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Fusion gene ID: 18538 |
FusionGeneSummary for KHDRBS3_PACRG |
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Fusion gene information | Fusion gene name: KHDRBS3_PACRG | Fusion gene ID: 18538 | Hgene | Tgene | Gene symbol | KHDRBS3 | PACRG | Gene ID | 10656 | 135138 |
Gene name | KH RNA binding domain containing, signal transduction associated 3 | parkin coregulated | |
Synonyms | Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile | GLUP|HAK005771|PARK2CRG | |
Cytomap | 8q24.23 | 6q26 | |
Type of gene | protein-coding | protein-coding | |
Description | KH domain-containing, RNA-binding, signal transduction-associated protein 3KH domain containing, RNA binding, signal transduction associated 3RNA-binding protein T-StarSam68-like phosphotyrosine protein, T-STARsam68-like mammalian protein 2 | parkin coregulated gene proteinPARK2 co-regulatedPARK2 coregulatedmolecular chaperone/chaperonin-binding proteinparkin co-regulated gene protein | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | O75525 | Q96M98 | |
Ensembl transtripts involved in fusion gene | ENST00000355849, ENST00000520981, ENST00000522578, | ENST00000337019, ENST00000366889, ENST00000366888, ENST00000542669, | |
Fusion gene scores | * DoF score | 6 X 4 X 4=96 | 8 X 6 X 11=528 |
# samples | 6 | 12 | |
** MAII score | log2(6/96*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(12/528*10)=-2.13750352374993 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: KHDRBS3 [Title/Abstract] AND PACRG [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | KHDRBS3 | GO:0051259 | protein complex oligomerization | 10332027|10749975 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SKCM | TCGA-ER-A2ND-06A | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000355849 | ENST00000337019 | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
In-frame | ENST00000355849 | ENST00000366889 | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
In-frame | ENST00000355849 | ENST00000366888 | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
5CDS-intron | ENST00000355849 | ENST00000542669 | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
intron-3CDS | ENST00000520981 | ENST00000337019 | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
intron-3CDS | ENST00000520981 | ENST00000366889 | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
intron-3CDS | ENST00000520981 | ENST00000366888 | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
intron-intron | ENST00000520981 | ENST00000542669 | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
intron-3CDS | ENST00000522578 | ENST00000337019 | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
intron-3CDS | ENST00000522578 | ENST00000366889 | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
intron-3CDS | ENST00000522578 | ENST00000366888 | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
intron-intron | ENST00000522578 | ENST00000542669 | KHDRBS3 | chr8 | 136555013 | + | PACRG | chr6 | 163483182 | + |
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FusionProtFeatures for KHDRBS3_PACRG |
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Hgene | Tgene |
KHDRBS3 | PACRG |
RNA-binding protein that plays a role in the regulationof alternative splicing and influences mRNA splice site selectionand exon inclusion. Binds preferentially to the 5'-[AU]UAAA-3'motif in vitro. Binds optimally to RNA containing 5'-[AU]UAA-3' asa bipartite motif spaced by more than 15 nucleotides. Bindspoly(A). RNA-binding abilities are down-regulated by tyrosinekinase PTK6 (PubMed:10564820, PubMed:19561594, PubMed:26758068).Involved in splice site selection of vascular endothelial growthfactor (PubMed:15901763). In vitro regulates CD44 alternativesplicing by direct binding to purine-rich exonic enhancer (Bysimilarity). Can regulate alternative splicing of neurexins NRXN1-3 in the laminin G-like domain 6 containing the evolutionaryconserved neurexin alternative spliced segment 4 (AS4) involved inneurexin selective targeting to postsynaptic partners such asneuroligins and LRRTM family members (PubMed:26758068). Targeted,cell-type specific splicing regulation of NRXN1 at AS4 is involvedin neuronal glutamatergic synapse function and plasticity (Bysimilarity). May regulate expression of KHDRBS2/SLIM-1 in definedbrain neuron populations by modifying its alternative splicing (Bysimilarity). Can bind FABP9 mRNA (By similarity). May play a roleas a negative regulator of cell growth. Inhibits cellproliferation. {ECO:0000250|UniProtKB:Q9JLP1,ECO:0000250|UniProtKB:Q9R226, ECO:0000269|PubMed:10564820,ECO:0000269|PubMed:15901763, ECO:0000269|PubMed:19561594,ECO:0000269|PubMed:26758068}. (Microbial infection) Involved in post-transcriptionalregulation of HIV-1 gene expression.{ECO:0000269|PubMed:11741900}. | Suppresses cell death induced by accumulation ofunfolded Pael receptor (Pael-R, a substrate of Parkin).Facilitates the formation of inclusions consisting of Pael-R,molecular chaperones, protein degradation molecules and itselfwhen proteasome is inhibited. May play an important role in theformation of Lewy bodies and protection of dopaminergic neuronsagainst Parkinson disease. {ECO:0000269|PubMed:14532270}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >KHDRBS3 | chr8:136555013 | chr6:163483182 | ENST00000355849 | + | 3 | 9 | 250_261 | 108 | 347 | Compositional bias | Note=Pro-rich |
Hgene | >KHDRBS3 | chr8:136555013 | chr6:163483182 | ENST00000355849 | + | 3 | 9 | 266_316 | 108 | 347 | Compositional bias | Note=Tyr-rich |
Hgene | >KHDRBS3 | chr8:136555013 | chr6:163483182 | ENST00000355849 | + | 3 | 9 | 61_127 | 108 | 347 | Domain | Note=KH |
Hgene | >KHDRBS3 | chr8:136555013 | chr6:163483182 | ENST00000355849 | + | 3 | 9 | 1_160 | 108 | 347 | Region | Involved in homodimerization |
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FusionGeneSequence for KHDRBS3_PACRG |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000337019_chr6_163483182_+_308aa MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEE TLTKMSILGKGSMRDKAKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTL KVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSYSLPRLECSGAIMARCNLDHLGSSDPPTSASQVAEIIVNSGDGIDYSQQKREN >In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000366889_chr6_163483182_+_269aa MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEE TLTKMSILGKGSMRDKAKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTL >In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000366888_chr6_163483182_+_269aa MEEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGKDEEKYIDVVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEE TLTKMSILGKGSMRDKAKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNALNLRNRQVICVTL |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000337019_chr6_163483182_+_924nt ATGGAGGAGAAGTACCTGCCCGAGCTGATGGCGGAGAAGGACTCCCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACCAAGAA ATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAAAGTACATCGATGTGGTGATTAATAAGAACATGAAGCTGGGACAGAAAGTG TTAATTCCCGTAAAACAGTTCCCTAAGTTCAACTTTGTGGGGAAACTTTTGGGTCCACGTGGCAATTCTCTGAAGCGTTTACAAGAAGAA ACCTTGACAAAAATGTCCATCCTTGGGAAAGGTTCCATGAGAGACAAGGCCAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTG CCTCTGTTTTTTGATGGGCTTTGTGAAATGACATTTCCCTATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGG AACAAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGATAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTC AAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATC TTTAAGAATATGAATGGGTCTTACTCTTTGCCCAGGCTGGAGTGCAGTGGCGCGATCATGGCTCGTTGCAACCTCGACCACCTGGGCTCA AGTGATCCTCCCACCTCAGCCTCTCAAGTAGCTGAGATTATAGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAAC ATTGGGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGCGCTACGGAGGAGAAAATGCCTTTATCAACATTAAGTACGTGGTCCCAACC >In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000366889_chr6_163483182_+_807nt ATGGAGGAGAAGTACCTGCCCGAGCTGATGGCGGAGAAGGACTCCCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACCAAGAA ATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAAAGTACATCGATGTGGTGATTAATAAGAACATGAAGCTGGGACAGAAAGTG TTAATTCCCGTAAAACAGTTCCCTAAGTTCAACTTTGTGGGGAAACTTTTGGGTCCACGTGGCAATTCTCTGAAGCGTTTACAAGAAGAA ACCTTGACAAAAATGTCCATCCTTGGGAAAGGTTCCATGAGAGACAAGGCCAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTG CCTCTGTTTTTTGATGGGCTTTGTGAAATGACATTTCCCTATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGG AACAAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGATAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTC AAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATC TTTAAGAATATGAATGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCCAGGAGACACTG >In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000366888_chr6_163483182_+_807nt ATGGAGGAGAAGTACCTGCCCGAGCTGATGGCGGAGAAGGACTCCCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACCAAGAA ATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAAAGTACATCGATGTGGTGATTAATAAGAACATGAAGCTGGGACAGAAAGTG TTAATTCCCGTAAAACAGTTCCCTAAGTTCAACTTTGTGGGGAAACTTTTGGGTCCACGTGGCAATTCTCTGAAGCGTTTACAAGAAGAA ACCTTGACAAAAATGTCCATCCTTGGGAAAGGTTCCATGAGAGACAAGGCCAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTG CCTCTGTTTTTTGATGGGCTTTGTGAAATGACATTTCCCTATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGG AACAAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGATAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTC AAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGGGCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATC TTTAAGAATATGAATGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCCAGGAGACACTG |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000337019_chr6_163483182_+_1838nt GAGTGCGCGGGGCGGCGCGCGGCGTGCAGGTCGCAGCTGTGGCTCGGGTGCTGGCAGGTGCTGGCGGGACTGGCGGGGATCGCCGTGGAC TGCCTCAGGGGCGCCGCAGCCCGCTCGGCCCGAGGGCCCGCCTAACCGCGCCGCCCGCGCCCGCTCCTCCTCGGCCCGCGCCCGGAGCGC GGGGGCCGCCGGCGCTGGGTACTCGGCGGCCACCGGGGATCGGGGCTGAGCGGTCGGTTCCCGCCCCCGTGCCGCCGCCGCCGCCTTCCG GCCGACCGCCCGGCTTGGCCGCTGCTGCCGCGTCTGGCCCCCGGGTCCCCGCCGCTGGGGGCGCGGGCGGGGTCGGGGGTTGCCGGGCGC CGCCCCCCGTGCGCCTGGAGTCCACATCCCGGGCCCGGCGGCCGGCGAGCATGGAGGAGAAGTACCTGCCCGAGCTGATGGCGGAGAAGG ACTCCCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACCAAGAAATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAA AGTACATCGATGTGGTGATTAATAAGAACATGAAGCTGGGACAGAAAGTGTTAATTCCCGTAAAACAGTTCCCTAAGTTCAACTTTGTGG GGAAACTTTTGGGTCCACGTGGCAATTCTCTGAAGCGTTTACAAGAAGAAACCTTGACAAAAATGTCCATCCTTGGGAAAGGTTCCATGA GAGACAAGGCCAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTGCCTCTGTTTTTTGATGGGCTTTGTGAAATGACATTTCCCT ATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGGAACAAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGA TAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGG GCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATCTTTAAGAATATGAATGGGTCTTACTCTTTGCCCAGGCTGG AGTGCAGTGGCGCGATCATGGCTCGTTGCAACCTCGACCACCTGGGCTCAAGTGATCCTCCCACCTCAGCCTCTCAAGTAGCTGAGATTA TAGTGAACTCCGGAGACGGCATTGACTACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGC GCTACGGAGGAGAAAATGCCTTTATCAACATTAAGTACGTGGTCCCAACCTACGAGTCTTGCTTGCTAAACTAACAGTGGCAGCAGCTGG GACTTGAAACCTCCCGTTGGTGTTGGGATCATCTGTCTCTGTTGCTTTTAGCATCTCATTCCTTGTGACTTCCACAGCTTTCTTTTCTAC AGCTGCTAAAATAGTGGCTTATGGGCCATTGGACTGTTAGCCCTATTGAGAGCAAGGCTTTCCAATACATAAATAGTGTCTGTTTCTTAG ATTACAATAGTGTACTGTGCTTATTTGTTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTT CAGTTGTATAGACAATAAACTATAATTTTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTT GTAAGGGAAGAGTTTATGCTGACTGCTTACTAGGTGTTTGTCATGGAAGAGAAGCATGGGTTCAGCAGTGCCTCTCTAGCAGCTGTGCGG >In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000366889_chr6_163483182_+_1722nt GAGTGCGCGGGGCGGCGCGCGGCGTGCAGGTCGCAGCTGTGGCTCGGGTGCTGGCAGGTGCTGGCGGGACTGGCGGGGATCGCCGTGGAC TGCCTCAGGGGCGCCGCAGCCCGCTCGGCCCGAGGGCCCGCCTAACCGCGCCGCCCGCGCCCGCTCCTCCTCGGCCCGCGCCCGGAGCGC GGGGGCCGCCGGCGCTGGGTACTCGGCGGCCACCGGGGATCGGGGCTGAGCGGTCGGTTCCCGCCCCCGTGCCGCCGCCGCCGCCTTCCG GCCGACCGCCCGGCTTGGCCGCTGCTGCCGCGTCTGGCCCCCGGGTCCCCGCCGCTGGGGGCGCGGGCGGGGTCGGGGGTTGCCGGGCGC CGCCCCCCGTGCGCCTGGAGTCCACATCCCGGGCCCGGCGGCCGGCGAGCATGGAGGAGAAGTACCTGCCCGAGCTGATGGCGGAGAAGG ACTCCCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACCAAGAAATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAA AGTACATCGATGTGGTGATTAATAAGAACATGAAGCTGGGACAGAAAGTGTTAATTCCCGTAAAACAGTTCCCTAAGTTCAACTTTGTGG GGAAACTTTTGGGTCCACGTGGCAATTCTCTGAAGCGTTTACAAGAAGAAACCTTGACAAAAATGTCCATCCTTGGGAAAGGTTCCATGA GAGACAAGGCCAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTGCCTCTGTTTTTTGATGGGCTTTGTGAAATGACATTTCCCT ATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGGAACAAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGA TAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGG GCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATCTTTAAGAATATGAATGTGAACTCCGGAGACGGCATTGACT ACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGCGCTACGGAGGAGAAAATGCCTTTATCA ACATTAAGTACGTGGTCCCAACCTACGAGTCTTGCTTGCTAAACTAACAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGG ATCATCTGTCTCTGTTGCTTTTAGCATCTCATTCCTTGTGACTTCCACAGCTTTCTTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCC ATTGGACTGTTAGCCCTATTGAGAGCAAGGCTTTCCAATACATAAATAGTGTCTGTTTCTTAGATTACAATAGTGTACTGTGCTTATTTG TTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAACTATAATT TTCATATGCAATTCAGCAATTGCTGTTCTGTGTGTGCCTGCCCTGGGGGTGATGTCAGAGGTTGTAAGGGAAGAGTTTATGCTGACTGCT TACTAGGTGTTTGTCATGGAAGAGAAGCATGGGTTCAGCAGTGCCTCTCTAGCAGCTGTGCGGAATAATGTGCTTTGACATTCAATAAAA >In-frame_KHDRBS3_ENST00000355849_chr8_136555013_+_PACRG_ENST00000366888_chr6_163483182_+_1541nt GAGTGCGCGGGGCGGCGCGCGGCGTGCAGGTCGCAGCTGTGGCTCGGGTGCTGGCAGGTGCTGGCGGGACTGGCGGGGATCGCCGTGGAC TGCCTCAGGGGCGCCGCAGCCCGCTCGGCCCGAGGGCCCGCCTAACCGCGCCGCCCGCGCCCGCTCCTCCTCGGCCCGCGCCCGGAGCGC GGGGGCCGCCGGCGCTGGGTACTCGGCGGCCACCGGGGATCGGGGCTGAGCGGTCGGTTCCCGCCCCCGTGCCGCCGCCGCCGCCTTCCG GCCGACCGCCCGGCTTGGCCGCTGCTGCCGCGTCTGGCCCCCGGGTCCCCGCCGCTGGGGGCGCGGGCGGGGTCGGGGGTTGCCGGGCGC CGCCCCCCGTGCGCCTGGAGTCCACATCCCGGGCCCGGCGGCCGGCGAGCATGGAGGAGAAGTACCTGCCCGAGCTGATGGCGGAGAAGG ACTCCCTGGACCCCTCCTTCACGCACGCCCTGCGCCTGGTGAACCAAGAAATAGAAAAGTTTCAAAAAGGAGAAGGCAAGGATGAAGAAA AGTACATCGATGTGGTGATTAATAAGAACATGAAGCTGGGACAGAAAGTGTTAATTCCCGTAAAACAGTTCCCTAAGTTCAACTTTGTGG GGAAACTTTTGGGTCCACGTGGCAATTCTCTGAAGCGTTTACAAGAAGAAACCTTGACAAAAATGTCCATCCTTGGGAAAGGTTCCATGA GAGACAAGGCCAAGGTAGAAATTGAGAAGCTGGATTACCATCATTATCTGCCTCTGTTTTTTGATGGGCTTTGTGAAATGACATTTCCCT ATGAGTTTTTTGCTCGGCAAGGAATCCACGACATGCTGGAACACGGTGGGAACAAGATCCTACCTGTCCTTCCACAGCTCATTATCCCGA TAAAAAATGCCTTGAACCTCCGAAACCGACAGGTCATCTGTGTCACTCTCAAGGTCCTCCAGCATCTGGTTGTGTCAGCTGAGATGGTGG GCAAGGCCTTGGTGCCTTATTACCGTCAAATCCTCCCTGTCCTGAACATCTTTAAGAATATGAATGTGAACTCCGGAGACGGCATTGACT ACAGCCAGCAGAAGAGGGAGAACATTGGGGACTTGATCCAGGAGACACTGGAGGCCTTCGAGCGCTACGGAGGAGAAAATGCCTTTATCA ACATTAAGTACGTGGTCCCAACCTACGAGTCTTGCTTGCTAAACTAACAGTGGCAGCAGCTGGGACTTGAAACCTCCCGTTGGTGTTGGG ATCATCTGTCTCTGTTGCTTTTAGCATCTCATTCCTTGTGACTTCCACAGCTTTCTTTTCTACAGCTGCTAAAATAGTGGCTTATGGGCC ATTGGACTGTTAGCCCTATTGAGAGCAAGGCTTTCCAATACATAAATAGTGTCTGTTTCTTAGATTACAATAGTGTACTGTGCTTATTTG TTCTAAGAGAAGAATTGCTTCTTTATACAGCTCCGACAGAAGCAGGAGTCCGAGTTAAACCTTCAGTTGTATAGACAATAAACTATAATT |
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FusionGenePPI for KHDRBS3_PACRG |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
KHDRBS3 | ZNF408, BAHD1, PSMF1, RBMX, CCDC33, LNX1, NUDT18, RBM7, HNRNPK, KHDRBS2, SIAH1, PRMT1, SGSM2, RPAP2, CACNA1A, RBBP6, SERPINB5, FBXO32, SNRPC, U2AF2, PTBP2, KHDRBS3, KHDRBS1, HNRNPC, FUS, NELFB, INPP5D, PRPF31, NCOA5, MARK4, DMRT3, YTHDC1, BMI1, FBXW11, ATXN2, HNRNPR, SYNCRIP, IFI16, PPP1R13B, G3BP1 | PACRG | HSP90AA1, CCT3, CCT4, CCT5, TCP1, CCT6A, CCT7, CCT2, TUBA1A, TUBB, HSPA4, PARK2, STUB1, DNAJA1, VCP, GPR37, APP, KLHL36, TP53, STIP1, CCDC40 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for KHDRBS3_PACRG |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for KHDRBS3_PACRG |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |