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Fusion gene ID: 19291 |
FusionGeneSummary for KRTCAP2_PIGM |
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Fusion gene information | Fusion gene name: KRTCAP2_PIGM | Fusion gene ID: 19291 | Hgene | Tgene | Gene symbol | KRTCAP2 | PIGM | Gene ID | 200185 | 93183 |
Gene name | keratinocyte associated protein 2 | phosphatidylinositol glycan anchor biosynthesis class M | |
Synonyms | KCP2 | GPI-MT-I | |
Cytomap | 1q22 | 1q23.2 | |
Type of gene | protein-coding | protein-coding | |
Description | keratinocyte-associated protein 2KCP-2keratinocytes associated protein 2 | GPI mannosyltransferase 1DPM:GlcN-(acyl-)PI mannosyltransferaseGPI mannosyltransferase IPIG-M mannosyltransferasedol-P-Man dependent GPI mannosyltransferasephosphatidylinositol-glycan biosynthesis class M protein | |
Modification date | 20180519 | 20180522 | |
UniProtAcc | Q8N6L1 | Q9H3S5 | |
Ensembl transtripts involved in fusion gene | ENST00000295682, ENST00000490672, | ENST00000368090, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 1 X 1 X 1=1 |
# samples | 1 | 1 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: KRTCAP2 [Title/Abstract] AND PIGM [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AA215640 | KRTCAP2 | chr1 | 155144233 | - | PIGM | chr1 | 159999323 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3UTR | ENST00000295682 | ENST00000368090 | KRTCAP2 | chr1 | 155144233 | - | PIGM | chr1 | 159999323 | - |
intron-3UTR | ENST00000490672 | ENST00000368090 | KRTCAP2 | chr1 | 155144233 | - | PIGM | chr1 | 159999323 | - |
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FusionProtFeatures for KRTCAP2_PIGM |
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Hgene | Tgene |
KRTCAP2 | PIGM |
Acts as accessory component of the N-oligosaccharyltransferase (OST) complex which catalyzes the transfer of a highmannose oligosaccharide from a lipid-linked oligosaccharide donorto an asparagine residue within an Asn-X-Ser/Thr consensus motifin nascent polypeptide chains. Required for efficient substrate-specific N-glycosylation probably involving the STT3A-containingOST complex. May be involved in N-glycosylation of APP (amyloid-beta precursor protein). Can modulate gamma-secretase cleavage ofAPP by enhancing endoprotelysis of PSEN1.{ECO:0000269|PubMed:21768116, ECO:0000269|PubMed:22467853,ECO:0000305}. | Mannosyltransferase involved inglycosylphosphatidylinositol-anchor biosynthesis. Transfers thefirst alpha-1,4-mannose to GlcN-acyl-PI during GPI precursorassembly. {ECO:0000269|PubMed:11226175}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for KRTCAP2_PIGM |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for KRTCAP2_PIGM |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for KRTCAP2_PIGM |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for KRTCAP2_PIGM |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | PIGM | C0036572 | Seizures | 1 | CTD_human |
Tgene | PIGM | C0042487 | Venous Thrombosis | 1 | CTD_human |