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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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Fusion gene ID: 19724

FusionGeneSummary for LIMCH1_DNM1L

check button Fusion gene summary
Fusion gene informationFusion gene name: LIMCH1_DNM1L
Fusion gene ID: 19724
HgeneTgene
Gene symbol

LIMCH1

DNM1L

Gene ID

22998

10059

Gene nameLIM and calponin homology domains 1dynamin 1 like
SynonymsLIMCH1A|LMO7BDLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5
Cytomap

4p13

12p11.21

Type of geneprotein-codingprotein-coding
DescriptionLIM and calponin homology domains-containing protein 1dynamin-1-like proteinDnm1p/Vps1p-like proteindynamin family member proline-rich carboxyl-terminal domain lessdynamin-like protein 4dynamin-like protein IVdynamin-related protein 1
Modification date2018051920180523
UniProtAcc

Q9UPQ0

O00429

Ensembl transtripts involved in fusion geneENST00000513024, ENST00000509638, 
ENST00000508501, ENST00000512946, 
ENST00000313860, ENST00000512632, 
ENST00000512820, ENST00000503057, 
ENST00000511496, ENST00000514096, 
ENST00000509277, ENST00000396595, 
ENST00000381753, ENST00000509454, 
ENST00000515785, 
ENST00000452533, 
ENST00000553257, ENST00000549701, 
ENST00000358214, ENST00000548671, 
ENST00000266481, ENST00000547312, 
ENST00000414834, ENST00000381000, 
Fusion gene scores* DoF score10 X 8 X 6=4807 X 6 X 7=294
# samples 138
** MAII scorelog2(13/480*10)=-1.88452278258006
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(8/294*10)=-1.877744249949
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: LIMCH1 [Title/Abstract] AND DNM1L [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneDNM1L

GO:0000266

mitochondrial fission

23530241

TgeneDNM1L

GO:0003374

dynamin family protein polymerization involved in mitochondrial fission

11514614|23530241

TgeneDNM1L

GO:0016559

peroxisome fission

12618434

TgeneDNM1L

GO:0032459

regulation of protein oligomerization

20850011

TgeneDNM1L

GO:0050714

positive regulation of protein secretion

9570752

TgeneDNM1L

GO:0051289

protein homotetramerization

18353969

TgeneDNM1L

GO:0061025

membrane fusion

20850011

TgeneDNM1L

GO:0090149

mitochondrial membrane fission

11514614


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVPRADTCGA-EJ-7793-01ALIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
TCGALDPRADTCGA-EJ-7793-01ALIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000513024ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000513024ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000513024ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000513024ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000513024ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000513024ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000513024ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000513024ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000513024ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509638ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509638ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509638ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509638ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509638ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509638ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509638ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509638ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509638ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000508501ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000508501ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000508501ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000508501ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000508501ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000508501ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000508501ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000508501ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000508501ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512946ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512946ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512946ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512946ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512946ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512946ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512946ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512946ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512946ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000313860ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000313860ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000313860ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000313860ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000313860ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000313860ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000313860ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000313860ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000313860ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512632ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512632ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512632ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512632ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512632ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512632ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512632ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512632ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512632ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512820ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512820ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512820ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512820ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512820ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512820ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512820ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512820ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000512820ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000503057ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000503057ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000503057ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000503057ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000503057ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000503057ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000503057ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000503057ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000503057ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000511496ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000511496ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000511496ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000511496ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000511496ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000511496ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000511496ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000511496ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000511496ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000514096ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000514096ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000514096ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000514096ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000514096ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000514096ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000514096ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000514096ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000514096ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509277ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509277ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509277ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509277ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509277ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509277ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509277ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509277ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509277ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000396595ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000396595ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000396595ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000396595ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000396595ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000396595ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000396595ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000396595ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000396595ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000381753ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000381753ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000381753ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000381753ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000381753ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000381753ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000381753ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000381753ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
5CDS-intronENST00000381753ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509454ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509454ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509454ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509454ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509454ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509454ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509454ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509454ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000509454ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000515785ENST00000452533LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000515785ENST00000553257LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000515785ENST00000549701LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000515785ENST00000358214LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000515785ENST00000548671LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000515785ENST00000266481LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000515785ENST00000547312LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000515785ENST00000414834LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-intronENST00000515785ENST00000381000LIMCH1chr4

41702059

+DNM1Lchr12

32905677

+
intron-3CDSENST00000513024ENST00000452533LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-3CDSENST00000513024ENST00000553257LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-3CDSENST00000513024ENST00000549701LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-3CDSENST00000513024ENST00000358214LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-intronENST00000513024ENST00000548671LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-intronENST00000513024ENST00000266481LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-intronENST00000513024ENST00000547312LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-intronENST00000513024ENST00000414834LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-intronENST00000513024ENST00000381000LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
5UTR-3CDSENST00000509638ENST00000452533LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
5UTR-3CDSENST00000509638ENST00000553257LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
5UTR-3CDSENST00000509638ENST00000549701LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
5UTR-3CDSENST00000509638ENST00000358214LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
5UTR-intronENST00000509638ENST00000548671LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
5UTR-intronENST00000509638ENST00000266481LIMCH1chr4

41362953

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32875361

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5UTR-intronENST00000509638ENST00000547312LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
5UTR-intronENST00000509638ENST00000414834LIMCH1chr4

41362953

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32875361

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5UTR-intronENST00000509638ENST00000381000LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000508501ENST00000452533LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000508501ENST00000553257LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000508501ENST00000549701LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000508501ENST00000358214LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000508501ENST00000548671LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000508501ENST00000266481LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000508501ENST00000547312LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000508501ENST00000414834LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000508501ENST00000381000LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000512946ENST00000452533LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000512946ENST00000553257LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000512946ENST00000549701LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000512946ENST00000358214LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000512946ENST00000548671LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000512946ENST00000266481LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000512946ENST00000547312LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000512946ENST00000414834LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000512946ENST00000381000LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000313860ENST00000452533LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000313860ENST00000553257LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000313860ENST00000549701LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000313860ENST00000358214LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000313860ENST00000548671LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000313860ENST00000266481LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000313860ENST00000547312LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000313860ENST00000414834LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000313860ENST00000381000LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000512632ENST00000452533LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000512632ENST00000553257LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000512632ENST00000549701LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000512632ENST00000358214LIMCH1chr4

41362953

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5CDS-intronENST00000512632ENST00000548671LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000512632ENST00000266481LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000512632ENST00000547312LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000512632ENST00000414834LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000512632ENST00000381000LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000512820ENST00000452533LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000512820ENST00000553257LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000512820ENST00000549701LIMCH1chr4

41362953

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32875361

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Frame-shiftENST00000512820ENST00000358214LIMCH1chr4

41362953

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5CDS-intronENST00000512820ENST00000548671LIMCH1chr4

41362953

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5CDS-intronENST00000512820ENST00000266481LIMCH1chr4

41362953

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5CDS-intronENST00000512820ENST00000547312LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000512820ENST00000414834LIMCH1chr4

41362953

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32875361

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5CDS-intronENST00000512820ENST00000381000LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000503057ENST00000452533LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000503057ENST00000553257LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000503057ENST00000549701LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000503057ENST00000358214LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-intronENST00000503057ENST00000548671LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-intronENST00000503057ENST00000266481LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-intronENST00000503057ENST00000547312LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-intronENST00000503057ENST00000414834LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-intronENST00000503057ENST00000381000LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-3CDSENST00000511496ENST00000452533LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-3CDSENST00000511496ENST00000553257LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-3CDSENST00000511496ENST00000549701LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-3CDSENST00000511496ENST00000358214LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-intronENST00000511496ENST00000548671LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-intronENST00000511496ENST00000266481LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-intronENST00000511496ENST00000547312LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-intronENST00000511496ENST00000414834LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-intronENST00000511496ENST00000381000LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000514096ENST00000452533LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000514096ENST00000553257LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000514096ENST00000549701LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000514096ENST00000358214LIMCH1chr4

41362953

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32875361

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intron-intronENST00000514096ENST00000548671LIMCH1chr4

41362953

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32875361

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intron-intronENST00000514096ENST00000266481LIMCH1chr4

41362953

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32875361

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intron-intronENST00000514096ENST00000547312LIMCH1chr4

41362953

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32875361

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intron-intronENST00000514096ENST00000414834LIMCH1chr4

41362953

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32875361

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intron-intronENST00000514096ENST00000381000LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000509277ENST00000452533LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-3CDSENST00000509277ENST00000553257LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-3CDSENST00000509277ENST00000549701LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000509277ENST00000358214LIMCH1chr4

41362953

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32875361

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intron-intronENST00000509277ENST00000548671LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-intronENST00000509277ENST00000266481LIMCH1chr4

41362953

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32875361

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intron-intronENST00000509277ENST00000547312LIMCH1chr4

41362953

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32875361

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intron-intronENST00000509277ENST00000414834LIMCH1chr4

41362953

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32875361

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intron-intronENST00000509277ENST00000381000LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000396595ENST00000452533LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000396595ENST00000553257LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000396595ENST00000549701LIMCH1chr4

41362953

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32875361

+
intron-3CDSENST00000396595ENST00000358214LIMCH1chr4

41362953

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32875361

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intron-intronENST00000396595ENST00000548671LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-intronENST00000396595ENST00000266481LIMCH1chr4

41362953

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32875361

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intron-intronENST00000396595ENST00000547312LIMCH1chr4

41362953

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32875361

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intron-intronENST00000396595ENST00000414834LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-intronENST00000396595ENST00000381000LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000381753ENST00000452533LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-3CDSENST00000381753ENST00000553257LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000381753ENST00000549701LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000381753ENST00000358214LIMCH1chr4

41362953

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32875361

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intron-intronENST00000381753ENST00000548671LIMCH1chr4

41362953

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32875361

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intron-intronENST00000381753ENST00000266481LIMCH1chr4

41362953

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32875361

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intron-intronENST00000381753ENST00000547312LIMCH1chr4

41362953

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32875361

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intron-intronENST00000381753ENST00000414834LIMCH1chr4

41362953

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32875361

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intron-intronENST00000381753ENST00000381000LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000509454ENST00000452533LIMCH1chr4

41362953

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intron-3CDSENST00000509454ENST00000553257LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000509454ENST00000549701LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000509454ENST00000358214LIMCH1chr4

41362953

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32875361

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intron-intronENST00000509454ENST00000548671LIMCH1chr4

41362953

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intron-intronENST00000509454ENST00000266481LIMCH1chr4

41362953

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32875361

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intron-intronENST00000509454ENST00000547312LIMCH1chr4

41362953

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32875361

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intron-intronENST00000509454ENST00000414834LIMCH1chr4

41362953

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32875361

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intron-intronENST00000509454ENST00000381000LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000515785ENST00000452533LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000515785ENST00000553257LIMCH1chr4

41362953

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32875361

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intron-3CDSENST00000515785ENST00000549701LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-3CDSENST00000515785ENST00000358214LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-intronENST00000515785ENST00000548671LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-intronENST00000515785ENST00000266481LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+
intron-intronENST00000515785ENST00000547312LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-intronENST00000515785ENST00000414834LIMCH1chr4

41362953

+DNM1Lchr12

32875361

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intron-intronENST00000515785ENST00000381000LIMCH1chr4

41362953

+DNM1Lchr12

32875361

+

Top

FusionProtFeatures for LIMCH1_DNM1L


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
LIMCH1

Q9UPQ0

DNM1L

O00429


check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for LIMCH1_DNM1L


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for LIMCH1_DNM1L


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
LIMCH1ELAVL1, SH3KBP1, APP, HUWE1, CUTC, DIABLO, GABPA, KPNA1, NPM1, TRMT61A, RPA3, RPA2, RPA1, OTUD6B, KLHL15, RFC2, YES1, NAGK, GNB4, UNK, NTRK1, CEP120, ODF2, XPO1, CAPZA2, CDK2, MYH9, PPP1CB, IQGAP1, ANLN, MYO19, MYO18A, CDH1, TRIM25DNM1LGSK3B, FIS1, PEX11A, PEX11B, PEX11G, PARK2, GABRR1, MUL1, COPS5, LRRK2, MIEF1, PEX14, MARCH5, DNM1L, MFF, MIEF2, SOX2, APEH, CYHR1, CARS, ARFIP1, ATP6V1C1, TBC1D15, FAM129B, JMJD6, PSMG3, SEC24A, SSB, VPS26A, EGFR, MAGEA1, MAGEA3, RRM2, SCG3, SH3GL1, ZBTB24, FZR1, HAX1, NUFIP1, DGUOK, DNAAF2, FGL1, UNK, ATIC, TES, NTRK1, PINK1, LLGL2, PPIA, CDCA5, SNW1, CDC5L, CPNE2, CA14, DUSP23, MYL12A, PFN1, LDHB, RPL30, DBN1, NME1, CKB, TPI1, ALDOA, SAP18, CCT8, RPL12, TXN, EEF2, YWHAE, YWHAZ, YWHAB, HPRT1, CCT2, ARF1, LDHA, EIF5A, RPL27, MDH2, PRDX6, PSMC5, HNRNPA1L2, EEF1B2, PRDX2, RUVBL2, PSMC3, UBA1, EEF1G, TIMM13, VCP, RUVBL1, SF3B6, ACTN4, TPM1, SUB1, XRCC6, HSD17B10, HNRNPAB, PABPC1, HSPA4, HNRNPDL, ILF2, C14orf166, EEF1D, PAICS, YWHAQ, AHCY, PDIA6, STIP1, HSP90B1, IMPDH2, RNPS1, TAGLN2, ACLY, KPNB1, PGAM1, CDC37, PCMT1, NAP1L1, RPL28, ACTR1A, SUMO2, CCT7, TKT, EIF3F, ERH, SERBP1, RBBP4, PARK7, DCD, PSMC6, RANBP1, RARS, PTBP1, UBE2L3, EIF4A3, PDHB, PSMA4, RPA3, PLS3, GFAP, PSMC2, NACA, KCTD12, PSMC1, TRIM28, DNAJA1, HSPH1, HNRNPH3, DCTN2, RBM8A, SAE1, PRMT1, MTHFD1, PSMD2, RBMXL2, EIF2S1, EIF3D, ACTN1, SKP1, FASN, XRCC5, EZR, EIF3B, PFDN2, AHSA1, DDX21, DARS, PNN, BUB3, ACIN1, MYH11, RCC1, EIF3A, DDX39B, PSMC4, DYNC1H1, CDK1, LARS, MAT2A, TLN1, ABCE1, GANAB, CAPRIN1, IQGAP1, SAFB, SOD1, HIST1H2AE, HIST1H2AB, CKMT1B, CKMT1A, CALM1, CALM2, CALM3


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for LIMCH1_DNM1L


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for LIMCH1_DNM1L


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneLIMCH1C0236969Substance-Related Disorders1CTD_human
HgeneLIMCH1C0345967Malignant mesothelioma1CTD_human
TgeneDNM1LC3280660ENCEPHALOPATHY, LETHAL, DUE TO DEFECTIVE MITOCHONDRIAL AND PEROXISOMAL FISSION2ORPHANET;UNIPROT
TgeneDNM1LC0001125Acidosis, Lactic1CTD_human;HPO
TgeneDNM1LC0025958Microcephaly1CTD_human
TgeneDNM1LC0029124Optic Atrophy1CTD_human;HPO
TgeneDNM1LC0151744Myocardial Ischemia1CTD_human
TgeneDNM1LC0162666Mitochondrial Encephalomyopathies1CTD_human