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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 19494

FusionGeneSummary for LAS1L_MSN

check button Fusion gene summary
Fusion gene informationFusion gene name: LAS1L_MSN
Fusion gene ID: 19494
HgeneTgene
Gene symbol

LAS1L

MSN

Gene ID

81887

4478

Gene nameLAS1 like, ribosome biogenesis factormoesin
SynonymsLas1-like|WTS|dJ475B7.2HEL70|IMD50
Cytomap

Xq12

Xq12

Type of geneprotein-codingprotein-coding
Descriptionribosomal biogenesis protein LAS1Lprotein LAS1 homologmoesinepididymis luminal protein 70membrane-organizing extension spike protein
Modification date2018052320180527
UniProtAcc

Q9Y4W2

P26038

Ensembl transtripts involved in fusion geneENST00000374807, ENST00000374811, 
ENST00000374804, ENST00000312391, 
ENST00000609205, ENST00000360270, 
Fusion gene scores* DoF score2 X 2 X 2=86 X 6 X 2=72
# samples 27
** MAII scorelog2(2/8*10)=1.32192809488736log2(7/72*10)=-0.0406419844973459
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: LAS1L [Title/Abstract] AND MSN [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneMSN

GO:0001771

immunological synapse formation

27405666

TgeneMSN

GO:0042098

T cell proliferation

27405666

TgeneMSN

GO:0070489

T cell aggregation

27405666

TgeneMSN

GO:0071394

cellular response to testosterone stimulus

24065547

TgeneMSN

GO:0072678

T cell migration

27405666


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDKIRCTCGA-CZ-5468-01ALAS1LchrX

64751237

-MSNchrX

64820542

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5CDS-intronENST00000374807ENST00000609205LAS1LchrX

64751237

-MSNchrX

64820542

+
5CDS-intronENST00000374807ENST00000360270LAS1LchrX

64751237

-MSNchrX

64820542

+
5CDS-intronENST00000374811ENST00000609205LAS1LchrX

64751237

-MSNchrX

64820542

+
5CDS-intronENST00000374811ENST00000360270LAS1LchrX

64751237

-MSNchrX

64820542

+
5CDS-intronENST00000374804ENST00000609205LAS1LchrX

64751237

-MSNchrX

64820542

+
5CDS-intronENST00000374804ENST00000360270LAS1LchrX

64751237

-MSNchrX

64820542

+
5CDS-intronENST00000312391ENST00000609205LAS1LchrX

64751237

-MSNchrX

64820542

+
5CDS-intronENST00000312391ENST00000360270LAS1LchrX

64751237

-MSNchrX

64820542

+

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FusionProtFeatures for LAS1L_MSN


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
LAS1L

Q9Y4W2

MSN

P26038

Involved in the biogenesis of the 60S ribosomal subunit.Required for maturation of the 28S rRNA. Functions as a componentof the Five Friends of Methylated CHTOP (5FMC) complex; the 5FMCcomplex is recruited to ZNF148 by methylated CHTOP, leading todesumoylation of ZNF148 and subsequent transactivation of ZNF148target genes. {ECO:0000269|PubMed:20647540,ECO:0000269|PubMed:22872859}. Probably involved in connections of major cytoskeletalstructures to the plasma membrane. May inhibit herpes simplexvirus 1 infection at an early stage. Plays a role in regulatingthe proliferation, migration, and adhesion of human lymphoid cellsand participates in immunologic synapse formation(PubMed:27405666). {ECO:0000269|PubMed:21549406,ECO:0000269|PubMed:27405666}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for LAS1L_MSN


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for LAS1L_MSN


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
LAS1LPNKP, PELP1, UBC, SMARCAD1, SIRT7, CUL3, CAND1, TEX10, BARD1, ECT2, MDC1, CBX6, IPO5, NOL9, SENP3, WDR18, SOX2, PASK, CEP250, CUL7, OBSL1, RNF2, BMI1, SUMO2, NTRK1, IFI16, XPO1, RPL10, NES, CDC5L, ZNF746, RAF1, FOXA1MSNTSC1, HLA-B, BID, TNFRSF10B, EZR, FADD, FASLG, MAPK8, FAS, RHOA, ARHGDIA, CASP10, CASP8, TNFRSF1A, MSN, ICAM3, NCF1, NCF4, VCAM1, SLC9A3R1, SELL, SPN, SPTAN1, CD46, ICAM2, CD44, SELPLG, H2AFX, ELAVL1, SIRT7, ISG15, TERF1, BRCA1, CDK2, HADHA, GTF3C4, SRCAP, S100A16, FN1, ITGA4, ICAM1, CD81, IGSF8, CDK11B, MAPK10, ASNS, CAPN2, DHX15, GINS3, GSS, HSPA5, AHCY, ATIC, DCPS, FH, NAE1, PDIA4, PFAS, PTMA, STK24, TATDN1, TUBB3, VCL, NSFL1C, PAFAH1B1, PAFAH1B2, PAPSS1, PDHA1, PPP1R2, RAP1GDS1, ABCE1, TSPAN33, VPS11, ACAA2, AKR1B1, CALR, CALU, CD2AP, CTNNB1, EIF5AL1, ENO1, ENO2, FABP5, FAXC, FKBP2, HNRNPA1, HSD17B10, HSPA4, HSPA4L, HSPE1, HSPH1, ISYNA1, JUP, LCP1, DUT, GDI1, HSPB1, IMPA2, ME1, NOTCH2, P4HB, PGD, PGK1, PGK2, PLS1, PLS3, RCN1, STIP1, TAGLN2, TKT, UCHL3, WDR1, EWSR1, MYH9, PTPN1, MYO19, TRIM15, MCM2, U2AF2, SMURF1, CDC73, MISP, MRPL12


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for LAS1L_MSN


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for LAS1L_MSN


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneMSNC0023893Liver Cirrhosis, Experimental1CTD_human
TgeneMSNC0029408Degenerative polyarthritis1CTD_human
TgeneMSNC0151744Myocardial Ischemia1CTD_human
TgeneMSNC3495559Juvenile arthritis1CTD_human