![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 19459 |
FusionGeneSummary for LARP1B_C4orf29 |
![]() |
Fusion gene information | Fusion gene name: LARP1B_C4orf29 | Fusion gene ID: 19459 | Hgene | Tgene | Gene symbol | LARP1B | C4orf29 | Gene ID | 55132 | 80167 |
Gene name | La ribonucleoprotein domain family member 1B | abhydrolase domain containing 18 | |
Synonyms | LARP2 | C4orf29 | |
Cytomap | 4q28.2 | 4q28.2 | |
Type of gene | protein-coding | protein-coding | |
Description | la-related protein 1BLa ribonucleoprotein domain family, member 2la-related protein 2 | protein ABHD18abhydrolase domain-containing protein 18alpha/beta hydrolase domain-containing protein 18 | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q659C4 | ||
Ensembl transtripts involved in fusion gene | ENST00000326639, ENST00000264584, ENST00000441387, ENST00000354456, ENST00000506199, ENST00000512292, ENST00000394288, ENST00000432347, ENST00000427266, | ENST00000398965, ENST00000444616, ENST00000388795, | |
Fusion gene scores | * DoF score | 6 X 7 X 3=126 | 1 X 1 X 1=1 |
# samples | 9 | 1 | |
** MAII score | log2(9/126*10)=-0.485426827170242 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: LARP1B [Title/Abstract] AND C4orf29 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BLCA | TCGA-XF-A9SP-01A | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000326639 | ENST00000398965 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000326639 | ENST00000444616 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000326639 | ENST00000388795 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000264584 | ENST00000398965 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000264584 | ENST00000444616 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000264584 | ENST00000388795 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000441387 | ENST00000398965 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000441387 | ENST00000444616 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000441387 | ENST00000388795 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5UTR-intron | ENST00000354456 | ENST00000398965 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5UTR-intron | ENST00000354456 | ENST00000444616 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5UTR-intron | ENST00000354456 | ENST00000388795 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
intron-intron | ENST00000506199 | ENST00000398965 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
intron-intron | ENST00000506199 | ENST00000444616 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
intron-intron | ENST00000506199 | ENST00000388795 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000512292 | ENST00000398965 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000512292 | ENST00000444616 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000512292 | ENST00000388795 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000394288 | ENST00000398965 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000394288 | ENST00000444616 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000394288 | ENST00000388795 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000432347 | ENST00000398965 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000432347 | ENST00000444616 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000432347 | ENST00000388795 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000427266 | ENST00000398965 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000427266 | ENST00000444616 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
5CDS-intron | ENST00000427266 | ENST00000388795 | LARP1B | chr4 | 129012667 | + | C4orf29 | chr4 | 128956917 | + |
Top |
FusionProtFeatures for LARP1B_C4orf29 |
![]() |
Hgene | Tgene |
LARP1B | C4orf29 |
Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for LARP1B_C4orf29 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for LARP1B_C4orf29 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
LARP1B | ELAVL1, CUL3, APP, UBC, POLR2J, KIF2A, TRIM69, CCNI2, TRA2A, NIFK, RPS2, ZC3H3, HNRNPA1, LUC7L2, CCNG1, POC1A, GSPT2, LARP1, ELAVL2, CDX1, DGCR8, H2AFX, APOBEC3D, WDR46, HIST1H1E, SNRNP70 | C4orf29 | SELO, VSIG4, HSPD1, IMPDH1, C1orf85, PDCD1, BPNT1, MGAT5B, LAMP2, YBEY, CD79A, SLC2A12, APLNR, TOR1AIP2, PRIMPOL |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for LARP1B_C4orf29 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for LARP1B_C4orf29 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |