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Fusion gene ID: 19494 |
FusionGeneSummary for LAS1L_MSN |
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Fusion gene information | Fusion gene name: LAS1L_MSN | Fusion gene ID: 19494 | Hgene | Tgene | Gene symbol | LAS1L | MSN | Gene ID | 81887 | 4478 |
Gene name | LAS1 like, ribosome biogenesis factor | moesin | |
Synonyms | Las1-like|WTS|dJ475B7.2 | HEL70|IMD50 | |
Cytomap | Xq12 | Xq12 | |
Type of gene | protein-coding | protein-coding | |
Description | ribosomal biogenesis protein LAS1Lprotein LAS1 homolog | moesinepididymis luminal protein 70membrane-organizing extension spike protein | |
Modification date | 20180523 | 20180527 | |
UniProtAcc | Q9Y4W2 | P26038 | |
Ensembl transtripts involved in fusion gene | ENST00000374807, ENST00000374811, ENST00000374804, ENST00000312391, | ENST00000609205, ENST00000360270, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 6 X 6 X 2=72 |
# samples | 2 | 7 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(7/72*10)=-0.0406419844973459 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: LAS1L [Title/Abstract] AND MSN [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | MSN | GO:0001771 | immunological synapse formation | 27405666 |
Tgene | MSN | GO:0042098 | T cell proliferation | 27405666 |
Tgene | MSN | GO:0070489 | T cell aggregation | 27405666 |
Tgene | MSN | GO:0071394 | cellular response to testosterone stimulus | 24065547 |
Tgene | MSN | GO:0072678 | T cell migration | 27405666 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | KIRC | TCGA-CZ-5468-01A | LAS1L | chrX | 64751237 | - | MSN | chrX | 64820542 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000374807 | ENST00000609205 | LAS1L | chrX | 64751237 | - | MSN | chrX | 64820542 | + |
5CDS-intron | ENST00000374807 | ENST00000360270 | LAS1L | chrX | 64751237 | - | MSN | chrX | 64820542 | + |
5CDS-intron | ENST00000374811 | ENST00000609205 | LAS1L | chrX | 64751237 | - | MSN | chrX | 64820542 | + |
5CDS-intron | ENST00000374811 | ENST00000360270 | LAS1L | chrX | 64751237 | - | MSN | chrX | 64820542 | + |
5CDS-intron | ENST00000374804 | ENST00000609205 | LAS1L | chrX | 64751237 | - | MSN | chrX | 64820542 | + |
5CDS-intron | ENST00000374804 | ENST00000360270 | LAS1L | chrX | 64751237 | - | MSN | chrX | 64820542 | + |
5CDS-intron | ENST00000312391 | ENST00000609205 | LAS1L | chrX | 64751237 | - | MSN | chrX | 64820542 | + |
5CDS-intron | ENST00000312391 | ENST00000360270 | LAS1L | chrX | 64751237 | - | MSN | chrX | 64820542 | + |
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FusionProtFeatures for LAS1L_MSN |
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Hgene | Tgene |
LAS1L | MSN |
Involved in the biogenesis of the 60S ribosomal subunit.Required for maturation of the 28S rRNA. Functions as a componentof the Five Friends of Methylated CHTOP (5FMC) complex; the 5FMCcomplex is recruited to ZNF148 by methylated CHTOP, leading todesumoylation of ZNF148 and subsequent transactivation of ZNF148target genes. {ECO:0000269|PubMed:20647540,ECO:0000269|PubMed:22872859}. | Probably involved in connections of major cytoskeletalstructures to the plasma membrane. May inhibit herpes simplexvirus 1 infection at an early stage. Plays a role in regulatingthe proliferation, migration, and adhesion of human lymphoid cellsand participates in immunologic synapse formation(PubMed:27405666). {ECO:0000269|PubMed:21549406,ECO:0000269|PubMed:27405666}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for LAS1L_MSN |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for LAS1L_MSN |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
LAS1L | PNKP, PELP1, UBC, SMARCAD1, SIRT7, CUL3, CAND1, TEX10, BARD1, ECT2, MDC1, CBX6, IPO5, NOL9, SENP3, WDR18, SOX2, PASK, CEP250, CUL7, OBSL1, RNF2, BMI1, SUMO2, NTRK1, IFI16, XPO1, RPL10, NES, CDC5L, ZNF746, RAF1, FOXA1 | MSN | TSC1, HLA-B, BID, TNFRSF10B, EZR, FADD, FASLG, MAPK8, FAS, RHOA, ARHGDIA, CASP10, CASP8, TNFRSF1A, MSN, ICAM3, NCF1, NCF4, VCAM1, SLC9A3R1, SELL, SPN, SPTAN1, CD46, ICAM2, CD44, SELPLG, H2AFX, ELAVL1, SIRT7, ISG15, TERF1, BRCA1, CDK2, HADHA, GTF3C4, SRCAP, S100A16, FN1, ITGA4, ICAM1, CD81, IGSF8, CDK11B, MAPK10, ASNS, CAPN2, DHX15, GINS3, GSS, HSPA5, AHCY, ATIC, DCPS, FH, NAE1, PDIA4, PFAS, PTMA, STK24, TATDN1, TUBB3, VCL, NSFL1C, PAFAH1B1, PAFAH1B2, PAPSS1, PDHA1, PPP1R2, RAP1GDS1, ABCE1, TSPAN33, VPS11, ACAA2, AKR1B1, CALR, CALU, CD2AP, CTNNB1, EIF5AL1, ENO1, ENO2, FABP5, FAXC, FKBP2, HNRNPA1, HSD17B10, HSPA4, HSPA4L, HSPE1, HSPH1, ISYNA1, JUP, LCP1, DUT, GDI1, HSPB1, IMPA2, ME1, NOTCH2, P4HB, PGD, PGK1, PGK2, PLS1, PLS3, RCN1, STIP1, TAGLN2, TKT, UCHL3, WDR1, EWSR1, MYH9, PTPN1, MYO19, TRIM15, MCM2, U2AF2, SMURF1, CDC73, MISP, MRPL12 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for LAS1L_MSN |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for LAS1L_MSN |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | MSN | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Tgene | MSN | C0029408 | Degenerative polyarthritis | 1 | CTD_human |
Tgene | MSN | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Tgene | MSN | C3495559 | Juvenile arthritis | 1 | CTD_human |