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Fusion gene ID: 18985 |
FusionGeneSummary for KLF3_SCFD2 |
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Fusion gene information | Fusion gene name: KLF3_SCFD2 | Fusion gene ID: 18985 | Hgene | Tgene | Gene symbol | KLF3 | SCFD2 | Gene ID | 51274 | 152579 |
Gene name | Kruppel like factor 3 | sec1 family domain containing 2 | |
Synonyms | BKLF | STXBP1L1 | |
Cytomap | 4p14 | 4q12 | |
Type of gene | protein-coding | protein-coding | |
Description | Krueppel-like factor 3CACCC-box-binding protein BKLFKruppel-like factor 3 (basic)TEF-2basic Kruppel-like factorbasic krueppel-like factorbasic kruppel like factortranscript ch138 | sec1 family domain-containing protein 2syntaxin binding protein 1-like 1 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | P57682 | Q8WU76 | |
Ensembl transtripts involved in fusion gene | ENST00000261438, ENST00000514033, | ENST00000401642, ENST00000388940, | |
Fusion gene scores | * DoF score | 3 X 3 X 3=27 | 10 X 8 X 10=800 |
# samples | 3 | 11 | |
** MAII score | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(11/800*10)=-2.86249647625006 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: KLF3 [Title/Abstract] AND SCFD2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-BH-A0WA-01A | KLF3 | chr4 | 38691500 | + | SCFD2 | chr4 | 54011749 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000261438 | ENST00000401642 | KLF3 | chr4 | 38691500 | + | SCFD2 | chr4 | 54011749 | - |
Frame-shift | ENST00000261438 | ENST00000388940 | KLF3 | chr4 | 38691500 | + | SCFD2 | chr4 | 54011749 | - |
Frame-shift | ENST00000514033 | ENST00000401642 | KLF3 | chr4 | 38691500 | + | SCFD2 | chr4 | 54011749 | - |
Frame-shift | ENST00000514033 | ENST00000388940 | KLF3 | chr4 | 38691500 | + | SCFD2 | chr4 | 54011749 | - |
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FusionProtFeatures for KLF3_SCFD2 |
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Hgene | Tgene |
KLF3 | SCFD2 |
Binds to the CACCC box of erythroid cell-expressedgenes. May play a role in hematopoiesis (By similarity).{ECO:0000250}. | May be involved in protein transport. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for KLF3_SCFD2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for KLF3_SCFD2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
KLF3 | FHL3, CTBP2, KDM1A, SUV39H2, CTBP1, DVL3, TRAF2, EHMT2, LHX8, TRIM25 | SCFD2 | USE1, STX12, NAPG, SIRT2, RINT1, NBAS, SEC22B, BNIP1, ZW10, C19orf25, VAMP4, STX18 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for KLF3_SCFD2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for KLF3_SCFD2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |