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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 19645

FusionGeneSummary for LGALS3BP_CLSPN

check button Fusion gene summary
Fusion gene informationFusion gene name: LGALS3BP_CLSPN
Fusion gene ID: 19645
HgeneTgene
Gene symbol

LGALS3BP

CLSPN

Gene ID

3959

63967

Gene namegalectin 3 binding proteinclaspin
Synonyms90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90-
Cytomap

17q25.3

1p34.3

Type of geneprotein-codingprotein-coding
Descriptiongalectin-3-binding proteinL3 antigenMAC2BPMac-2-binding proteinbasement membrane autoantigen p105lectin galactoside-binding soluble 3-binding proteinmac-2 BPserum protein 90Ktransport and golgi organization 10 homolog Btumor-associated antigen 90claspinclaspin homolog
Modification date2018052320180522
UniProtAcc

Q08380

Q9HAW4

Ensembl transtripts involved in fusion geneENST00000591778, ENST00000262776, 
ENST00000585407, 
ENST00000251195, 
ENST00000466308, ENST00000373220, 
ENST00000520551, ENST00000318121, 
Fusion gene scores* DoF score3 X 3 X 3=275 X 4 X 4=80
# samples 46
** MAII scorelog2(4/27*10)=0.567040592723894
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(6/80*10)=-0.415037499278844
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: LGALS3BP [Title/Abstract] AND CLSPN [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneCLSPN

GO:0007095

mitotic G2 DNA damage checkpoint

18662541

TgeneCLSPN

GO:0018105

peptidyl-serine phosphorylation

16885022

TgeneCLSPN

GO:0032147

activation of protein kinase activity

16885022


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVCESCTCGA-VS-A9UO-01ALGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000591778ENST00000251195LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000591778ENST00000466308LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000591778ENST00000373220LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000591778ENST00000520551LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000591778ENST00000318121LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000262776ENST00000251195LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000262776ENST00000466308LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000262776ENST00000373220LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000262776ENST00000520551LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000262776ENST00000318121LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000585407ENST00000251195LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000585407ENST00000466308LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000585407ENST00000373220LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000585407ENST00000520551LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-
intron-intronENST00000585407ENST00000318121LGALS3BPchr17

76967338

-CLSPNchr1

36214444

-

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FusionProtFeatures for LGALS3BP_CLSPN


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
LGALS3BP

Q08380

CLSPN

Q9HAW4

Promotes integrin-mediated cell adhesion. May stimulatehost defense against viruses and tumor cells.{ECO:0000269|PubMed:11146440, ECO:0000269|PubMed:8034587,ECO:0000269|PubMed:9501082}. Required for checkpoint mediated cell cycle arrest inresponse to inhibition of DNA replication or to DNA damage inducedby both ionizing and UV irradiation. Adapter protein which bindsto BRCA1 and the checkpoint kinase CHEK1 and facilitates the ATR-dependent phosphorylation of both proteins. Can also bindspecifically to branched DNA structures and may associate with S-phase chromatin following formation of the pre-replication complex(pre-RC). This may indicate a role for this protein as a sensorwhich monitors the integrity of DNA replication forks.{ECO:0000269|PubMed:12766152, ECO:0000269|PubMed:15096610,ECO:0000269|PubMed:15190204, ECO:0000269|PubMed:15226314,ECO:0000269|PubMed:15707391}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for LGALS3BP_CLSPN


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for LGALS3BP_CLSPN


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
LGALS3BPPHB2, LGALS3, LGALS1, H2AFX, HDAC5, FAF2, CUL3, CUL4A, CUL4B, CUL5, CUL2, CUL1, COPS5, DCUN1D1, CAND1, NEDD8, CD9, CD82, CD209, CD248, FBXO6, SYNCRIP, HSP90AA1, NOS2, SOX2, ATP4A, XRN1, DROSHA, SELE, CEP250, ACTB, BAG2, PRRC2C, CCT2, CCT3, CCT4, CCT5, CCT6A, CCT7, CCT8, CEP55, CRTC2, TUBB, HSPA1A, ENAH, TRAP1, RPL23, MOGS, GIGYF2, HNRNPU, HSP90AB1, HSPA5, HSPA8, HSPD1, IRS4, TUBGCP3, MAGED2, RAVER1, RPL38, RPS4X, TCP1, TUBA1A, TUBA1C, TUBB4B, XRN2, CUL7, OBSL1, CCDC8, SIGLEC9, LGALS3BP, SIGLEC5, SIGLEC10, SIGLEC6, SIGLEC7, SIGLEC11, NTRK1, ITGB1, ITGA5, ITGAV, ITGA6, PPME1, CAD, LAMB3, TUBG1, DYNLL1, PRPF4, SCAF11, VAPA, TUBGCP2, NCAPD3, TMEM63B, UGGT1, NEDD1, MZT1, NRD1, SURF4, RAE1, SEP15, MVP, PRSS21, MYCBP2, ZC3H3, GANAB, MYOF, NME7, TMEM161A, NKRF, VCPIP1, CEP290, SPRYD3, TUBGCP6, FBXO45, MZT2A, FOXA3, FOXG1, MCM2, ERBB3, GRB2, SHC1, UBASH3B, HECTD4, DNAJC13, HELZ2, GNE, C10orf2, TUBGCP4, FN1, TUBGCP5, FMR1, KIF7, BCKDK, FXR1, PHKB, MZT2B, ACACA, TRIM27, NEURL4, FXR2, HERC2, POLE, TRAPPC9, MIOS, PPHLN1, GPHN, TRAPPC10, LENG8, FAM120A, USP54, N4BP2L2, RGPD8, TYK2, FAM83H, UBE2A, BRCA1CLSPNBRCA1, CHEK1, ATR, RAD9A, USP7, PCNA, TIMELESS, USP28, BTRC, FBXW11, PLK1, MSH6, PMS2, LTA, RAD17, CDC7, CDK9, FZR1, CDC20, HERC2, CASP7, USP29, CEP250, GINS3, XPO1, GJB2, MPP1, MYH7, LTN1, USP20


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for LGALS3BP_CLSPN


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for LGALS3BP_CLSPN


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneLGALS3BPC0023890Liver Cirrhosis1CTD_human