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Fusion gene ID: 19723 |
FusionGeneSummary for LIMCH1_CWH43 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: LIMCH1_CWH43 | Fusion gene ID: 19723 | Hgene | Tgene | Gene symbol | LIMCH1 | CWH43 | Gene ID | 22998 | 80157 |
| Gene name | LIM and calponin homology domains 1 | cell wall biogenesis 43 C-terminal homolog | |
| Synonyms | LIMCH1A|LMO7B | CWH43-C|PGAP2IP | |
| Cytomap | 4p13 | 4p11 | |
| Type of gene | protein-coding | protein-coding | |
| Description | LIM and calponin homology domains-containing protein 1 | PGAP2-interacting proteincell wall biogenesis protein 43 C-terminal homolog | |
| Modification date | 20180519 | 20180523 | |
| UniProtAcc | Q9UPQ0 | Q9H720 | |
| Ensembl transtripts involved in fusion gene | ENST00000513024, ENST00000509638, ENST00000508501, ENST00000512946, ENST00000313860, ENST00000512632, ENST00000512820, ENST00000503057, ENST00000511496, ENST00000514096, ENST00000509277, ENST00000396595, ENST00000381753, ENST00000509454, ENST00000515785, | ENST00000226432, ENST00000513409, | |
| Fusion gene scores | * DoF score | 10 X 8 X 6=480 | 3 X 3 X 3=27 |
| # samples | 13 | 3 | |
| ** MAII score | log2(13/480*10)=-1.88452278258006 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: LIMCH1 [Title/Abstract] AND CWH43 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | BLCA | TCGA-CU-A5W6-01A | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5UTR-3CDS | ENST00000513024 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| 5UTR-3CDS | ENST00000513024 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| 5UTR-3CDS | ENST00000509638 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| 5UTR-3CDS | ENST00000509638 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| In-frame | ENST00000508501 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| In-frame | ENST00000508501 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| In-frame | ENST00000512946 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| In-frame | ENST00000512946 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| In-frame | ENST00000313860 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| In-frame | ENST00000313860 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| In-frame | ENST00000512632 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| In-frame | ENST00000512632 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| In-frame | ENST00000512820 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| In-frame | ENST00000512820 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000503057 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000503057 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000511496 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000511496 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000514096 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000514096 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000509277 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000509277 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000396595 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000396595 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000381753 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000381753 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000509454 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000509454 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000515785 | ENST00000226432 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
| intron-3CDS | ENST00000515785 | ENST00000513409 | LIMCH1 | chr4 | 41526495 | + | CWH43 | chr4 | 49030646 | + |
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FusionProtFeatures for LIMCH1_CWH43 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| LIMCH1 | CWH43 |
| Involved in lipid remodeling during GPI-anchormaturation. {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for LIMCH1_CWH43 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_LIMCH1_ENST00000508501_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_357aa MACPALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLAPTKEVSAAIW PFRFGYDNEGWSSLERSAHLLNETGADFITILESDASKPYMGNNDLTMWLGEKLGFYTDFGPSTRYHTWGIMALSRYPIVKSEHHLLPSP EGEIAPAITLTVNISGKLVDFVVTHFGNHEDDLDRKLQAIAVSKLLKSSSNQVIFLGYITSAPGSRDYLQLTEHGNVKDIDSTDHDRWCE >In-frame_LIMCH1_ENST00000508501_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_357aa MACPALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLAPTKEVSAAIW PFRFGYDNEGWSSLERSAHLLNETGADFITILESDASKPYMGNNDLTMWLGEKLGFYTDFGPSTRYHTWGIMALSRYPIVKSEHHLLPSP EGEIAPAITLTVNISGKLVDFVVTHFGNHEDDLDRKLQAIAVSKLLKSSSNQVIFLGYITSAPGSRDYLQLTEHGNVKDIDSTDHDRWCE >In-frame_LIMCH1_ENST00000512946_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_357aa MACPALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLAPTKEVSAAIW PFRFGYDNEGWSSLERSAHLLNETGADFITILESDASKPYMGNNDLTMWLGEKLGFYTDFGPSTRYHTWGIMALSRYPIVKSEHHLLPSP EGEIAPAITLTVNISGKLVDFVVTHFGNHEDDLDRKLQAIAVSKLLKSSSNQVIFLGYITSAPGSRDYLQLTEHGNVKDIDSTDHDRWCE >In-frame_LIMCH1_ENST00000512946_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_357aa MACPALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLAPTKEVSAAIW PFRFGYDNEGWSSLERSAHLLNETGADFITILESDASKPYMGNNDLTMWLGEKLGFYTDFGPSTRYHTWGIMALSRYPIVKSEHHLLPSP EGEIAPAITLTVNISGKLVDFVVTHFGNHEDDLDRKLQAIAVSKLLKSSSNQVIFLGYITSAPGSRDYLQLTEHGNVKDIDSTDHDRWCE >In-frame_LIMCH1_ENST00000313860_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_357aa MACPALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLAPTKEVSAAIW PFRFGYDNEGWSSLERSAHLLNETGADFITILESDASKPYMGNNDLTMWLGEKLGFYTDFGPSTRYHTWGIMALSRYPIVKSEHHLLPSP EGEIAPAITLTVNISGKLVDFVVTHFGNHEDDLDRKLQAIAVSKLLKSSSNQVIFLGYITSAPGSRDYLQLTEHGNVKDIDSTDHDRWCE >In-frame_LIMCH1_ENST00000313860_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_357aa MACPALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLAPTKEVSAAIW PFRFGYDNEGWSSLERSAHLLNETGADFITILESDASKPYMGNNDLTMWLGEKLGFYTDFGPSTRYHTWGIMALSRYPIVKSEHHLLPSP EGEIAPAITLTVNISGKLVDFVVTHFGNHEDDLDRKLQAIAVSKLLKSSSNQVIFLGYITSAPGSRDYLQLTEHGNVKDIDSTDHDRWCE >In-frame_LIMCH1_ENST00000512632_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_357aa MACPALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLAPTKEVSAAIW PFRFGYDNEGWSSLERSAHLLNETGADFITILESDASKPYMGNNDLTMWLGEKLGFYTDFGPSTRYHTWGIMALSRYPIVKSEHHLLPSP EGEIAPAITLTVNISGKLVDFVVTHFGNHEDDLDRKLQAIAVSKLLKSSSNQVIFLGYITSAPGSRDYLQLTEHGNVKDIDSTDHDRWCE >In-frame_LIMCH1_ENST00000512632_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_357aa MACPALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLAPTKEVSAAIW PFRFGYDNEGWSSLERSAHLLNETGADFITILESDASKPYMGNNDLTMWLGEKLGFYTDFGPSTRYHTWGIMALSRYPIVKSEHHLLPSP EGEIAPAITLTVNISGKLVDFVVTHFGNHEDDLDRKLQAIAVSKLLKSSSNQVIFLGYITSAPGSRDYLQLTEHGNVKDIDSTDHDRWCE >In-frame_LIMCH1_ENST00000512820_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_357aa MACPALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLAPTKEVSAAIW PFRFGYDNEGWSSLERSAHLLNETGADFITILESDASKPYMGNNDLTMWLGEKLGFYTDFGPSTRYHTWGIMALSRYPIVKSEHHLLPSP EGEIAPAITLTVNISGKLVDFVVTHFGNHEDDLDRKLQAIAVSKLLKSSSNQVIFLGYITSAPGSRDYLQLTEHGNVKDIDSTDHDRWCE >In-frame_LIMCH1_ENST00000512820_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_357aa MACPALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKINRLPTPIAGLAPTKEVSAAIW PFRFGYDNEGWSSLERSAHLLNETGADFITILESDASKPYMGNNDLTMWLGEKLGFYTDFGPSTRYHTWGIMALSRYPIVKSEHHLLPSP EGEIAPAITLTVNISGKLVDFVVTHFGNHEDDLDRKLQAIAVSKLLKSSSNQVIFLGYITSAPGSRDYLQLTEHGNVKDIDSTDHDRWCE |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_LIMCH1_ENST00000508501_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_1071nt ATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGG ATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCT ATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGG CCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACA ATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTT GGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCA GAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAA GATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACT TCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAA TACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTT AGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCC >In-frame_LIMCH1_ENST00000508501_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_1071nt ATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGG ATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCT ATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGG CCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACA ATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTT GGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCA GAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAA GATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACT TCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAA TACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTT AGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCC >In-frame_LIMCH1_ENST00000512946_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_1071nt ATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGG ATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCT ATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGG CCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACA ATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTT GGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCA GAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAA GATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACT TCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAA TACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTT AGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCC >In-frame_LIMCH1_ENST00000512946_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_1071nt ATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGG ATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCT ATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGG CCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACA ATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTT GGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCA GAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAA GATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACT TCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAA TACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTT AGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCC >In-frame_LIMCH1_ENST00000313860_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_1071nt ATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGG ATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCT ATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGG CCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACA ATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTT GGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCA GAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAA GATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACT TCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAA TACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTT AGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCC >In-frame_LIMCH1_ENST00000313860_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_1071nt ATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGG ATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCT ATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGG CCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACA ATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTT GGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCA GAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAA GATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACT TCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAA TACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTT AGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCC >In-frame_LIMCH1_ENST00000512632_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_1071nt ATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGG ATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCT ATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGG CCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACA ATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTT GGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCA GAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAA GATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACT TCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAA TACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTT AGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCC >In-frame_LIMCH1_ENST00000512632_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_1071nt ATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGG ATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCT ATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGG CCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACA ATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTT GGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCA GAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAA GATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACT TCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAA TACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTT AGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCC >In-frame_LIMCH1_ENST00000512820_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_1071nt ATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGG ATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCT ATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGG CCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACA ATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTT GGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCA GAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAA GATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACT TCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAA TACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTT AGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCC >In-frame_LIMCH1_ENST00000512820_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_1071nt ATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGG ATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCT ATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGG CCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACA ATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTT GGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCA GAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAA GATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACT TCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAA TACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTT AGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_LIMCH1_ENST00000508501_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_1316nt GGCGACGGCGGCGGCCGTCCTCATCCCGGCGCTTGAGAGGACGCGGGGCTGCGCAAATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTC AGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGGATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATA AAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGAT TGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGGCCTTTCAGGTTTGGATATGACAATGAAGGGTGGT CTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACAATTTTGGAGAGTGATGCTTCTAAGCCCTATATGG GGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTTGGTCCAAGCACAAGGTATCACACTTGGGGGATTA TGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCAGAGGGCGAGATCGCACCAGCCATCACATTGACCG TTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAAGATGACCTCGACAGGAAACTGCAGGCTATTGCTG TTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACTTCAGCACCTGGCTCCAGAGATTATCTACAGCTCA CTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAATACATTATGTATCGAGGGCTGATCAGGTTGGGTT ATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTTAGGATCCCTGATGACCCCACTAATTATAGAGACA ACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCCAGATTTGGATCCTACAAAGAAGGACACAATTATG AAAACAACCATCATTTTCATATGAATACTCCCAAATACTTTTTATGAAACATTTAAAACAAGAAGTTATTGGCTGGGAAAATCTAAGAAA AAAAGTATGTAAGATAAAAAGAAGAGATTAATGAAAGTGGGAAAATACACATGAAGAACCTCAACTTAAAAAACACATGGTATCTATGCA >In-frame_LIMCH1_ENST00000508501_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_1313nt GGCGACGGCGGCGGCCGTCCTCATCCCGGCGCTTGAGAGGACGCGGGGCTGCGCAAATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTC AGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGGATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATA AAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGAT TGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGGCCTTTCAGGTTTGGATATGACAATGAAGGGTGGT CTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACAATTTTGGAGAGTGATGCTTCTAAGCCCTATATGG GGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTTGGTCCAAGCACAAGGTATCACACTTGGGGGATTA TGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCAGAGGGCGAGATCGCACCAGCCATCACATTGACCG TTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAAGATGACCTCGACAGGAAACTGCAGGCTATTGCTG TTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACTTCAGCACCTGGCTCCAGAGATTATCTACAGCTCA CTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAATACATTATGTATCGAGGGCTGATCAGGTTGGGTT ATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTTAGGATCCCTGATGACCCCACTAATTATAGAGACA ACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCCAGATTTGGATCCTACAAAGAAGGACACAATTATG AAAACAACCATCATTTTCATATGAATACTCCCAAATACTTTTTATGAAACATTTAAAACAAGAAGTTATTGGCTGGGAAAATCTAAGAAA AAAAGTATGTAAGATAAAAAGAAGAGATTAATGAAAGTGGGAAAATACACATGAAGAACCTCAACTTAAAAAACACATGGTATCTATGCA >In-frame_LIMCH1_ENST00000512946_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_1316nt GGCGACGGCGGCGGCCGTCCTCATCCCGGCGCTTGAGAGGACGCGGGGCTGCGCAAATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTC AGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGGATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATA AAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGAT TGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGGCCTTTCAGGTTTGGATATGACAATGAAGGGTGGT CTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACAATTTTGGAGAGTGATGCTTCTAAGCCCTATATGG GGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTTGGTCCAAGCACAAGGTATCACACTTGGGGGATTA TGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCAGAGGGCGAGATCGCACCAGCCATCACATTGACCG TTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAAGATGACCTCGACAGGAAACTGCAGGCTATTGCTG TTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACTTCAGCACCTGGCTCCAGAGATTATCTACAGCTCA CTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAATACATTATGTATCGAGGGCTGATCAGGTTGGGTT ATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTTAGGATCCCTGATGACCCCACTAATTATAGAGACA ACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCCAGATTTGGATCCTACAAAGAAGGACACAATTATG AAAACAACCATCATTTTCATATGAATACTCCCAAATACTTTTTATGAAACATTTAAAACAAGAAGTTATTGGCTGGGAAAATCTAAGAAA AAAAGTATGTAAGATAAAAAGAAGAGATTAATGAAAGTGGGAAAATACACATGAAGAACCTCAACTTAAAAAACACATGGTATCTATGCA >In-frame_LIMCH1_ENST00000512946_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_1313nt GGCGACGGCGGCGGCCGTCCTCATCCCGGCGCTTGAGAGGACGCGGGGCTGCGCAAATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTC AGCCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGGATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATA AAGATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGAT TGCCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGGCCTTTCAGGTTTGGATATGACAATGAAGGGTGGT CTAGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACAATTTTGGAGAGTGATGCTTCTAAGCCCTATATGG GGAACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTTGGTCCAAGCACAAGGTATCACACTTGGGGGATTA TGGCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCAGAGGGCGAGATCGCACCAGCCATCACATTGACCG TTAACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAAGATGACCTCGACAGGAAACTGCAGGCTATTGCTG TTTCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACTTCAGCACCTGGCTCCAGAGATTATCTACAGCTCA CTGAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAATACATTATGTATCGAGGGCTGATCAGGTTGGGTT ATGCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTTAGGATCCCTGATGACCCCACTAATTATAGAGACA ACCAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCCAGATTTGGATCCTACAAAGAAGGACACAATTATG AAAACAACCATCATTTTCATATGAATACTCCCAAATACTTTTTATGAAACATTTAAAACAAGAAGTTATTGGCTGGGAAAATCTAAGAAA AAAAGTATGTAAGATAAAAAGAAGAGATTAATGAAAGTGGGAAAATACACATGAAGAACCTCAACTTAAAAAACACATGGTATCTATGCA >In-frame_LIMCH1_ENST00000313860_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_1314nt CGACGGCGGCGGCCGTCCTCATCCCGGCGCTTGAGAGGACGCGGGGCTGCGCAAATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAG CCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGGATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAA GATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTG CCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGGCCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCT AGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACAATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGG AACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTTGGTCCAAGCACAAGGTATCACACTTGGGGGATTATG GCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCAGAGGGCGAGATCGCACCAGCCATCACATTGACCGTT AACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAAGATGACCTCGACAGGAAACTGCAGGCTATTGCTGTT TCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACTTCAGCACCTGGCTCCAGAGATTATCTACAGCTCACT GAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAATACATTATGTATCGAGGGCTGATCAGGTTGGGTTAT GCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTTAGGATCCCTGATGACCCCACTAATTATAGAGACAAC CAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCCAGATTTGGATCCTACAAAGAAGGACACAATTATGAA AACAACCATCATTTTCATATGAATACTCCCAAATACTTTTTATGAAACATTTAAAACAAGAAGTTATTGGCTGGGAAAATCTAAGAAAAA AAGTATGTAAGATAAAAAGAAGAGATTAATGAAAGTGGGAAAATACACATGAAGAACCTCAACTTAAAAAACACATGGTATCTATGCAGT >In-frame_LIMCH1_ENST00000313860_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_1311nt CGACGGCGGCGGCCGTCCTCATCCCGGCGCTTGAGAGGACGCGGGGCTGCGCAAATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAG CCCCTGCAGCCCGAGCCGCCCCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGGATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAA GATTTTCGGACAGGTTTAGAAAATGGAATCCTCCTCTGCGAGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTG CCTACCCCCATTGCAGGACTGGCACCAACCAAAGAGGTCTCTGCTGCCATCTGGCCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCT AGTCTAGAAAGATCAGCTCACCTGCTCAATGAAACAGGTGCAGATTTCATAACAATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGG AACAATGACTTAACCATGTGGCTAGGGGAAAAGTTGGGTTTCTATACAGACTTTGGTCCAAGCACAAGGTATCACACTTGGGGGATTATG GCTTTGTCAAGATACCCAATTGTGAAATCTGAGCATCACCTTCTTCCGTCACCAGAGGGCGAGATCGCACCAGCCATCACATTGACCGTT AACATTTCGGGCAAGCTGGTGGATTTTGTCGTGACACACTTTGGGAACCACGAAGATGACCTCGACAGGAAACTGCAGGCTATTGCTGTT TCAAAACTACTGAAAAGTAGCTCTAATCAAGTGATATTTCTGGGATATATCACTTCAGCACCTGGCTCCAGAGATTATCTACAGCTCACT GAACATGGCAATGTGAAGGATATCGACAGCACTGATCATGACAGATGGTGTGAATACATTATGTATCGAGGGCTGATCAGGTTGGGTTAT GCAAGAATCTCCCATGCTGAACTGAGTGATTCAGAAATTCAGATGGCAAAATTTAGGATCCCTGATGACCCCACTAATTATAGAGACAAC CAGAAAGTGGTCATAGACCACAGAGAAGTTTCTGAGAAAATTCATTTTAATCCCAGATTTGGATCCTACAAAGAAGGACACAATTATGAA AACAACCATCATTTTCATATGAATACTCCCAAATACTTTTTATGAAACATTTAAAACAAGAAGTTATTGGCTGGGAAAATCTAAGAAAAA AAGTATGTAAGATAAAAAGAAGAGATTAATGAAAGTGGGAAAATACACATGAAGAACCTCAACTTAAAAAACACATGGTATCTATGCAGT >In-frame_LIMCH1_ENST00000512632_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_1294nt ATCCCGGCGCTTGAGAGGACGCGGGGCTGCGCAAATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCC CCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGGATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGA AAATGGAATCCTCCTCTGCGAGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACT GGCACCAACCAAAGAGGTCTCTGCTGCCATCTGGCCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCA CCTGCTCAATGAAACAGGTGCAGATTTCATAACAATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTG GCTAGGGGAAAAGTTGGGTTTCTATACAGACTTTGGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAAT TGTGAAATCTGAGCATCACCTTCTTCCGTCACCAGAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGT GGATTTTGTCGTGACACACTTTGGGAACCACGAAGATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAG CTCTAATCAAGTGATATTTCTGGGATATATCACTTCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGA TATCGACAGCACTGATCATGACAGATGGTGTGAATACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGA ACTGAGTGATTCAGAAATTCAGATGGCAAAATTTAGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCA CAGAGAAGTTTCTGAGAAAATTCATTTTAATCCCAGATTTGGATCCTACAAAGAAGGACACAATTATGAAAACAACCATCATTTTCATAT GAATACTCCCAAATACTTTTTATGAAACATTTAAAACAAGAAGTTATTGGCTGGGAAAATCTAAGAAAAAAAGTATGTAAGATAAAAAGA AGAGATTAATGAAAGTGGGAAAATACACATGAAGAACCTCAACTTAAAAAACACATGGTATCTATGCAGTGGGAAATTACCTCCATTTGT >In-frame_LIMCH1_ENST00000512632_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_1291nt ATCCCGGCGCTTGAGAGGACGCGGGGCTGCGCAAATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCC CCCCGAGCCCGCCTTCTCCGAGGCGCAGAAGTGGATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGA AAATGGAATCCTCCTCTGCGAGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACT GGCACCAACCAAAGAGGTCTCTGCTGCCATCTGGCCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCA CCTGCTCAATGAAACAGGTGCAGATTTCATAACAATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTG GCTAGGGGAAAAGTTGGGTTTCTATACAGACTTTGGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAAT TGTGAAATCTGAGCATCACCTTCTTCCGTCACCAGAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGT GGATTTTGTCGTGACACACTTTGGGAACCACGAAGATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAG CTCTAATCAAGTGATATTTCTGGGATATATCACTTCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGA TATCGACAGCACTGATCATGACAGATGGTGTGAATACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGA ACTGAGTGATTCAGAAATTCAGATGGCAAAATTTAGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCA CAGAGAAGTTTCTGAGAAAATTCATTTTAATCCCAGATTTGGATCCTACAAAGAAGGACACAATTATGAAAACAACCATCATTTTCATAT GAATACTCCCAAATACTTTTTATGAAACATTTAAAACAAGAAGTTATTGGCTGGGAAAATCTAAGAAAAAAAGTATGTAAGATAAAAAGA AGAGATTAATGAAAGTGGGAAAATACACATGAAGAACCTCAACTTAAAAAACACATGGTATCTATGCAGTGGGAAATTACCTCCATTTGT >In-frame_LIMCH1_ENST00000512820_chr4_41526495_+_CWH43_ENST00000226432_chr4_49030646_+_1286nt GCTTGAGAGGACGCGGGGCTGCGCAAATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGC CCGCCTTCTCCGAGGCGCAGAAGTGGATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAA TCCTCCTCTGCGAGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTGGCACCAA CCAAAGAGGTCTCTGCTGCCATCTGGCCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCACCTGCTCA ATGAAACAGGTGCAGATTTCATAACAATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTGGCTAGGGG AAAAGTTGGGTTTCTATACAGACTTTGGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAATTGTGAAAT CTGAGCATCACCTTCTTCCGTCACCAGAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGTGGATTTTG TCGTGACACACTTTGGGAACCACGAAGATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAGCTCTAATC AAGTGATATTTCTGGGATATATCACTTCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGATATCGACA GCACTGATCATGACAGATGGTGTGAATACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGAACTGAGTG ATTCAGAAATTCAGATGGCAAAATTTAGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCACAGAGAAG TTTCTGAGAAAATTCATTTTAATCCCAGATTTGGATCCTACAAAGAAGGACACAATTATGAAAACAACCATCATTTTCATATGAATACTC CCAAATACTTTTTATGAAACATTTAAAACAAGAAGTTATTGGCTGGGAAAATCTAAGAAAAAAAGTATGTAAGATAAAAAGAAGAGATTA ATGAAAGTGGGAAAATACACATGAAGAACCTCAACTTAAAAAACACATGGTATCTATGCAGTGGGAAATTACCTCCATTTGTAAACTATG >In-frame_LIMCH1_ENST00000512820_chr4_41526495_+_CWH43_ENST00000513409_chr4_49030646_+_1283nt GCTTGAGAGGACGCGGGGCTGCGCAAATGGCTTGTCCCGCTCTCGGTCTGGAAGCTCTTCAGCCCCTGCAGCCCGAGCCGCCCCCCGAGC CCGCCTTCTCCGAGGCGCAGAAGTGGATTGAGCAAGTAACTGGCAGAAGTTTTGGTGATAAAGATTTTCGGACAGGTTTAGAAAATGGAA TCCTCCTCTGCGAGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGACTGGCACCAA CCAAAGAGGTCTCTGCTGCCATCTGGCCTTTCAGGTTTGGATATGACAATGAAGGGTGGTCTAGTCTAGAAAGATCAGCTCACCTGCTCA ATGAAACAGGTGCAGATTTCATAACAATTTTGGAGAGTGATGCTTCTAAGCCCTATATGGGGAACAATGACTTAACCATGTGGCTAGGGG AAAAGTTGGGTTTCTATACAGACTTTGGTCCAAGCACAAGGTATCACACTTGGGGGATTATGGCTTTGTCAAGATACCCAATTGTGAAAT CTGAGCATCACCTTCTTCCGTCACCAGAGGGCGAGATCGCACCAGCCATCACATTGACCGTTAACATTTCGGGCAAGCTGGTGGATTTTG TCGTGACACACTTTGGGAACCACGAAGATGACCTCGACAGGAAACTGCAGGCTATTGCTGTTTCAAAACTACTGAAAAGTAGCTCTAATC AAGTGATATTTCTGGGATATATCACTTCAGCACCTGGCTCCAGAGATTATCTACAGCTCACTGAACATGGCAATGTGAAGGATATCGACA GCACTGATCATGACAGATGGTGTGAATACATTATGTATCGAGGGCTGATCAGGTTGGGTTATGCAAGAATCTCCCATGCTGAACTGAGTG ATTCAGAAATTCAGATGGCAAAATTTAGGATCCCTGATGACCCCACTAATTATAGAGACAACCAGAAAGTGGTCATAGACCACAGAGAAG TTTCTGAGAAAATTCATTTTAATCCCAGATTTGGATCCTACAAAGAAGGACACAATTATGAAAACAACCATCATTTTCATATGAATACTC CCAAATACTTTTTATGAAACATTTAAAACAAGAAGTTATTGGCTGGGAAAATCTAAGAAAAAAAGTATGTAAGATAAAAAGAAGAGATTA ATGAAAGTGGGAAAATACACATGAAGAACCTCAACTTAAAAAACACATGGTATCTATGCAGTGGGAAATTACCTCCATTTGTAAACTATG |
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FusionGenePPI for LIMCH1_CWH43 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| LIMCH1 | ELAVL1, SH3KBP1, APP, HUWE1, CUTC, DIABLO, GABPA, KPNA1, NPM1, TRMT61A, RPA3, RPA2, RPA1, OTUD6B, KLHL15, RFC2, YES1, NAGK, GNB4, UNK, NTRK1, CEP120, ODF2, XPO1, CAPZA2, CDK2, MYH9, PPP1CB, IQGAP1, ANLN, MYO19, MYO18A, CDH1, TRIM25 | CWH43 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for LIMCH1_CWH43 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for LIMCH1_CWH43 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | LIMCH1 | C0236969 | Substance-Related Disorders | 1 | CTD_human |
| Hgene | LIMCH1 | C0345967 | Malignant mesothelioma | 1 | CTD_human |
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