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Fusion gene ID: 19040 |
FusionGeneSummary for KLHL2_GALNTL6 |
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Fusion gene information | Fusion gene name: KLHL2_GALNTL6 | Fusion gene ID: 19040 | Hgene | Tgene | Gene symbol | KLHL2 | GALNTL6 | Gene ID | 11275 | 442117 |
Gene name | kelch like family member 2 | polypeptide N-acetylgalactosaminyltransferase like 6 | |
Synonyms | ABP-KELCH|MAV|MAYVEN | GALNACT20|GALNT17|GalNAc-T6L | |
Cytomap | 4q32.3 | 4q34.1 | |
Type of gene | protein-coding | protein-coding | |
Description | kelch-like protein 2actin-binding protein Mayvenkelch-like 2, Mayven | polypeptide N-acetylgalactosaminyltransferase-like 6GaNTase 17GalNAc transferase 17UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 17UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 20UDP-N-acetyl-alpha-D-gala | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | O95198 | Q49A17 | |
Ensembl transtripts involved in fusion gene | ENST00000226725, ENST00000514860, ENST00000538127, ENST00000421009, ENST00000506761, ENST00000509028, | ENST00000506823, ENST00000508122, ENST00000457021, ENST00000511251, | |
Fusion gene scores | * DoF score | 4 X 3 X 3=36 | 7 X 5 X 7=245 |
# samples | 4 | 7 | |
** MAII score | log2(4/36*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(7/245*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: KLHL2 [Title/Abstract] AND GALNTL6 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | GALNTL6 | GO:0018243 | protein O-linked glycosylation via threonine | 22186971 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | PRAD | TCGA-EJ-5498-01A | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000226725 | ENST00000506823 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
Frame-shift | ENST00000226725 | ENST00000508122 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
5CDS-intron | ENST00000226725 | ENST00000457021 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
5CDS-intron | ENST00000226725 | ENST00000511251 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
Frame-shift | ENST00000514860 | ENST00000506823 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
Frame-shift | ENST00000514860 | ENST00000508122 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
5CDS-intron | ENST00000514860 | ENST00000457021 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
5CDS-intron | ENST00000514860 | ENST00000511251 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
5UTR-3CDS | ENST00000538127 | ENST00000506823 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
5UTR-3CDS | ENST00000538127 | ENST00000508122 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
5UTR-intron | ENST00000538127 | ENST00000457021 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
5UTR-intron | ENST00000538127 | ENST00000511251 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
5UTR-3CDS | ENST00000421009 | ENST00000506823 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
5UTR-3CDS | ENST00000421009 | ENST00000508122 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
5UTR-intron | ENST00000421009 | ENST00000457021 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
5UTR-intron | ENST00000421009 | ENST00000511251 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
intron-3CDS | ENST00000506761 | ENST00000506823 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
intron-3CDS | ENST00000506761 | ENST00000508122 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
intron-intron | ENST00000506761 | ENST00000457021 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
intron-intron | ENST00000506761 | ENST00000511251 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
intron-3CDS | ENST00000509028 | ENST00000506823 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
intron-3CDS | ENST00000509028 | ENST00000508122 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
intron-intron | ENST00000509028 | ENST00000457021 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
intron-intron | ENST00000509028 | ENST00000511251 | KLHL2 | chr4 | 166141211 | + | GALNTL6 | chr4 | 173852312 | + |
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FusionProtFeatures for KLHL2_GALNTL6 |
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Hgene | Tgene |
KLHL2 | GALNTL6 |
Component of a cullin-RING-based BCR (BTB-CUL3-RBX1) E3ubiquitin-protein ligase complex that mediates the ubiquitinationof target proteins, such as NPTXR, leading most often to theirproteasomal degradation (By similarity). Responsible fordegradative ubiquitination of the WNK kinases WNK1, WNK3 and WNK4.Plays a role in the reorganization of the actin cytoskeleton.Promotes growth of cell projections in oligodendrocyte precursors.{ECO:0000250, ECO:0000269|PubMed:15715669,ECO:0000269|PubMed:23838290}. | Catalyzes the initial reaction in O-linkedoligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on theprotein receptor. {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for KLHL2_GALNTL6 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for KLHL2_GALNTL6 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
KLHL2 | KLHL12, CUL3, KEAP1, NACC1, KLHL2, ACTC1, WNK1, WNK2, WNK3, WNK4, UBE2D1, CLK2, BCAM, SDCBP, UBE2C, TNPO2, TXNDC12, TMA16, CCDC43, ZNF114, ZFP36, TSPAN5, DCTN2, KLHL3, DCTN1, UCK1, KLHL17, TRIM47, PIK3C2B, SCYL1, TRIM9, DNAJC13, XIAP, USP28, FAM160B1, SIPA1L1, FBXL17, TRIM8, ACTR10, CUL7, FBXW8, UPRT, DCTN6, FBXO33, ACIN1, DCTN5, DCTN4, UCKL1, ACTR1B, PHLDB3, ARHGEF7, GIT2, CCDC8, DCTN3, GPRASP2, DIABLO, ACTR1A, EPDR1, TCF25, CASK, YARS2, RRBP1, SAMD1, OBSL1, IMPDH1, APPL1, RNPS1 | GALNTL6 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for KLHL2_GALNTL6 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for KLHL2_GALNTL6 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |