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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 18538

FusionGeneSummary for KHDRBS3_PACRG

check button Fusion gene summary
Fusion gene informationFusion gene name: KHDRBS3_PACRG
Fusion gene ID: 18538
HgeneTgene
Gene symbol

KHDRBS3

PACRG

Gene ID

10656

135138

Gene nameKH RNA binding domain containing, signal transduction associated 3parkin coregulated
SynonymsEtle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoileGLUP|HAK005771|PARK2CRG
Cytomap

8q24.23

6q26

Type of geneprotein-codingprotein-coding
DescriptionKH domain-containing, RNA-binding, signal transduction-associated protein 3KH domain containing, RNA binding, signal transduction associated 3RNA-binding protein T-StarSam68-like phosphotyrosine protein, T-STARsam68-like mammalian protein 2parkin coregulated gene proteinPARK2 co-regulatedPARK2 coregulatedmolecular chaperone/chaperonin-binding proteinparkin co-regulated gene protein
Modification date2018052220180523
UniProtAcc

O75525

Q96M98

Ensembl transtripts involved in fusion geneENST00000355849, ENST00000520981, 
ENST00000522578, 
ENST00000337019, 
ENST00000366889, ENST00000366888, 
ENST00000542669, 
Fusion gene scores* DoF score6 X 4 X 4=968 X 6 X 11=528
# samples 612
** MAII scorelog2(6/96*10)=-0.678071905112638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(12/528*10)=-2.13750352374993
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: KHDRBS3 [Title/Abstract] AND PACRG [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationTumor suppressor gene involved fusion gene, in-frame but not retained their domain.
Tumor suppressor gene involved fusion gene, retained protein feature but frameshift.
DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneKHDRBS3

GO:0051259

protein complex oligomerization

10332027|10749975


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVSKCMTCGA-ER-A2ND-06AKHDRBS3chr8

136555013

+PACRGchr6

163483182

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000355849ENST00000337019KHDRBS3chr8

136555013

+PACRGchr6

163483182

+
In-frameENST00000355849ENST00000366889KHDRBS3chr8

136555013

+PACRGchr6

163483182

+
In-frameENST00000355849ENST00000366888KHDRBS3chr8

136555013

+PACRGchr6

163483182

+
5CDS-intronENST00000355849ENST00000542669KHDRBS3chr8

136555013

+PACRGchr6

163483182

+
intron-3CDSENST00000520981ENST00000337019KHDRBS3chr8

136555013

+PACRGchr6

163483182

+
intron-3CDSENST00000520981ENST00000366889KHDRBS3chr8

136555013

+PACRGchr6

163483182

+
intron-3CDSENST00000520981ENST00000366888KHDRBS3chr8

136555013

+PACRGchr6

163483182

+
intron-intronENST00000520981ENST00000542669KHDRBS3chr8

136555013

+PACRGchr6

163483182

+
intron-3CDSENST00000522578ENST00000337019KHDRBS3chr8

136555013

+PACRGchr6

163483182

+
intron-3CDSENST00000522578ENST00000366889KHDRBS3chr8

136555013

+PACRGchr6

163483182

+
intron-3CDSENST00000522578ENST00000366888KHDRBS3chr8

136555013

+PACRGchr6

163483182

+
intron-intronENST00000522578ENST00000542669KHDRBS3chr8

136555013

+PACRGchr6

163483182

+

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FusionProtFeatures for KHDRBS3_PACRG


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
KHDRBS3

O75525

PACRG

Q96M98

RNA-binding protein that plays a role in the regulationof alternative splicing and influences mRNA splice site selectionand exon inclusion. Binds preferentially to the 5'-[AU]UAAA-3'motif in vitro. Binds optimally to RNA containing 5'-[AU]UAA-3' asa bipartite motif spaced by more than 15 nucleotides. Bindspoly(A). RNA-binding abilities are down-regulated by tyrosinekinase PTK6 (PubMed:10564820, PubMed:19561594, PubMed:26758068).Involved in splice site selection of vascular endothelial growthfactor (PubMed:15901763). In vitro regulates CD44 alternativesplicing by direct binding to purine-rich exonic enhancer (Bysimilarity). Can regulate alternative splicing of neurexins NRXN1-3 in the laminin G-like domain 6 containing the evolutionaryconserved neurexin alternative spliced segment 4 (AS4) involved inneurexin selective targeting to postsynaptic partners such asneuroligins and LRRTM family members (PubMed:26758068). Targeted,cell-type specific splicing regulation of NRXN1 at AS4 is involvedin neuronal glutamatergic synapse function and plasticity (Bysimilarity). May regulate expression of KHDRBS2/SLIM-1 in definedbrain neuron populations by modifying its alternative splicing (Bysimilarity). Can bind FABP9 mRNA (By similarity). May play a roleas a negative regulator of cell growth. Inhibits cellproliferation. {ECO:0000250|UniProtKB:Q9JLP1,ECO:0000250|UniProtKB:Q9R226, ECO:0000269|PubMed:10564820,ECO:0000269|PubMed:15901763, ECO:0000269|PubMed:19561594,ECO:0000269|PubMed:26758068}. (Microbial infection) Involved in post-transcriptionalregulation of HIV-1 gene expression.{ECO:0000269|PubMed:11741900}. Suppresses cell death induced by accumulation ofunfolded Pael receptor (Pael-R, a substrate of Parkin).Facilitates the formation of inclusions consisting of Pael-R,molecular chaperones, protein degradation molecules and itselfwhen proteasome is inhibited. May play an important role in theformation of Lewy bodies and protection of dopaminergic neuronsagainst Parkinson disease. {ECO:0000269|PubMed:14532270}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneKHDRBS3chr8:136555013chr6:163483182ENST00000355849+39250_261108347Compositional biasNote=Pro-rich
HgeneKHDRBS3chr8:136555013chr6:163483182ENST00000355849+39266_316108347Compositional biasNote=Tyr-rich
HgeneKHDRBS3chr8:136555013chr6:163483182ENST00000355849+3961_127108347DomainNote=KH
HgeneKHDRBS3chr8:136555013chr6:163483182ENST00000355849+391_160108347RegionInvolved in homodimerization


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FusionGeneSequence for KHDRBS3_PACRG


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000337019_chr6_163483182_+_308aa
MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEE
TLTKMSILGKGSMRDKAKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTL
KVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKREN

>In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000366889_chr6_163483182_+_269aa
MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEE
TLTKMSILGKGSMRDKAKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTL

>In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000366888_chr6_163483182_+_269aa
MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEE
TLTKMSILGKGSMRDKAKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTL


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000337019_chr6_163483182_+_924nt
ATGGAGGAGAAGTACCTGCCCGAGCTGATGGCGGAGAAGGACTCCCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACCAAGAA
ATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAAAGTACATCGATGTGGTGATTAATAAGAACATGAAGCTGGGACAGAAAGTG
TTAATTCCCGTAAAACAGTTCCCTAAGTTCAACTTTGTGGGGAAACTTTTGGGTCCACGTGGCAATTCTCTGAAGCGTTTACAAGAAGAA
ACCTTGACAAAAATGTCCATCCTTGGGAAAGGTTCCATGAGAGACAAGGCCAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTG
CCTCTGTTTTTTGATGGGCTTTGTGAAATGACATTTCCCTATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGG
AACAAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGATAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTC
AAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATC
TTTAAGAATATGAATGGGTCTTACTCTTTGCCCAGGCTGGAGTGCAGTGGCGCGATCATGGCTCGTTGCAACCTCGACCACCTGGGCTCA
AGTGATCCTCCCACCTCAGCCTCTCAAGTAGCTGAGATTATAGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAAC
ATTGGGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGCGCTACGGAGGAGAAAATGCCTTTATCAACATTAAGTACGTGGTCCCAACC

>In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000366889_chr6_163483182_+_807nt
ATGGAGGAGAAGTACCTGCCCGAGCTGATGGCGGAGAAGGACTCCCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACCAAGAA
ATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAAAGTACATCGATGTGGTGATTAATAAGAACATGAAGCTGGGACAGAAAGTG
TTAATTCCCGTAAAACAGTTCCCTAAGTTCAACTTTGTGGGGAAACTTTTGGGTCCACGTGGCAATTCTCTGAAGCGTTTACAAGAAGAA
ACCTTGACAAAAATGTCCATCCTTGGGAAAGGTTCCATGAGAGACAAGGCCAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTG
CCTCTGTTTTTTGATGGGCTTTGTGAAATGACATTTCCCTATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGG
AACAAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGATAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTC
AAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATC
TTTAAGAATATGAATGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCCAGGAGACACTG

>In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000366888_chr6_163483182_+_807nt
ATGGAGGAGAAGTACCTGCCCGAGCTGATGGCGGAGAAGGACTCCCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACCAAGAA
ATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAAAGTACATCGATGTGGTGATTAATAAGAACATGAAGCTGGGACAGAAAGTG
TTAATTCCCGTAAAACAGTTCCCTAAGTTCAACTTTGTGGGGAAACTTTTGGGTCCACGTGGCAATTCTCTGAAGCGTTTACAAGAAGAA
ACCTTGACAAAAATGTCCATCCTTGGGAAAGGTTCCATGAGAGACAAGGCCAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTG
CCTCTGTTTTTTGATGGGCTTTGTGAAATGACATTTCCCTATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGG
AACAAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGATAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTC
AAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATC
TTTAAGAATATGAATGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCCAGGAGACACTG


* Fusion transcript sequences (Full-length transcript).
>In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000337019_chr6_163483182_+_1838nt
GAGTGCGCGGGGCGGCGCGCGGCGTGCAGGTCGCAGCTGTGGCTCGGGTGCTGGCAGGTGCTGGCGGGACTGGCGGGGATCGCCGTGGAC
TGCCTCAGGGGCGCCGCAGCCCGCTCGGCCCGAGGGCCCGCCTAACCGCGCCGCCCGCGCCCGCTCCTCCTCGGCCCGCGCCCGGAGCGC
GGGGGCCGCCGGCGCTGGGTACTCGGCGGCCACCGGGGATCGGGGCTGAGCGGTCGGTTCCCGCCCCCGTGCCGCCGCCGCCGCCTTCCG
GCCGACCGCCCGGCTTGGCCGCTGCTGCCGCGTCTGGCCCCCGGGTCCCCGCCGCTGGGGGCGCGGGCGGGGTCGGGGGTTGCCGGGCGC
CGCCCCCCGTGCGCCTGGAGTCCACATCCCGGGCCCGGCGGCCGGCGAGCATGGAGGAGAAGTACCTGCCCGAGCTGATGGCGGAGAAGG
ACTCCCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACCAAGAAATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAA
AGTACATCGATGTGGTGATTAATAAGAACATGAAGCTGGGACAGAAAGTGTTAATTCCCGTAAAACAGTTCCCTAAGTTCAACTTTGTGG
GGAAACTTTTGGGTCCACGTGGCAATTCTCTGAAGCGTTTACAAGAAGAAACCTTGACAAAAATGTCCATCCTTGGGAAAGGTTCCATGA
GAGACAAGGCCAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTGCCTCTGTTTTTTGATGGGCTTTGTGAAATGACATTTCCCT
ATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGGAACAAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGA
TAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGG
GCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATCTTTAAGAATATGAATGGGTCTTACTCTTTGCCCAGGCTGG
AGTGCAGTGGCGCGATCATGGCTCGTTGCAACCTCGACCACCTGGGCTCAAGTGATCCTCCCACCTCAGCCTCTCAAGTAGCTGAGATTA
TAGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGC
GCTACGGAGGAGAAAATGCCTTTATCAACATTAAGTACGTGGTCCCAACCTACGAGTCTTGCTTGCTAAACTAACAGTGGCAGCAGCTGG
GACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAGCATCTCATTCCTTGTGACTTCCACAGCTTTCTTTTCTAC
AGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTATTGAGAGCAAGGCTTTCCAATACATAAATAGTGTCTGTTTCTTAG
ATTACAATAGTGTACTGTGCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTT
CAGTTGTATAGACAATAAACTATAATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTT
GTAAGGGAAGAGTTTATGCTGACTGCTTACTAGGTGTTTGTCATGGAAGAGAAGCATGGGTTCAGCAGTGCCTCTCTAGCAGCTGTGCGG

>In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000366889_chr6_163483182_+_1722nt
GAGTGCGCGGGGCGGCGCGCGGCGTGCAGGTCGCAGCTGTGGCTCGGGTGCTGGCAGGTGCTGGCGGGACTGGCGGGGATCGCCGTGGAC
TGCCTCAGGGGCGCCGCAGCCCGCTCGGCCCGAGGGCCCGCCTAACCGCGCCGCCCGCGCCCGCTCCTCCTCGGCCCGCGCCCGGAGCGC
GGGGGCCGCCGGCGCTGGGTACTCGGCGGCCACCGGGGATCGGGGCTGAGCGGTCGGTTCCCGCCCCCGTGCCGCCGCCGCCGCCTTCCG
GCCGACCGCCCGGCTTGGCCGCTGCTGCCGCGTCTGGCCCCCGGGTCCCCGCCGCTGGGGGCGCGGGCGGGGTCGGGGGTTGCCGGGCGC
CGCCCCCCGTGCGCCTGGAGTCCACATCCCGGGCCCGGCGGCCGGCGAGCATGGAGGAGAAGTACCTGCCCGAGCTGATGGCGGAGAAGG
ACTCCCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACCAAGAAATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAA
AGTACATCGATGTGGTGATTAATAAGAACATGAAGCTGGGACAGAAAGTGTTAATTCCCGTAAAACAGTTCCCTAAGTTCAACTTTGTGG
GGAAACTTTTGGGTCCACGTGGCAATTCTCTGAAGCGTTTACAAGAAGAAACCTTGACAAAAATGTCCATCCTTGGGAAAGGTTCCATGA
GAGACAAGGCCAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTGCCTCTGTTTTTTGATGGGCTTTGTGAAATGACATTTCCCT
ATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGGAACAAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGA
TAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGG
GCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATCTTTAAGAATATGAATGTGAACTCCGGAGACGGCATTGACT
ACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGCGCTACGGAGGAGAAAATGCCTTTATCA
ACATTAAGTACGTGGTCCCAACCTACGAGTCTTGCTTGCTAAACTAACAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGG
ATCATCTGTCTCTGTTGCTTTTAGCATCTCATTCCTTGTGACTTCCACAGCTTTCTTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCC
ATTGGACTGTTAGCCCTATTGAGAGCAAGGCTTTCCAATACATAAATAGTGTCTGTTTCTTAGATTACAATAGTGTACTGTGCTTATTTG
TTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAACTATAATT
TTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGACTGCT
TACTAGGTGTTTGTCATGGAAGAGAAGCATGGGTTCAGCAGTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAATAAAA

>In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000366888_chr6_163483182_+_1541nt
GAGTGCGCGGGGCGGCGCGCGGCGTGCAGGTCGCAGCTGTGGCTCGGGTGCTGGCAGGTGCTGGCGGGACTGGCGGGGATCGCCGTGGAC
TGCCTCAGGGGCGCCGCAGCCCGCTCGGCCCGAGGGCCCGCCTAACCGCGCCGCCCGCGCCCGCTCCTCCTCGGCCCGCGCCCGGAGCGC
GGGGGCCGCCGGCGCTGGGTACTCGGCGGCCACCGGGGATCGGGGCTGAGCGGTCGGTTCCCGCCCCCGTGCCGCCGCCGCCGCCTTCCG
GCCGACCGCCCGGCTTGGCCGCTGCTGCCGCGTCTGGCCCCCGGGTCCCCGCCGCTGGGGGCGCGGGCGGGGTCGGGGGTTGCCGGGCGC
CGCCCCCCGTGCGCCTGGAGTCCACATCCCGGGCCCGGCGGCCGGCGAGCATGGAGGAGAAGTACCTGCCCGAGCTGATGGCGGAGAAGG
ACTCCCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACCAAGAAATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAA
AGTACATCGATGTGGTGATTAATAAGAACATGAAGCTGGGACAGAAAGTGTTAATTCCCGTAAAACAGTTCCCTAAGTTCAACTTTGTGG
GGAAACTTTTGGGTCCACGTGGCAATTCTCTGAAGCGTTTACAAGAAGAAACCTTGACAAAAATGTCCATCCTTGGGAAAGGTTCCATGA
GAGACAAGGCCAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTGCCTCTGTTTTTTGATGGGCTTTGTGAAATGACATTTCCCT
ATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGGAACAAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGA
TAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGG
GCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATCTTTAAGAATATGAATGTGAACTCCGGAGACGGCATTGACT
ACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGCGCTACGGAGGAGAAAATGCCTTTATCA
ACATTAAGTACGTGGTCCCAACCTACGAGTCTTGCTTGCTAAACTAACAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGG
ATCATCTGTCTCTGTTGCTTTTAGCATCTCATTCCTTGTGACTTCCACAGCTTTCTTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCC
ATTGGACTGTTAGCCCTATTGAGAGCAAGGCTTTCCAATACATAAATAGTGTCTGTTTCTTAGATTACAATAGTGTACTGTGCTTATTTG
TTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAACTATAATT


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FusionGenePPI for KHDRBS3_PACRG


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
KHDRBS3ZNF408, BAHD1, PSMF1, RBMX, CCDC33, LNX1, NUDT18, RBM7, HNRNPK, KHDRBS2, SIAH1, PRMT1, SGSM2, RPAP2, CACNA1A, RBBP6, SERPINB5, FBXO32, SNRPC, U2AF2, PTBP2, KHDRBS3, KHDRBS1, HNRNPC, FUS, NELFB, INPP5D, PRPF31, NCOA5, MARK4, DMRT3, YTHDC1, BMI1, FBXW11, ATXN2, HNRNPR, SYNCRIP, IFI16, PPP1R13B, G3BP1PACRGHSP90AA1, CCT3, CCT4, CCT5, TCP1, CCT6A, CCT7, CCT2, TUBA1A, TUBB, HSPA4, PARK2, STUB1, DNAJA1, VCP, GPR37, APP, KLHL36, TP53, STIP1, CCDC40


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for KHDRBS3_PACRG


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for KHDRBS3_PACRG


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource