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512632ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512632ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512632ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512632ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000512632ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000512632ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512632ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512632ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512820ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512820ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512820ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512820ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000512820ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512820ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512820ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512820ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512820ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512820ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512820ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000512820ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000512820ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512820ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000512820ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000503057ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000503057ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000503057ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000503057ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000503057ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000503057ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000503057ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000503057ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000503057ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000503057ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000503057ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000503057ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000503057ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000503057ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000503057ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000511496ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000511496ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000511496ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000511496ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000511496ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000511496ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000511496ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000511496ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000511496ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000511496ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000511496ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000511496ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000511496ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000511496ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000511496ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000514096ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000514096ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000514096ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000514096ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000514096ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000514096ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000514096ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000514096ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000514096ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000514096ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000514096ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000514096ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000514096ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000514096ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000514096ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509277ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509277ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509277ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509277ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000509277ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509277ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509277ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509277ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509277ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509277ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509277ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000509277ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000509277ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509277ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509277ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000396595ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000396595ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000396595ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000396595ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000396595ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000396595ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000396595ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000396595ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000396595ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000396595ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000396595ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000396595ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000396595ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000396595ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000396595ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000381753ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000381753ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000381753ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000381753ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000381753ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000381753ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000381753ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000381753ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000381753ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000381753ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000381753ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000381753ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-3UTRENST00000381753ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000381753ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
3UTR-intronENST00000381753ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509454ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509454ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509454ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509454ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000509454ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509454ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509454ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509454ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509454ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509454ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509454ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000509454ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000509454ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509454ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000509454ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000515785ENST00000513024LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000515785ENST00000509638LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000515785ENST00000508501LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000515785ENST00000512946LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000515785ENST00000313860LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000515785ENST00000512632LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000515785ENST00000512820LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000515785ENST00000503057LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000515785ENST00000511496LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000515785ENST00000514096LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000515785ENST00000509277LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000515785ENST00000396595LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-3UTRENST00000515785ENST00000381753LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000515785ENST00000509454LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+
intron-intronENST00000515785ENST00000515785LIMCH1chr4

41700910

-LIMCH1chr4

41701411

+

Top

FusionProtFeatures for LIMCH1_LIMCH1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
LIMCH1

Q9UPQ0

LIMCH1

Q9UPQ0


check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


Top

FusionGeneSequence for LIMCH1_LIMCH1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

Top

FusionGenePPI for LIMCH1_LIMCH1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for LIMCH1_LIMCH1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for LIMCH1_LIMCH1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneLIMCH1C0236969Substance-Related Disorders1CTD_human
HgeneLIMCH1C0345967Malignant mesothelioma1CTD_human
TgeneLIMCH1C0236969Substance-Related Disorders1CTD_human
TgeneLIMCH1C0345967Malignant mesothelioma1CTD_human