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Fusion gene ID: 18347 |
FusionGeneSummary for KCP_CKLF |
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Fusion gene information | Fusion gene name: KCP_CKLF | Fusion gene ID: 18347 | Hgene | Tgene | Gene symbol | KCP | CKLF | Gene ID | 375616 | 51192 |
Gene name | kielin/chordin-like protein | chemokine like factor | |
Synonyms | CRIM2|KCP1|NET67 | C32|CKLF1|CKLF2|CKLF3|CKLF4|HSPC224|UCK-1 | |
Cytomap | 7q32.1 | 16q21 | |
Type of gene | protein-coding | protein-coding | |
Description | kielin/chordin-like proteinCRIM-2KCP-1cysteine rich BMP regulator 2 (chordin-like)cysteine-rich BMP regulator 2cysteine-rich motor neuron 2 proteinkielinkielin/chordin-like protein 1 | chemokine-like factorchemokine-like factor 1chemokine-like factor 2chemokine-like factor 3chemokine-like factor 4transmembrane proteolipid | |
Modification date | 20180408 | 20180523 | |
UniProtAcc | Q9UBR5 | ||
Ensembl transtripts involved in fusion gene | ENST00000476647, | ENST00000264001, ENST00000362093, ENST00000351137, ENST00000345436, ENST00000417030, ENST00000563092, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 3 X 3 X 2=18 |
# samples | 1 | 3 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: KCP [Title/Abstract] AND CKLF [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | CKLF | GO:0008283 | cell proliferation | 11415443 |
Tgene | CKLF | GO:0030593 | neutrophil chemotaxis | 11415443 |
Tgene | CKLF | GO:0032940 | secretion by cell | 11415443 |
Tgene | CKLF | GO:0048246 | macrophage chemotaxis | 11415443 |
Tgene | CKLF | GO:0048247 | lymphocyte chemotaxis | 11415443 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BC068076 | KCP | chr7 | 128507727 | - | CKLF | chr16 | 66596067 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000476647 | ENST00000264001 | KCP | chr7 | 128507727 | - | CKLF | chr16 | 66596067 | + |
intron-intron | ENST00000476647 | ENST00000362093 | KCP | chr7 | 128507727 | - | CKLF | chr16 | 66596067 | + |
intron-intron | ENST00000476647 | ENST00000351137 | KCP | chr7 | 128507727 | - | CKLF | chr16 | 66596067 | + |
intron-intron | ENST00000476647 | ENST00000345436 | KCP | chr7 | 128507727 | - | CKLF | chr16 | 66596067 | + |
intron-intron | ENST00000476647 | ENST00000417030 | KCP | chr7 | 128507727 | - | CKLF | chr16 | 66596067 | + |
intron-intron | ENST00000476647 | ENST00000563092 | KCP | chr7 | 128507727 | - | CKLF | chr16 | 66596067 | + |
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FusionProtFeatures for KCP_CKLF |
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Hgene | Tgene |
KCP | CKLF |
Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. | May play an important role in inflammation andregeneration of skeletal muscle. Partly inhibited by interleukin10. {ECO:0000269|PubMed:11415443}. Isoform 1: has chemotactic response in monocytes,neutrophils and lymphocytes (PubMed:11415443). Binds CCR4(PubMed:16137713). {ECO:0000269|PubMed:11415443,ECO:0000269|PubMed:16137713}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for KCP_CKLF |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for KCP_CKLF |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for KCP_CKLF |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for KCP_CKLF |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | CKLF | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |