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Fusion gene ID: 17988 |
FusionGeneSummary for IVD_IVD |
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Fusion gene information | Fusion gene name: IVD_IVD | Fusion gene ID: 17988 | Hgene | Tgene | Gene symbol | IVD | IVD | Gene ID | 3712 | 3712 |
Gene name | isovaleryl-CoA dehydrogenase | isovaleryl-CoA dehydrogenase | |
Synonyms | ACAD2 | ACAD2 | |
Cytomap | 15q15.1 | 15q15.1 | |
Type of gene | protein-coding | protein-coding | |
Description | isovaleryl-CoA dehydrogenase, mitochondrialisovaleryl Coenzyme A dehydrogenase | isovaleryl-CoA dehydrogenase, mitochondrialisovaleryl Coenzyme A dehydrogenase | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P26440 | P26440 | |
Ensembl transtripts involved in fusion gene | ENST00000249760, ENST00000490194, ENST00000487418, ENST00000479013, | ENST00000249760, ENST00000490194, ENST00000487418, ENST00000479013, | |
Fusion gene scores | * DoF score | 4 X 5 X 2=40 | 3 X 3 X 3=27 |
# samples | 6 | 4 | |
** MAII score | log2(6/40*10)=0.584962500721156 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(4/27*10)=0.567040592723894 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: IVD [Title/Abstract] AND IVD [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | IVD | GO:0033539 | fatty acid beta-oxidation using acyl-CoA dehydrogenase | 3597357 |
Tgene | IVD | GO:0033539 | fatty acid beta-oxidation using acyl-CoA dehydrogenase | 3597357 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AA232469 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + | ||
ChiTaRS3.1 | BC037304 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000249760 | ENST00000249760 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000249760 | ENST00000490194 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000249760 | ENST00000487418 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000249760 | ENST00000479013 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3CDS | ENST00000490194 | ENST00000249760 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000490194 | ENST00000490194 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000490194 | ENST00000487418 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000490194 | ENST00000479013 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3CDS | ENST00000487418 | ENST00000249760 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000487418 | ENST00000490194 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000487418 | ENST00000487418 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000487418 | ENST00000479013 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3CDS | ENST00000479013 | ENST00000249760 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000479013 | ENST00000490194 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000479013 | ENST00000487418 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000479013 | ENST00000479013 | IVD | chr15 | 40703459 | - | IVD | chr15 | 40702909 | + |
intron-3UTR | ENST00000249760 | ENST00000249760 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-intron | ENST00000249760 | ENST00000490194 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-intron | ENST00000249760 | ENST00000487418 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-3UTR | ENST00000249760 | ENST00000479013 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-3UTR | ENST00000490194 | ENST00000249760 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-intron | ENST00000490194 | ENST00000490194 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-intron | ENST00000490194 | ENST00000487418 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-3UTR | ENST00000490194 | ENST00000479013 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-3UTR | ENST00000487418 | ENST00000249760 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-intron | ENST00000487418 | ENST00000490194 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-intron | ENST00000487418 | ENST00000487418 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-3UTR | ENST00000487418 | ENST00000479013 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-3UTR | ENST00000479013 | ENST00000249760 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-intron | ENST00000479013 | ENST00000490194 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-intron | ENST00000479013 | ENST00000487418 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
intron-3UTR | ENST00000479013 | ENST00000479013 | IVD | chr1 | 84545407 | + | IVD | chr15 | 40711638 | + |
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FusionProtFeatures for IVD_IVD |
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Hgene | Tgene |
IVD | IVD |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for IVD_IVD |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for IVD_IVD |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for IVD_IVD |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for IVD_IVD |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | IVD | C0268575 | Isovaleryl-CoA dehydrogenase deficiency | 5 | CTD_human;ORPHANET;UNIPROT |
Hgene | IVD | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Tgene | IVD | C0268575 | Isovaleryl-CoA dehydrogenase deficiency | 5 | CTD_human;ORPHANET;UNIPROT |
Tgene | IVD | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |