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Fusion gene ID: 19004 |
FusionGeneSummary for KLHDC4_CA5A |
Fusion gene summary |
Fusion gene information | Fusion gene name: KLHDC4_CA5A | Fusion gene ID: 19004 | Hgene | Tgene | Gene symbol | KLHDC4 | CA5A | Gene ID | 54758 | 763 |
Gene name | kelch domain containing 4 | carbonic anhydrase 5A | |
Synonyms | - | CA5|CA5AD|CAV|CAVA|GS1-21A4.1 | |
Cytomap | 16q24.2 | 16q24.2 | |
Type of gene | protein-coding | protein-coding | |
Description | kelch domain-containing protein 4 | carbonic anhydrase 5A, mitochondrialCA-VAcarbonate dehydratase VAcarbonic anhydrase V, mitochondrialcarbonic anhydrase VA, mitochondrialcarbonic dehydratase | |
Modification date | 20180519 | 20180522 | |
UniProtAcc | Q8TBB5 | P35218 | |
Ensembl transtripts involved in fusion gene | ENST00000353170, ENST00000347925, ENST00000566349, ENST00000270583, | ENST00000309893, ENST00000568801, | |
Fusion gene scores | * DoF score | 4 X 3 X 4=48 | 1 X 1 X 1=1 |
# samples | 4 | 1 | |
** MAII score | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: KLHDC4 [Title/Abstract] AND CA5A [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | HNSC | TCGA-BA-A4II-01A | KLHDC4 | chr16 | 87799398 | - | CA5A | chr16 | 87936126 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000353170 | ENST00000309893 | KLHDC4 | chr16 | 87799398 | - | CA5A | chr16 | 87936126 | - |
5CDS-intron | ENST00000353170 | ENST00000568801 | KLHDC4 | chr16 | 87799398 | - | CA5A | chr16 | 87936126 | - |
In-frame | ENST00000347925 | ENST00000309893 | KLHDC4 | chr16 | 87799398 | - | CA5A | chr16 | 87936126 | - |
5CDS-intron | ENST00000347925 | ENST00000568801 | KLHDC4 | chr16 | 87799398 | - | CA5A | chr16 | 87936126 | - |
intron-3CDS | ENST00000566349 | ENST00000309893 | KLHDC4 | chr16 | 87799398 | - | CA5A | chr16 | 87936126 | - |
intron-intron | ENST00000566349 | ENST00000568801 | KLHDC4 | chr16 | 87799398 | - | CA5A | chr16 | 87936126 | - |
In-frame | ENST00000270583 | ENST00000309893 | KLHDC4 | chr16 | 87799398 | - | CA5A | chr16 | 87936126 | - |
5CDS-intron | ENST00000270583 | ENST00000568801 | KLHDC4 | chr16 | 87799398 | - | CA5A | chr16 | 87936126 | - |
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FusionProtFeatures for KLHDC4_CA5A |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
KLHDC4 | CA5A |
Reversible hydration of carbon dioxide. Low activity. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >CA5A | chr16:87799398 | chr16:87936126 | ENST00000309893 | - | 2 | 7 | 235_236 | 153 | 306 | Region | Substrate binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000270583 | - | 1 | 12 | 133_187 | 33 | 564 | Repeat | Note=Kelch 2 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000270583 | - | 1 | 12 | 188_241 | 33 | 564 | Repeat | Note=Kelch 3 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000270583 | - | 1 | 12 | 243_289 | 33 | 564 | Repeat | Note=Kelch 4 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000270583 | - | 1 | 12 | 308_361 | 33 | 564 | Repeat | Note=Kelch 5 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000270583 | - | 1 | 12 | 443_494 | 33 | 564 | Repeat | Note=Kelch 6 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000270583 | - | 1 | 12 | 77_129 | 33 | 564 | Repeat | Note=Kelch 1 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000347925 | - | 1 | 11 | 133_187 | 33 | 524 | Repeat | Note=Kelch 2 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000347925 | - | 1 | 11 | 188_241 | 33 | 524 | Repeat | Note=Kelch 3 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000347925 | - | 1 | 11 | 243_289 | 33 | 524 | Repeat | Note=Kelch 4 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000347925 | - | 1 | 11 | 308_361 | 33 | 524 | Repeat | Note=Kelch 5 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000347925 | - | 1 | 11 | 443_494 | 33 | 524 | Repeat | Note=Kelch 6 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000347925 | - | 1 | 11 | 77_129 | 33 | 524 | Repeat | Note=Kelch 1 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000353170 | - | 1 | 10 | 133_187 | 33 | 521 | Repeat | Note=Kelch 2 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000353170 | - | 1 | 10 | 188_241 | 33 | 521 | Repeat | Note=Kelch 3 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000353170 | - | 1 | 10 | 243_289 | 33 | 521 | Repeat | Note=Kelch 4 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000353170 | - | 1 | 10 | 308_361 | 33 | 521 | Repeat | Note=Kelch 5 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000353170 | - | 1 | 10 | 443_494 | 33 | 521 | Repeat | Note=Kelch 6 |
Hgene | >KLHDC4 | chr16:87799398 | chr16:87936126 | ENST00000353170 | - | 1 | 10 | 77_129 | 33 | 521 | Repeat | Note=Kelch 1 |
Tgene | CA5A | chr16:87799398 | chr16:87936126 | ENST00000309893 | - | 2 | 7 | 39_296 | 153 | 306 | Domain | Alpha-carbonic anhydrase |
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FusionGeneSequence for KLHDC4_CA5A |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_KLHDC4_ENST00000353170_chr16_87799398_-_CA5A_ENST00000309893_chr16_87936126_-_186aa MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEELHLVHWNSVKYQNYKEAVVGENGLAVIGVFLKLGAHHQTLQRLVDILPEIKHKDARA AMRPFDPSTLLPTCWDYWTYAGSLTTPPLTESVTWIIQKEPVEVAPSQLSAFRTLLFSALGEEEKMMVNNYRPLQPLMNRKVWASFQATN >In-frame_KLHDC4_ENST00000347925_chr16_87799398_-_CA5A_ENST00000309893_chr16_87936126_-_186aa MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEELHLVHWNSVKYQNYKEAVVGENGLAVIGVFLKLGAHHQTLQRLVDILPEIKHKDARA AMRPFDPSTLLPTCWDYWTYAGSLTTPPLTESVTWIIQKEPVEVAPSQLSAFRTLLFSALGEEEKMMVNNYRPLQPLMNRKVWASFQATN >In-frame_KLHDC4_ENST00000270583_chr16_87799398_-_CA5A_ENST00000309893_chr16_87936126_-_186aa MGKKGKKEKKGRGAEKTAAKMEKKVSKRSRKEELHLVHWNSVKYQNYKEAVVGENGLAVIGVFLKLGAHHQTLQRLVDILPEIKHKDARA AMRPFDPSTLLPTCWDYWTYAGSLTTPPLTESVTWIIQKEPVEVAPSQLSAFRTLLFSALGEEEKMMVNNYRPLQPLMNRKVWASFQATN |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_KLHDC4_ENST00000353170_chr16_87799398_-_CA5A_ENST00000309893_chr16_87936126_-_558nt ATGGGCAAGAAGGGCAAGAAGGAGAAGAAGGGCCGCGGCGCGGAGAAGACGGCCGCCAAGATGGAGAAGAAGGTGTCTAAGCGCTCGCGG AAGGAGGAGCTGCATTTAGTTCACTGGAATTCTGTGAAATACCAAAATTACAAGGAAGCTGTCGTGGGAGAGAATGGTTTGGCTGTGATA GGCGTGTTTTTAAAGCTCGGGGCCCATCATCAGACGCTGCAGAGGCTGGTGGACATCTTGCCGGAAATAAAACATAAGGACGCGCGGGCG GCCATGCGCCCCTTCGACCCCTCCACTCTGCTGCCCACCTGCTGGGATTACTGGACCTACGCGGGCTCGCTCACCACCCCGCCGCTGACC GAGTCGGTCACCTGGATCATCCAGAAGGAGCCCGTTGAAGTGGCCCCAAGCCAGCTCTCTGCATTTCGTACTCTCCTGTTTTCTGCACTT GGTGAAGAGGAGAAGATGATGGTGAACAACTATCGCCCACTTCAACCCTTGATGAACCGGAAGGTCTGGGCGTCCTTCCAGGCCACTAAT >In-frame_KLHDC4_ENST00000347925_chr16_87799398_-_CA5A_ENST00000309893_chr16_87936126_-_558nt ATGGGCAAGAAGGGCAAGAAGGAGAAGAAGGGCCGCGGCGCGGAGAAGACGGCCGCCAAGATGGAGAAGAAGGTGTCTAAGCGCTCGCGG AAGGAGGAGCTGCATTTAGTTCACTGGAATTCTGTGAAATACCAAAATTACAAGGAAGCTGTCGTGGGAGAGAATGGTTTGGCTGTGATA GGCGTGTTTTTAAAGCTCGGGGCCCATCATCAGACGCTGCAGAGGCTGGTGGACATCTTGCCGGAAATAAAACATAAGGACGCGCGGGCG GCCATGCGCCCCTTCGACCCCTCCACTCTGCTGCCCACCTGCTGGGATTACTGGACCTACGCGGGCTCGCTCACCACCCCGCCGCTGACC GAGTCGGTCACCTGGATCATCCAGAAGGAGCCCGTTGAAGTGGCCCCAAGCCAGCTCTCTGCATTTCGTACTCTCCTGTTTTCTGCACTT GGTGAAGAGGAGAAGATGATGGTGAACAACTATCGCCCACTTCAACCCTTGATGAACCGGAAGGTCTGGGCGTCCTTCCAGGCCACTAAT >In-frame_KLHDC4_ENST00000270583_chr16_87799398_-_CA5A_ENST00000309893_chr16_87936126_-_558nt ATGGGCAAGAAGGGCAAGAAGGAGAAGAAGGGCCGCGGCGCGGAGAAGACGGCCGCCAAGATGGAGAAGAAGGTGTCTAAGCGCTCGCGG AAGGAGGAGCTGCATTTAGTTCACTGGAATTCTGTGAAATACCAAAATTACAAGGAAGCTGTCGTGGGAGAGAATGGTTTGGCTGTGATA GGCGTGTTTTTAAAGCTCGGGGCCCATCATCAGACGCTGCAGAGGCTGGTGGACATCTTGCCGGAAATAAAACATAAGGACGCGCGGGCG GCCATGCGCCCCTTCGACCCCTCCACTCTGCTGCCCACCTGCTGGGATTACTGGACCTACGCGGGCTCGCTCACCACCCCGCCGCTGACC GAGTCGGTCACCTGGATCATCCAGAAGGAGCCCGTTGAAGTGGCCCCAAGCCAGCTCTCTGCATTTCGTACTCTCCTGTTTTCTGCACTT GGTGAAGAGGAGAAGATGATGGTGAACAACTATCGCCCACTTCAACCCTTGATGAACCGGAAGGTCTGGGCGTCCTTCCAGGCCACTAAT |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_KLHDC4_ENST00000353170_chr16_87799398_-_CA5A_ENST00000309893_chr16_87936126_-_677nt CCCGGCAAGATGGGCAAGAAGGGCAAGAAGGAGAAGAAGGGCCGCGGCGCGGAGAAGACGGCCGCCAAGATGGAGAAGAAGGTGTCTAAG CGCTCGCGGAAGGAGGAGCTGCATTTAGTTCACTGGAATTCTGTGAAATACCAAAATTACAAGGAAGCTGTCGTGGGAGAGAATGGTTTG GCTGTGATAGGCGTGTTTTTAAAGCTCGGGGCCCATCATCAGACGCTGCAGAGGCTGGTGGACATCTTGCCGGAAATAAAACATAAGGAC GCGCGGGCGGCCATGCGCCCCTTCGACCCCTCCACTCTGCTGCCCACCTGCTGGGATTACTGGACCTACGCGGGCTCGCTCACCACCCCG CCGCTGACCGAGTCGGTCACCTGGATCATCCAGAAGGAGCCCGTTGAAGTGGCCCCAAGCCAGCTCTCTGCATTTCGTACTCTCCTGTTT TCTGCACTTGGTGAAGAGGAGAAGATGATGGTGAACAACTATCGCCCACTTCAACCCTTGATGAACCGGAAGGTCTGGGCGTCCTTCCAG GCCACTAATGAGGGCACAAGGTCCTAGAGACATTAGGTCCACATGAATAGCAGAACTGACTTTGAAGGAAGGAAGCGTTGTTTCCCAAGT >In-frame_KLHDC4_ENST00000347925_chr16_87799398_-_CA5A_ENST00000309893_chr16_87936126_-_754nt CTCCGCCCCACGAGCACCTGTTTCCGAGCGGAGAGCGCGGGCCGTTTTCTTTCCTGGTGTCCCGTCGCGGCTTGGGACCCGGCAAGATGG GCAAGAAGGGCAAGAAGGAGAAGAAGGGCCGCGGCGCGGAGAAGACGGCCGCCAAGATGGAGAAGAAGGTGTCTAAGCGCTCGCGGAAGG AGGAGCTGCATTTAGTTCACTGGAATTCTGTGAAATACCAAAATTACAAGGAAGCTGTCGTGGGAGAGAATGGTTTGGCTGTGATAGGCG TGTTTTTAAAGCTCGGGGCCCATCATCAGACGCTGCAGAGGCTGGTGGACATCTTGCCGGAAATAAAACATAAGGACGCGCGGGCGGCCA TGCGCCCCTTCGACCCCTCCACTCTGCTGCCCACCTGCTGGGATTACTGGACCTACGCGGGCTCGCTCACCACCCCGCCGCTGACCGAGT CGGTCACCTGGATCATCCAGAAGGAGCCCGTTGAAGTGGCCCCAAGCCAGCTCTCTGCATTTCGTACTCTCCTGTTTTCTGCACTTGGTG AAGAGGAGAAGATGATGGTGAACAACTATCGCCCACTTCAACCCTTGATGAACCGGAAGGTCTGGGCGTCCTTCCAGGCCACTAATGAGG GCACAAGGTCCTAGAGACATTAGGTCCACATGAATAGCAGAACTGACTTTGAAGGAAGGAAGCGTTGTTTCCCAAGTTTCACAATGTGAT >In-frame_KLHDC4_ENST00000270583_chr16_87799398_-_CA5A_ENST00000309893_chr16_87936126_-_727nt GCGGAGAGCGCGGGCCGTTTTCTTTCCTGGTGTCCCGTCGCGGCTTGGGACCCGGCAAGATGGGCAAGAAGGGCAAGAAGGAGAAGAAGG GCCGCGGCGCGGAGAAGACGGCCGCCAAGATGGAGAAGAAGGTGTCTAAGCGCTCGCGGAAGGAGGAGCTGCATTTAGTTCACTGGAATT CTGTGAAATACCAAAATTACAAGGAAGCTGTCGTGGGAGAGAATGGTTTGGCTGTGATAGGCGTGTTTTTAAAGCTCGGGGCCCATCATC AGACGCTGCAGAGGCTGGTGGACATCTTGCCGGAAATAAAACATAAGGACGCGCGGGCGGCCATGCGCCCCTTCGACCCCTCCACTCTGC TGCCCACCTGCTGGGATTACTGGACCTACGCGGGCTCGCTCACCACCCCGCCGCTGACCGAGTCGGTCACCTGGATCATCCAGAAGGAGC CCGTTGAAGTGGCCCCAAGCCAGCTCTCTGCATTTCGTACTCTCCTGTTTTCTGCACTTGGTGAAGAGGAGAAGATGATGGTGAACAACT ATCGCCCACTTCAACCCTTGATGAACCGGAAGGTCTGGGCGTCCTTCCAGGCCACTAATGAGGGCACAAGGTCCTAGAGACATTAGGTCC ACATGAATAGCAGAACTGACTTTGAAGGAAGGAAGCGTTGTTTCCCAAGTTTCACAATGTGATTGTACATGACTTCTGAAATTAAAAAGA |
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FusionGenePPI for KLHDC4_CA5A |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
KLHDC4 | TERF1, KDM1A, SUV39H1, SUV39H2, CEP76, SHMT2, MOV10, NXF1, CROT, RPS19 | CA5A | LMNA, TUBB3, PMPCA, SIRT3 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for KLHDC4_CA5A |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | CA5A | P35218 | DB01194 | Brinzolamide | Carbonic anhydrase 5A, mitochondrial | small molecule | approved |
Tgene | CA5A | P35218 | DB00909 | Zonisamide | Carbonic anhydrase 5A, mitochondrial | small molecule | approved|investigational |
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RelatedDiseases for KLHDC4_CA5A |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | CA5A | C3810404 | CARBONIC ANHYDRASE VA DEFICIENCY, HYPERAMMONEMIA DUE TO | 1 | ORPHANET;UNIPROT |