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Fusion gene ID: 18570 |
FusionGeneSummary for KIAA0232_LRCH3 |
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Fusion gene information | Fusion gene name: KIAA0232_LRCH3 | Fusion gene ID: 18570 | Hgene | Tgene | Gene symbol | KIAA0232 | LRCH3 | Gene ID | 9778 | 84859 |
Gene name | KIAA0232 | leucine rich repeats and calponin homology domain containing 3 | |
Synonyms | - | - | |
Cytomap | 4p16.1 | 3q29 | |
Type of gene | protein-coding | protein-coding | |
Description | uncharacterized protein KIAA0232 | leucine-rich repeat and calponin homology domain-containing protein 3leucine-rich repeats and calponin homology (CH) domain containing 3 | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | Q92628 | Q96II8 | |
Ensembl transtripts involved in fusion gene | ENST00000503278, ENST00000425103, ENST00000307659, | ENST00000438796, ENST00000414675, ENST00000441090, ENST00000334859, ENST00000425562, ENST00000493726, ENST00000536618, | |
Fusion gene scores | * DoF score | 8 X 7 X 4=224 | 6 X 7 X 3=126 |
# samples | 8 | 8 | |
** MAII score | log2(8/224*10)=-1.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/126*10)=-0.655351828612554 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: KIAA0232 [Title/Abstract] AND LRCH3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | STAD | TCGA-R5-A7ZE-01B | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000503278 | ENST00000438796 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
intron-3CDS | ENST00000503278 | ENST00000414675 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
intron-intron | ENST00000503278 | ENST00000441090 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
intron-intron | ENST00000503278 | ENST00000334859 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
intron-intron | ENST00000503278 | ENST00000425562 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
intron-intron | ENST00000503278 | ENST00000493726 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
intron-intron | ENST00000503278 | ENST00000536618 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
Frame-shift | ENST00000425103 | ENST00000438796 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
Frame-shift | ENST00000425103 | ENST00000414675 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
5CDS-intron | ENST00000425103 | ENST00000441090 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
5CDS-intron | ENST00000425103 | ENST00000334859 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
5CDS-intron | ENST00000425103 | ENST00000425562 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
5CDS-intron | ENST00000425103 | ENST00000493726 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
5CDS-intron | ENST00000425103 | ENST00000536618 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
Frame-shift | ENST00000307659 | ENST00000438796 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
Frame-shift | ENST00000307659 | ENST00000414675 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
5CDS-intron | ENST00000307659 | ENST00000441090 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
5CDS-intron | ENST00000307659 | ENST00000334859 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
5CDS-intron | ENST00000307659 | ENST00000425562 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
5CDS-intron | ENST00000307659 | ENST00000493726 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
5CDS-intron | ENST00000307659 | ENST00000536618 | KIAA0232 | chr4 | 6826411 | + | LRCH3 | chr3 | 197541779 | + |
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FusionProtFeatures for KIAA0232_LRCH3 |
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Hgene | Tgene |
KIAA0232 | LRCH3 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for KIAA0232_LRCH3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for KIAA0232_LRCH3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
KIAA0232 | SLC35F6, YWHAZ, YWHAE, ALB, DYRK1B, DYRK1A, SOCS6, USP36, FOXD4L6, AP2M1, NAT8L, KIAA1683, ZBBX, SSH3, ADAMTS4, FRMD1, RPL28, SIRT6, BRINP3, TPTE2, TRIM41, DOCK5, C4orf26, NOL9, RGS3, ZNF408, FOXD4, TSPYL6, TSPYL1, HCFC2, FGFRL1 | LRCH3 | PAN2, DOCK7, DOCK8, ACTA1, BASP1, CALD1, CORO1C, CRLF3, DBN1, DOCK6, LIMA1, LRCH1, LRCH2, RSU1, SUGT1, TPM1, MOB1A, MOB1B, CEP57, PIH1D1, NTRK1, CAPZA2, PARD6A, SMEK1, PARD6B, MLKL, VCPIP1, TMOD3, LRCH4, DYRK1A, CBX5, DCAF7 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for KIAA0232_LRCH3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for KIAA0232_LRCH3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |