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Fusion gene ID: 19382 |
FusionGeneSummary for LAMB1_HBP1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: LAMB1_HBP1 | Fusion gene ID: 19382 | Hgene | Tgene | Gene symbol | LAMB1 | HBP1 | Gene ID | 3912 | 26959 |
| Gene name | laminin subunit beta 1 | HMG-box transcription factor 1 | |
| Synonyms | CLM|LIS5 | - | |
| Cytomap | 7q31.1 | 7q22.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | laminin subunit beta-1laminin B1 chainlaminin, beta 1 | HMG box-containing protein 1high mobility group box transcription factor 1 | |
| Modification date | 20180522 | 20180519 | |
| UniProtAcc | P07942 | O60381 | |
| Ensembl transtripts involved in fusion gene | ENST00000393561, ENST00000222399, ENST00000393560, ENST00000474380, | ENST00000468410, ENST00000222574, ENST00000485846, ENST00000461963, | |
| Fusion gene scores | * DoF score | 10 X 8 X 4=320 | 3 X 3 X 2=18 |
| # samples | 10 | 3 | |
| ** MAII score | log2(10/320*10)=-1.67807190511264 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: LAMB1 [Title/Abstract] AND HBP1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | LAMB1 | GO:0030335 | positive regulation of cell migration | 16289578 |
| Hgene | LAMB1 | GO:0031175 | neuron projection development | 15894315 |
| Hgene | LAMB1 | GO:0034446 | substrate adhesion-dependent cell spreading | 16236823 |
| Hgene | LAMB1 | GO:0042476 | odontogenesis | 15894315 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | SARC | TCGA-SI-A71Q-01A | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-5UTR | ENST00000393561 | ENST00000468410 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| 5CDS-5UTR | ENST00000393561 | ENST00000222574 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| 5CDS-5UTR | ENST00000393561 | ENST00000485846 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| 5CDS-intron | ENST00000393561 | ENST00000461963 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| 5CDS-5UTR | ENST00000222399 | ENST00000468410 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| 5CDS-5UTR | ENST00000222399 | ENST00000222574 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| 5CDS-5UTR | ENST00000222399 | ENST00000485846 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| 5CDS-intron | ENST00000222399 | ENST00000461963 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| 5CDS-5UTR | ENST00000393560 | ENST00000468410 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| 5CDS-5UTR | ENST00000393560 | ENST00000222574 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| 5CDS-5UTR | ENST00000393560 | ENST00000485846 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| 5CDS-intron | ENST00000393560 | ENST00000461963 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| intron-5UTR | ENST00000474380 | ENST00000468410 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| intron-5UTR | ENST00000474380 | ENST00000222574 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| intron-5UTR | ENST00000474380 | ENST00000485846 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
| intron-intron | ENST00000474380 | ENST00000461963 | LAMB1 | chr7 | 107601651 | - | HBP1 | chr7 | 106820324 | + |
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FusionProtFeatures for LAMB1_HBP1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| LAMB1 | HBP1 |
| Binding to cells via a high affinity receptor, lamininis thought to mediate the attachment, migration and organizationof cells into tissues during embryonic development by interactingwith other extracellular matrix components. Involved in theorganization of the laminar architecture of cerebral cortex. It isprobably required for the integrity of the basement membrane/glialimitans that serves as an anchor point for the endfeet of radialglial cells and as a physical barrier to migrating neurons. Radialglial cells play a central role in cerebral cortical development,where they act both as the proliferative unit of the cerebralcortex and a scaffold for neurons migrating toward the pialsurface. {ECO:0000269|PubMed:23472759}. | Transcriptional repressor that binds to the promoterregion of target genes. Plays a role in the regulation of the cellcycle and of the Wnt pathway. Binds preferentially to the sequence5'-TTCATTCATTCA-3'. Binding to the H1F0 promoter is enhanced byinteraction with RB1. Disrupts the interaction between DNA andTCF4. {ECO:0000269|PubMed:10562551, ECO:0000269|PubMed:10958660,ECO:0000269|PubMed:11500377}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for LAMB1_HBP1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for LAMB1_HBP1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| LAMB1 | TGFB1, ATXN7, CACNA1A, LAMC1, UBC, ATXN7L2, GFI1B, FBXO6, NQO1, DPY30, HSPD1, PDIA3, ERBB2IP, HECW2, KIAA1033, POLR2E, ANTXR2, PA2G4, LGALS3, NTF3, OGN, LGALS9, TMEM25, PTPRK, CD96, PSMD5, NTRK1, PSMC5, KIF11, FGFR1OP, SERPINA12, OS9, DEFA1, COLEC12, CRP, LYZL2, PSG8, BCAM, LMNA | HBP1 | RB1, RBL2, SIN3A, HDAC1, ANKRD2, MYC, EP300, CREBBP, CD2AP, EWSR1, KIAA1279, ZNF212, SMAD1, TMEM37, FBXW11, RMND5A, TCF7L2, CASP8, ESR1, RB1CC1, PRKAR2B |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for LAMB1_HBP1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for LAMB1_HBP1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | LAMB1 | C0004352 | Autistic Disorder | 1 | CTD_human |
| Hgene | LAMB1 | C0009324 | Ulcerative Colitis | 1 | CTD_human |
| Hgene | LAMB1 | C0009363 | Congenital ocular coloboma (disorder) | 1 | CTD_human |
| Hgene | LAMB1 | C0014175 | Endometriosis | 1 | CTD_human |
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