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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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Fusion gene ID: 18989

FusionGeneSummary for KLF6_ARMC4

check button Fusion gene summary
Fusion gene informationFusion gene name: KLF6_ARMC4
Fusion gene ID: 18989
HgeneTgene
Gene symbol

KLF6

ARMC4

Gene ID

1316

55130

Gene nameKruppel like factor 6armadillo repeat containing 4
SynonymsBCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9CILD23
Cytomap

10p15.2

10p12.1

Type of geneprotein-codingprotein-coding
DescriptionKrueppel-like factor 6B-cell-derived protein 1GC-rich binding factorGC-rich sites-binding factor GBFKruppel-like zinc finger protein Zf9core promoter element-binding proteinproto-oncogene BCD1protooncogene B-cell derived 1suppression of tumorigeniarmadillo repeat-containing protein 4testis tissue sperm-binding protein Li 74n
Modification date2018052320180331
UniProtAcc

Q99612

Q5T2S8

Ensembl transtripts involved in fusion geneENST00000497571, ENST00000542957, 
ENST00000173785, ENST00000469435, 
ENST00000537576, ENST00000305242, 
ENST00000545014, ENST00000480504, 
ENST00000239715, 
Fusion gene scores* DoF score4 X 4 X 3=484 X 3 X 4=48
# samples 44
** MAII scorelog2(4/48*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(4/48*10)=-0.263034405833794
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: KLF6 [Title/Abstract] AND ARMC4 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationOncogene involved fusion gene, in-frame and retained their domain.
Tumor suppressor gene involved fusion gene, in-frame but not retained their domain.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneKLF6

GO:0045944

positive regulation of transcription by RNA polymerase II

18755691


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDKIRCTCGA-BP-4962-01AKLF6chr10

3822298

-ARMC4chr10

28196706

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000497571ENST00000537576KLF6chr10

3822298

-ARMC4chr10

28196706

-
In-frameENST00000497571ENST00000305242KLF6chr10

3822298

-ARMC4chr10

28196706

-
In-frameENST00000497571ENST00000545014KLF6chr10

3822298

-ARMC4chr10

28196706

-
5CDS-intronENST00000497571ENST00000480504KLF6chr10

3822298

-ARMC4chr10

28196706

-
5CDS-intronENST00000497571ENST00000239715KLF6chr10

3822298

-ARMC4chr10

28196706

-
intron-3CDSENST00000542957ENST00000537576KLF6chr10

3822298

-ARMC4chr10

28196706

-
intron-3CDSENST00000542957ENST00000305242KLF6chr10

3822298

-ARMC4chr10

28196706

-
intron-3CDSENST00000542957ENST00000545014KLF6chr10

3822298

-ARMC4chr10

28196706

-
intron-intronENST00000542957ENST00000480504KLF6chr10

3822298

-ARMC4chr10

28196706

-
intron-intronENST00000542957ENST00000239715KLF6chr10

3822298

-ARMC4chr10

28196706

-
5UTR-3CDSENST00000173785ENST00000537576KLF6chr10

3822298

-ARMC4chr10

28196706

-
5UTR-3CDSENST00000173785ENST00000305242KLF6chr10

3822298

-ARMC4chr10

28196706

-
5UTR-3CDSENST00000173785ENST00000545014KLF6chr10

3822298

-ARMC4chr10

28196706

-
5UTR-intronENST00000173785ENST00000480504KLF6chr10

3822298

-ARMC4chr10

28196706

-
5UTR-intronENST00000173785ENST00000239715KLF6chr10

3822298

-ARMC4chr10

28196706

-
intron-3CDSENST00000469435ENST00000537576KLF6chr10

3822298

-ARMC4chr10

28196706

-
intron-3CDSENST00000469435ENST00000305242KLF6chr10

3822298

-ARMC4chr10

28196706

-
intron-3CDSENST00000469435ENST00000545014KLF6chr10

3822298

-ARMC4chr10

28196706

-
intron-intronENST00000469435ENST00000480504KLF6chr10

3822298

-ARMC4chr10

28196706

-
intron-intronENST00000469435ENST00000239715KLF6chr10

3822298

-ARMC4chr10

28196706

-

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FusionProtFeatures for KLF6_ARMC4


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
KLF6

Q99612

ARMC4

Q5T2S8

Transcriptional activator (By similarity). Binds a GCbox motif. Could play a role in B-cell growth and development.{ECO:0000250}. Ciliary protein that may be involved in a late step ofaxonemal outer dynein arm assembly. {ECO:0000269|PubMed:23849778}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneKLF6chr10:3822298chr10:28196706ENST00000497571-34200_224266284Zinc fingerC2H2-type 1
HgeneKLF6chr10:3822298chr10:28196706ENST00000497571-34230_254266284Zinc fingerC2H2-type 2
TgeneARMC4chr10:3822298chr10:28196706ENST00000305242-1520828_8678311045RepeatNote=ARM 6
TgeneARMC4chr10:3822298chr10:28196706ENST00000305242-1520871_9108311045RepeatNote=ARM 7
TgeneARMC4chr10:3822298chr10:28196706ENST00000305242-1520912_9518311045RepeatNote=ARM 8
TgeneARMC4chr10:3822298chr10:28196706ENST00000305242-1520953_9928311045RepeatNote=ARM 9
TgeneARMC4chr10:3822298chr10:28196706ENST00000305242-1520994_10338311045RepeatNote=ARM 10

- In-frame and not-retained protein feature among the 13 regional features.
>>>>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneKLF6chr10:3822298chr10:28196706ENST00000469435-12200_224-60282Zinc fingerC2H2-type 1
HgeneKLF6chr10:3822298chr10:28196706ENST00000469435-12230_254-60282Zinc fingerC2H2-type 2
HgeneKLF6chr10:3822298chr10:28196706ENST00000469435-12260_282-60282Zinc fingerC2H2-type 3
HgeneKLF6chr10:3822298chr10:28196706ENST00000497571-34260_282266284Zinc fingerC2H2-type 3
HgeneKLF6chr10:3822298chr10:28196706ENST00000542957-13200_224-89238Zinc fingerC2H2-type 1
HgeneKLF6chr10:3822298chr10:28196706ENST00000542957-13230_254-89238Zinc fingerC2H2-type 2
HgeneKLF6chr10:3822298chr10:28196706ENST00000542957-13260_282-89238Zinc fingerC2H2-type 3
TgeneARMC4chr10:3822298chr10:28196706ENST00000305242-1520484_5238311045RepeatNote=ARM 1
TgeneARMC4chr10:3822298chr10:28196706ENST00000305242-1520525_5648311045RepeatNote=ARM 2
TgeneARMC4chr10:3822298chr10:28196706ENST00000305242-1520622_6618311045RepeatNote=ARM 3
TgeneARMC4chr10:3822298chr10:28196706ENST00000305242-1520663_7028311045RepeatNote=ARM 4
TgeneARMC4chr10:3822298chr10:28196706ENST00000305242-1520746_7858311045RepeatNote=ARM 5


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FusionGeneSequence for KLF6_ARMC4


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_KLF6_ENST00000497571_chr10_3822298_-_ARMC4_ENST00000537576_chr10_28196706_-_449aa
MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQEDLWTKIILAREKKEESELKISSSPPEDTL
ISPSFCYNLETNSLNSDVSSESSDSSEELSPTAKFTSDPIGEVLVSSGKLSSSVTSTPPSSPELSREPSQLWGCVPGELPSPGKVRSGTS
GKPGDKGNGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHTGEKPYRCSWEGCEWRFARSDELTRHFRKHTGAKPFKCSHCDRIID
RLDGVRLLWSLLKNPHPDVKASAAWALCPCIKNAKDAGEMVRSFVGGLELIVNLLKSDNKEVLASVCAAITNIAKDQENLAVITDHGVVP

>In-frame_KLF6_ENST00000497571_chr10_3822298_-_ARMC4_ENST00000305242_chr10_28196706_-_480aa
MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQEDLWTKIILAREKKEESELKISSSPPEDTL
ISPSFCYNLETNSLNSDVSSESSDSSEELSPTAKFTSDPIGEVLVSSGKLSSSVTSTPPSSPELSREPSQLWGCVPGELPSPGKVRSGTS
GKPGDKGNGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHTGEKPYRCSWEGCEWRFARSDELTRHFRKHTGAKPFKCSHCDRIID
RLDGVRLLWSLLKNPHPDVKASAAWALCPCIKNAKDAGEMVRSFVGGLELIVNLLKSDNKEVLASVCAAITNIAKDQENLAVITDHGVVP
LLSKLANTNNNKLRHHLAEAISRCCMWGRNRVAFGEHKAVAPLVRYLKSNDTNVHRATAQALYQLSEDADNCITMHENGAVKLLLDMVGS

>In-frame_KLF6_ENST00000497571_chr10_3822298_-_ARMC4_ENST00000545014_chr10_28196706_-_523aa
MDVLPMCSIFQELQIVHETGYFSALPSLEEYWQQTCLELERYLQSEPCYVSASEIKFDSQEDLWTKIILAREKKEESELKISSSPPEDTL
ISPSFCYNLETNSLNSDVSSESSDSSEELSPTAKFTSDPIGEVLVSSGKLSSSVTSTPPSSPELSREPSQLWGCVPGELPSPGKVRSGTS
GKPGDKGNGDASPDGRRRVHRCHFNGCRKVYTKSSHLKAHQRTHTGEKPYRCSWEGCEWRFARSDELTRHFRKHTGAKPFKCSHCDRIID
RLDGVRLLWSLLKNPHPDVKASAAWALCPCIKNAKDAGEMVRSFVGGLELIVNLLKSDNKEVLASVCAAITNIAKDQENLAVITDHGVVP
LLSKLANTNNNKLRHHLAEAISRCCMWGRNRVAFGEHKAVAPLVRYLKSNDTNVHRATAQALYQLSEDADNCITMHENGAVKTESRHVAR


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_KLF6_ENST00000497571_chr10_3822298_-_ARMC4_ENST00000537576_chr10_28196706_-_1347nt
ATGGACGTGCTCCCCATGTGCAGCATCTTCCAGGAGCTCCAGATCGTGCACGAGACCGGCTACTTCTCGGCGCTGCCGTCTCTGGAGGAG
TACTGGCAACAGACCTGCCTAGAGCTGGAACGTTACCTCCAGAGCGAGCCCTGCTATGTTTCAGCCTCAGAAATCAAATTTGACAGCCAG
GAAGATCTGTGGACCAAAATCATTCTGGCTCGGGAGAAAAAGGAGGAATCCGAACTGAAGATATCTTCCAGTCCTCCAGAGGACACTCTC
ATCAGCCCGAGCTTTTGTTACAACTTAGAGACCAACAGCCTGAACTCAGATGTCAGCAGCGAATCCTCTGACAGCTCCGAGGAACTTTCT
CCCACGGCCAAGTTTACCTCCGACCCCATTGGCGAAGTTTTGGTCAGCTCGGGAAAATTGAGCTCCTCTGTCACCTCCACGCCTCCATCT
TCTCCGGAACTGAGCAGGGAACCTTCTCAACTGTGGGGTTGCGTGCCCGGGGAGCTGCCCTCGCCAGGGAAGGTGCGCAGCGGGACTTCG
GGGAAGCCAGGTGACAAGGGAAATGGCGATGCCTCCCCCGACGGCAGGAGGAGGGTGCACCGGTGCCACTTTAACGGCTGCAGGAAAGTT
TACACCAAAAGCTCCCACTTGAAAGCACACCAGCGGACGCACACAGGAGAAAAGCCTTACAGATGCTCATGGGAAGGGTGTGAGTGGCGT
TTTGCAAGAAGTGATGAGTTAACCAGGCACTTCCGAAAGCACACCGGGGCCAAGCCTTTTAAATGCTCCCACTGTGACAGGATAATTGAT
CGCTTAGATGGAGTTCGTTTGTTGTGGTCCCTGCTGAAAAATCCTCACCCAGACGTGAAGGCCAGCGCAGCATGGGCACTCTGTCCATGC
ATCAAAAATGCAAAGGATGCTGGGGAAATGGTTCGTTCCTTTGTTGGTGGTTTGGAACTTATTGTCAATTTACTGAAATCAGATAACAAA
GAAGTTCTGGCAAGTGTATGTGCTGCCATTACCAACATAGCAAAAGATCAAGAAAATTTAGCTGTTATCACAGATCATGGAGTTGTTCCT
TTATTGTCCAAACTGGCAAATACAAATAACAATAAATTGAGACATCATCTAGCAGAAGCTATTTCACGTTGCTGTATGTGGGGCAGGAAT
AGAGTGGCCTTCGGTGAGCACAAAGCAGTGGCTCCACTAGTGCGTTATCTGAAATCAAATGACACCAACGTGCATCGGGCGACAGCTCAG

>In-frame_KLF6_ENST00000497571_chr10_3822298_-_ARMC4_ENST00000305242_chr10_28196706_-_1440nt
ATGGACGTGCTCCCCATGTGCAGCATCTTCCAGGAGCTCCAGATCGTGCACGAGACCGGCTACTTCTCGGCGCTGCCGTCTCTGGAGGAG
TACTGGCAACAGACCTGCCTAGAGCTGGAACGTTACCTCCAGAGCGAGCCCTGCTATGTTTCAGCCTCAGAAATCAAATTTGACAGCCAG
GAAGATCTGTGGACCAAAATCATTCTGGCTCGGGAGAAAAAGGAGGAATCCGAACTGAAGATATCTTCCAGTCCTCCAGAGGACACTCTC
ATCAGCCCGAGCTTTTGTTACAACTTAGAGACCAACAGCCTGAACTCAGATGTCAGCAGCGAATCCTCTGACAGCTCCGAGGAACTTTCT
CCCACGGCCAAGTTTACCTCCGACCCCATTGGCGAAGTTTTGGTCAGCTCGGGAAAATTGAGCTCCTCTGTCACCTCCACGCCTCCATCT
TCTCCGGAACTGAGCAGGGAACCTTCTCAACTGTGGGGTTGCGTGCCCGGGGAGCTGCCCTCGCCAGGGAAGGTGCGCAGCGGGACTTCG
GGGAAGCCAGGTGACAAGGGAAATGGCGATGCCTCCCCCGACGGCAGGAGGAGGGTGCACCGGTGCCACTTTAACGGCTGCAGGAAAGTT
TACACCAAAAGCTCCCACTTGAAAGCACACCAGCGGACGCACACAGGAGAAAAGCCTTACAGATGCTCATGGGAAGGGTGTGAGTGGCGT
TTTGCAAGAAGTGATGAGTTAACCAGGCACTTCCGAAAGCACACCGGGGCCAAGCCTTTTAAATGCTCCCACTGTGACAGGATAATTGAT
CGCTTAGATGGAGTTCGTTTGTTGTGGTCCCTGCTGAAAAATCCTCACCCAGACGTGAAGGCCAGCGCAGCATGGGCACTCTGTCCATGC
ATCAAAAATGCAAAGGATGCTGGGGAAATGGTTCGTTCCTTTGTTGGTGGTTTGGAACTTATTGTCAATTTACTGAAATCAGATAACAAA
GAAGTTCTGGCAAGTGTATGTGCTGCCATTACCAACATAGCAAAAGATCAAGAAAATTTAGCTGTTATCACAGATCATGGAGTTGTTCCT
TTATTGTCCAAACTGGCAAATACAAATAACAATAAATTGAGACATCATCTAGCAGAAGCTATTTCACGTTGCTGTATGTGGGGCAGGAAT
AGAGTGGCCTTCGGTGAGCACAAAGCAGTGGCTCCACTAGTGCGTTATCTGAAATCAAATGACACCAACGTGCATCGGGCGACAGCTCAG
GCCTTGTACCAACTCTCAGAAGACGCCGATAACTGCATCACCATGCATGAGAATGGTGCAGTAAAGCTTCTACTGGATATGGTTGGGTCC
CCTGACCAGGATCTCCAGGAAGCTGCAGCTGGTTGTATATCCAATATCCGCAGGCTGGCTCTTGCTACAGAGAAGGCAAGATACACTTGA

>In-frame_KLF6_ENST00000497571_chr10_3822298_-_ARMC4_ENST00000545014_chr10_28196706_-_1569nt
ATGGACGTGCTCCCCATGTGCAGCATCTTCCAGGAGCTCCAGATCGTGCACGAGACCGGCTACTTCTCGGCGCTGCCGTCTCTGGAGGAG
TACTGGCAACAGACCTGCCTAGAGCTGGAACGTTACCTCCAGAGCGAGCCCTGCTATGTTTCAGCCTCAGAAATCAAATTTGACAGCCAG
GAAGATCTGTGGACCAAAATCATTCTGGCTCGGGAGAAAAAGGAGGAATCCGAACTGAAGATATCTTCCAGTCCTCCAGAGGACACTCTC
ATCAGCCCGAGCTTTTGTTACAACTTAGAGACCAACAGCCTGAACTCAGATGTCAGCAGCGAATCCTCTGACAGCTCCGAGGAACTTTCT
CCCACGGCCAAGTTTACCTCCGACCCCATTGGCGAAGTTTTGGTCAGCTCGGGAAAATTGAGCTCCTCTGTCACCTCCACGCCTCCATCT
TCTCCGGAACTGAGCAGGGAACCTTCTCAACTGTGGGGTTGCGTGCCCGGGGAGCTGCCCTCGCCAGGGAAGGTGCGCAGCGGGACTTCG
GGGAAGCCAGGTGACAAGGGAAATGGCGATGCCTCCCCCGACGGCAGGAGGAGGGTGCACCGGTGCCACTTTAACGGCTGCAGGAAAGTT
TACACCAAAAGCTCCCACTTGAAAGCACACCAGCGGACGCACACAGGAGAAAAGCCTTACAGATGCTCATGGGAAGGGTGTGAGTGGCGT
TTTGCAAGAAGTGATGAGTTAACCAGGCACTTCCGAAAGCACACCGGGGCCAAGCCTTTTAAATGCTCCCACTGTGACAGGATAATTGAT
CGCTTAGATGGAGTTCGTTTGTTGTGGTCCCTGCTGAAAAATCCTCACCCAGACGTGAAGGCCAGCGCAGCATGGGCACTCTGTCCATGC
ATCAAAAATGCAAAGGATGCTGGGGAAATGGTTCGTTCCTTTGTTGGTGGTTTGGAACTTATTGTCAATTTACTGAAATCAGATAACAAA
GAAGTTCTGGCAAGTGTATGTGCTGCCATTACCAACATAGCAAAAGATCAAGAAAATTTAGCTGTTATCACAGATCATGGAGTTGTTCCT
TTATTGTCCAAACTGGCAAATACAAATAACAATAAATTGAGACATCATCTAGCAGAAGCTATTTCACGTTGCTGTATGTGGGGCAGGAAT
AGAGTGGCCTTCGGTGAGCACAAAGCAGTGGCTCCACTAGTGCGTTATCTGAAATCAAATGACACCAACGTGCATCGGGCGACAGCTCAG
GCCTTGTACCAACTCTCAGAAGACGCCGATAACTGCATCACCATGCATGAGAATGGTGCAGTAAAGACAGAGTCTCGCCATGTCGCCAGG
CTAGAGTGCAGTGACAACGATCTTGGCTCACTGCAACCTCCACCTCCCGGATTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGG
GATTACAGCTTCTACTGGATATGGTTGGGTCCCCTGACCAGGATCTCCAGGAAGCTGCAGCTGGTTGTATATCCAATATCCGCAGGCTGG


* Fusion transcript sequences (Full-length transcript).
>In-frame_KLF6_ENST00000497571_chr10_3822298_-_ARMC4_ENST00000537576_chr10_28196706_-_1879nt
GGCGGGGGCGGAGGGGGAGGCTGGCAGCGGAGCTTTGAATAGGGAAGTTTTGCAGGGGTTACGTTTGCAGTCAGTCCGGTGTTTGCAAAT
ATTGTGTGGGCTCCGCGCGCTGCGGGCTGCGGGAGGGTCCGGCCGGGCGTCTCTGCGAGCCTGGAGTTTGCATGAAACTTTCACCTGCGC
TCCGGGGAGACTTTCGGCTCCGGCTCCCACCGCGCGCCTCGCCGCCCTCGCGACCGCGGGCTCCGTCCAACCCGGCCCGACATGGACGTG
CTCCCCATGTGCAGCATCTTCCAGGAGCTCCAGATCGTGCACGAGACCGGCTACTTCTCGGCGCTGCCGTCTCTGGAGGAGTACTGGCAA
CAGACCTGCCTAGAGCTGGAACGTTACCTCCAGAGCGAGCCCTGCTATGTTTCAGCCTCAGAAATCAAATTTGACAGCCAGGAAGATCTG
TGGACCAAAATCATTCTGGCTCGGGAGAAAAAGGAGGAATCCGAACTGAAGATATCTTCCAGTCCTCCAGAGGACACTCTCATCAGCCCG
AGCTTTTGTTACAACTTAGAGACCAACAGCCTGAACTCAGATGTCAGCAGCGAATCCTCTGACAGCTCCGAGGAACTTTCTCCCACGGCC
AAGTTTACCTCCGACCCCATTGGCGAAGTTTTGGTCAGCTCGGGAAAATTGAGCTCCTCTGTCACCTCCACGCCTCCATCTTCTCCGGAA
CTGAGCAGGGAACCTTCTCAACTGTGGGGTTGCGTGCCCGGGGAGCTGCCCTCGCCAGGGAAGGTGCGCAGCGGGACTTCGGGGAAGCCA
GGTGACAAGGGAAATGGCGATGCCTCCCCCGACGGCAGGAGGAGGGTGCACCGGTGCCACTTTAACGGCTGCAGGAAAGTTTACACCAAA
AGCTCCCACTTGAAAGCACACCAGCGGACGCACACAGGAGAAAAGCCTTACAGATGCTCATGGGAAGGGTGTGAGTGGCGTTTTGCAAGA
AGTGATGAGTTAACCAGGCACTTCCGAAAGCACACCGGGGCCAAGCCTTTTAAATGCTCCCACTGTGACAGGATAATTGATCGCTTAGAT
GGAGTTCGTTTGTTGTGGTCCCTGCTGAAAAATCCTCACCCAGACGTGAAGGCCAGCGCAGCATGGGCACTCTGTCCATGCATCAAAAAT
GCAAAGGATGCTGGGGAAATGGTTCGTTCCTTTGTTGGTGGTTTGGAACTTATTGTCAATTTACTGAAATCAGATAACAAAGAAGTTCTG
GCAAGTGTATGTGCTGCCATTACCAACATAGCAAAAGATCAAGAAAATTTAGCTGTTATCACAGATCATGGAGTTGTTCCTTTATTGTCC
AAACTGGCAAATACAAATAACAATAAATTGAGACATCATCTAGCAGAAGCTATTTCACGTTGCTGTATGTGGGGCAGGAATAGAGTGGCC
TTCGGTGAGCACAAAGCAGTGGCTCCACTAGTGCGTTATCTGAAATCAAATGACACCAACGTGCATCGGGCGACAGCTCAGGCCTTGTAC
CAACTCTCAGAAGACGCCGATAACTGCATCACCATGCATGAGAATGGTGCAGTAAAGAAAAACATTTTTATCTCTTAGAAGAAATGACTA
GAGTGAACCTCAAAACCTCATCTGCAAATTGACTCATGGATCCATAAATTCACTCCTGGACCCCAGTTGAGAACCCTGACCCTAAGGATT
CTGAGCCTGCAAACCCTGGAGAAAAGTGGGGTTTGGCTGATCTCAGCTGGGCCAGGTGAGGATTAGCACCAGGTTGCAAGTAGATTCAAT

>In-frame_KLF6_ENST00000497571_chr10_3822298_-_ARMC4_ENST00000305242_chr10_28196706_-_2045nt
GGCGGGGGCGGAGGGGGAGGCTGGCAGCGGAGCTTTGAATAGGGAAGTTTTGCAGGGGTTACGTTTGCAGTCAGTCCGGTGTTTGCAAAT
ATTGTGTGGGCTCCGCGCGCTGCGGGCTGCGGGAGGGTCCGGCCGGGCGTCTCTGCGAGCCTGGAGTTTGCATGAAACTTTCACCTGCGC
TCCGGGGAGACTTTCGGCTCCGGCTCCCACCGCGCGCCTCGCCGCCCTCGCGACCGCGGGCTCCGTCCAACCCGGCCCGACATGGACGTG
CTCCCCATGTGCAGCATCTTCCAGGAGCTCCAGATCGTGCACGAGACCGGCTACTTCTCGGCGCTGCCGTCTCTGGAGGAGTACTGGCAA
CAGACCTGCCTAGAGCTGGAACGTTACCTCCAGAGCGAGCCCTGCTATGTTTCAGCCTCAGAAATCAAATTTGACAGCCAGGAAGATCTG
TGGACCAAAATCATTCTGGCTCGGGAGAAAAAGGAGGAATCCGAACTGAAGATATCTTCCAGTCCTCCAGAGGACACTCTCATCAGCCCG
AGCTTTTGTTACAACTTAGAGACCAACAGCCTGAACTCAGATGTCAGCAGCGAATCCTCTGACAGCTCCGAGGAACTTTCTCCCACGGCC
AAGTTTACCTCCGACCCCATTGGCGAAGTTTTGGTCAGCTCGGGAAAATTGAGCTCCTCTGTCACCTCCACGCCTCCATCTTCTCCGGAA
CTGAGCAGGGAACCTTCTCAACTGTGGGGTTGCGTGCCCGGGGAGCTGCCCTCGCCAGGGAAGGTGCGCAGCGGGACTTCGGGGAAGCCA
GGTGACAAGGGAAATGGCGATGCCTCCCCCGACGGCAGGAGGAGGGTGCACCGGTGCCACTTTAACGGCTGCAGGAAAGTTTACACCAAA
AGCTCCCACTTGAAAGCACACCAGCGGACGCACACAGGAGAAAAGCCTTACAGATGCTCATGGGAAGGGTGTGAGTGGCGTTTTGCAAGA
AGTGATGAGTTAACCAGGCACTTCCGAAAGCACACCGGGGCCAAGCCTTTTAAATGCTCCCACTGTGACAGGATAATTGATCGCTTAGAT
GGAGTTCGTTTGTTGTGGTCCCTGCTGAAAAATCCTCACCCAGACGTGAAGGCCAGCGCAGCATGGGCACTCTGTCCATGCATCAAAAAT
GCAAAGGATGCTGGGGAAATGGTTCGTTCCTTTGTTGGTGGTTTGGAACTTATTGTCAATTTACTGAAATCAGATAACAAAGAAGTTCTG
GCAAGTGTATGTGCTGCCATTACCAACATAGCAAAAGATCAAGAAAATTTAGCTGTTATCACAGATCATGGAGTTGTTCCTTTATTGTCC
AAACTGGCAAATACAAATAACAATAAATTGAGACATCATCTAGCAGAAGCTATTTCACGTTGCTGTATGTGGGGCAGGAATAGAGTGGCC
TTCGGTGAGCACAAAGCAGTGGCTCCACTAGTGCGTTATCTGAAATCAAATGACACCAACGTGCATCGGGCGACAGCTCAGGCCTTGTAC
CAACTCTCAGAAGACGCCGATAACTGCATCACCATGCATGAGAATGGTGCAGTAAAGCTTCTACTGGATATGGTTGGGTCCCCTGACCAG
GATCTCCAGGAAGCTGCAGCTGGTTGTATATCCAATATCCGCAGGCTGGCTCTTGCTACAGAGAAGGCAAGATACACTTGAAATTTAAAT
GGACATTACAAGCTATCAAATTCTACATGACACAGGACATGTCACTCCCATGGCCAGAAAGCCTAAATTGGGAAACAGTTGTTAGCAAAC
CCTTTCAACCATCTAAATGAAAACACACAAATTGAAAATGCACAGAATGTTTTTCATCTGAAAATTGCATGGAGACTTTTGTTTCTATTT
AATGTTTTCGAGATATGACATGTGATAAGATGGAAAGCCAATAAACCTGTGATAAGTTTCTAAGAATATGAGAATATACGTATATGATGT

>In-frame_KLF6_ENST00000497571_chr10_3822298_-_ARMC4_ENST00000545014_chr10_28196706_-_2165nt
GGCGGGGGCGGAGGGGGAGGCTGGCAGCGGAGCTTTGAATAGGGAAGTTTTGCAGGGGTTACGTTTGCAGTCAGTCCGGTGTTTGCAAAT
ATTGTGTGGGCTCCGCGCGCTGCGGGCTGCGGGAGGGTCCGGCCGGGCGTCTCTGCGAGCCTGGAGTTTGCATGAAACTTTCACCTGCGC
TCCGGGGAGACTTTCGGCTCCGGCTCCCACCGCGCGCCTCGCCGCCCTCGCGACCGCGGGCTCCGTCCAACCCGGCCCGACATGGACGTG
CTCCCCATGTGCAGCATCTTCCAGGAGCTCCAGATCGTGCACGAGACCGGCTACTTCTCGGCGCTGCCGTCTCTGGAGGAGTACTGGCAA
CAGACCTGCCTAGAGCTGGAACGTTACCTCCAGAGCGAGCCCTGCTATGTTTCAGCCTCAGAAATCAAATTTGACAGCCAGGAAGATCTG
TGGACCAAAATCATTCTGGCTCGGGAGAAAAAGGAGGAATCCGAACTGAAGATATCTTCCAGTCCTCCAGAGGACACTCTCATCAGCCCG
AGCTTTTGTTACAACTTAGAGACCAACAGCCTGAACTCAGATGTCAGCAGCGAATCCTCTGACAGCTCCGAGGAACTTTCTCCCACGGCC
AAGTTTACCTCCGACCCCATTGGCGAAGTTTTGGTCAGCTCGGGAAAATTGAGCTCCTCTGTCACCTCCACGCCTCCATCTTCTCCGGAA
CTGAGCAGGGAACCTTCTCAACTGTGGGGTTGCGTGCCCGGGGAGCTGCCCTCGCCAGGGAAGGTGCGCAGCGGGACTTCGGGGAAGCCA
GGTGACAAGGGAAATGGCGATGCCTCCCCCGACGGCAGGAGGAGGGTGCACCGGTGCCACTTTAACGGCTGCAGGAAAGTTTACACCAAA
AGCTCCCACTTGAAAGCACACCAGCGGACGCACACAGGAGAAAAGCCTTACAGATGCTCATGGGAAGGGTGTGAGTGGCGTTTTGCAAGA
AGTGATGAGTTAACCAGGCACTTCCGAAAGCACACCGGGGCCAAGCCTTTTAAATGCTCCCACTGTGACAGGATAATTGATCGCTTAGAT
GGAGTTCGTTTGTTGTGGTCCCTGCTGAAAAATCCTCACCCAGACGTGAAGGCCAGCGCAGCATGGGCACTCTGTCCATGCATCAAAAAT
GCAAAGGATGCTGGGGAAATGGTTCGTTCCTTTGTTGGTGGTTTGGAACTTATTGTCAATTTACTGAAATCAGATAACAAAGAAGTTCTG
GCAAGTGTATGTGCTGCCATTACCAACATAGCAAAAGATCAAGAAAATTTAGCTGTTATCACAGATCATGGAGTTGTTCCTTTATTGTCC
AAACTGGCAAATACAAATAACAATAAATTGAGACATCATCTAGCAGAAGCTATTTCACGTTGCTGTATGTGGGGCAGGAATAGAGTGGCC
TTCGGTGAGCACAAAGCAGTGGCTCCACTAGTGCGTTATCTGAAATCAAATGACACCAACGTGCATCGGGCGACAGCTCAGGCCTTGTAC
CAACTCTCAGAAGACGCCGATAACTGCATCACCATGCATGAGAATGGTGCAGTAAAGACAGAGTCTCGCCATGTCGCCAGGCTAGAGTGC
AGTGACAACGATCTTGGCTCACTGCAACCTCCACCTCCCGGATTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGC
TTCTACTGGATATGGTTGGGTCCCCTGACCAGGATCTCCAGGAAGCTGCAGCTGGTTGTATATCCAATATCCGCAGGCTGGCTCTTGCTA
CAGAGAAGGCAAGATACACTTGAAATTTAAATGGACATTACAAGCTATCAAATTCTACATGACACAGGACATGTCACTCCCATGGCCAGA
AAGCCTAAATTGGGAAACAGTTGTTAGCAAACCCTTTCAACCATCTAAATGAAAACACACAAATTGAAAATGCACAGAATGTTTTTCATC
TGAAAATTGCATGGAGACTTTTGTTTCTATTTAATGTTTTCGAGATATGACATGTGATAAGATGGAAAGCCAATAAACCTGTGATAAGTT
TCTAAGAATATGAGAATATACGTATATGATGTATTTTTAGTTCAGTGATGCTTTTGTATTTGTGGCGATTTTAATAAAAAGGATATGGCC


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FusionGenePPI for KLF6_ARMC4


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
KLF6EHMT2, APOM, GTF3C1, PNO1, POLA2, KLF4, SP1, NR0B2, E2F1, HDAC3, NUFIP1, TAF9, FBL, NOP56, LCOR, APP, RUNX1, TRIM25ARMC4


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for KLF6_ARMC4


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for KLF6_ARMC4


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneKLF6C0023893Liver Cirrhosis, Experimental1CTD_human
TgeneARMC4C3809548CILIARY DYSKINESIA, PRIMARY, 231UNIPROT