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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 18005

FusionGeneSummary for JAK1_ATF3

check button Fusion gene summary
Fusion gene informationFusion gene name: JAK1_ATF3
Fusion gene ID: 18005
HgeneTgene
Gene symbol

JAK1

ATF3

Gene ID

3716

467

Gene nameJanus kinase 1activating transcription factor 3
SynonymsJAK1A|JAK1B|JTK3-
Cytomap

1p31.3

1q32.3

Type of geneprotein-codingprotein-coding
Descriptiontyrosine-protein kinase JAK1cyclic AMP-dependent transcription factor ATF-3cAMP-dependent transcription factor ATF-3
Modification date2018052720180523
UniProtAcc

P23458

P18847

Ensembl transtripts involved in fusion geneENST00000342505, ENST00000465376, 
ENST00000366987, ENST00000341491, 
ENST00000366985, ENST00000492118, 
ENST00000336937, ENST00000366983, 
Fusion gene scores* DoF score6 X 4 X 5=1204 X 4 X 2=32
# samples 64
** MAII scorelog2(6/120*10)=-1
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(4/32*10)=0.321928094887362
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: JAK1 [Title/Abstract] AND ATF3 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneJAK1

GO:0038110

interleukin-2-mediated signaling pathway

11909529

HgeneJAK1

GO:0046677

response to antibiotic

16280321

TgeneATF3

GO:0000122

negative regulation of transcription by RNA polymerase II

8622660

TgeneATF3

GO:0045944

positive regulation of transcription by RNA polymerase II

16300731

TgeneATF3

GO:1990440

positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress

24939851


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BE719597JAK1chr1

65339137

-ATF3chr1

212791479

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000342505ENST00000366987JAK1chr1

65339137

-ATF3chr1

212791479

+
intron-3CDSENST00000342505ENST00000341491JAK1chr1

65339137

-ATF3chr1

212791479

+
intron-3CDSENST00000342505ENST00000366985JAK1chr1

65339137

-ATF3chr1

212791479

+
intron-intronENST00000342505ENST00000492118JAK1chr1

65339137

-ATF3chr1

212791479

+
intron-intronENST00000342505ENST00000336937JAK1chr1

65339137

-ATF3chr1

212791479

+
intron-intronENST00000342505ENST00000366983JAK1chr1

65339137

-ATF3chr1

212791479

+
intron-3CDSENST00000465376ENST00000366987JAK1chr1

65339137

-ATF3chr1

212791479

+
intron-3CDSENST00000465376ENST00000341491JAK1chr1

65339137

-ATF3chr1

212791479

+
intron-3CDSENST00000465376ENST00000366985JAK1chr1

65339137

-ATF3chr1

212791479

+
intron-intronENST00000465376ENST00000492118JAK1chr1

65339137

-ATF3chr1

212791479

+
intron-intronENST00000465376ENST00000336937JAK1chr1

65339137

-ATF3chr1

212791479

+
intron-intronENST00000465376ENST00000366983JAK1chr1

65339137

-ATF3chr1

212791479

+

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FusionProtFeatures for JAK1_ATF3


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
JAK1

P23458

ATF3

P18847

Tyrosine kinase of the non-receptor type, involved inthe IFN-alpha/beta/gamma signal pathway (PubMed:7615558). Kinasepartner for the interleukin (IL)-2 receptor (PubMed:11909529).{ECO:0000269|PubMed:11909529, ECO:0000269|PubMed:7615558}. This protein binds the cAMP response element (CRE)(consensus: 5'-GTGACGT[AC][AG]-3'), a sequence present in manyviral and cellular promoters. Represses transcription frompromoters with ATF sites. It may repress transcription bystabilizing the binding of inhibitory cofactors at the promoter.Isoform 2 activates transcription presumably by sequesteringinhibitory cofactors away from the promoters.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for JAK1_ATF3


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for JAK1_ATF3


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for JAK1_ATF3


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgeneJAK1P23458DB08877RuxolitinibTyrosine-protein kinase JAK1small moleculeapproved
HgeneJAK1P23458DB08895TofacitinibTyrosine-protein kinase JAK1small moleculeapproved|investigational

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RelatedDiseases for JAK1_ATF3


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneATF3C0027765nervous system disorder2CTD_human
TgeneATF3C0007131Non-Small Cell Lung Carcinoma1CTD_human
TgeneATF3C0011570Mental Depression1PSYGENET
TgeneATF3C0011581Depressive disorder1PSYGENET
TgeneATF3C0011853Diabetes Mellitus, Experimental1CTD_human
TgeneATF3C0011860Diabetes Mellitus, Non-Insulin-Dependent1CTD_human
TgeneATF3C0021400Influenza1CTD_human
TgeneATF3C0023893Liver Cirrhosis, Experimental1CTD_human
TgeneATF3C0023903Liver neoplasms1CTD_human
TgeneATF3C0031117Peripheral Neuropathy1CTD_human
TgeneATF3C0033578Prostatic Neoplasms1CTD_human
TgeneATF3C0740392Infarction, Middle Cerebral Artery1CTD_human
TgeneATF3C0848558Hypospadias1CTD_human
TgeneATF3C0878544Cardiomyopathies1CTD_human
TgeneATF3C0919267ovarian neoplasm1CTD_human