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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 17884

FusionGeneSummary for ITGB5_PARP14

check button Fusion gene summary
Fusion gene informationFusion gene name: ITGB5_PARP14
Fusion gene ID: 17884
HgeneTgene
Gene symbol

ITGB5

PARP14

Gene ID

3693

54625

Gene nameintegrin subunit beta 5poly(ADP-ribose) polymerase family member 14
Synonyms-ARTD8|BAL2|PARP-14|pART8
Cytomap

3q21.2

3q21.1

Type of geneprotein-codingprotein-coding
Descriptionintegrin beta-5testis secretory sperm-binding protein Li 217ppoly [ADP-ribose] polymerase 14ADP-ribosyltransferase diphtheria toxin-like 8B-aggressive lymphoma 2b aggressive lymphoma protein 2collaborator of STAT6
Modification date2018052320180519
UniProtAcc

P18084

Q460N5

Ensembl transtripts involved in fusion geneENST00000296181, ENST00000461306, 
ENST00000474629, ENST00000475640, 
Fusion gene scores* DoF score8 X 8 X 6=3845 X 6 X 2=60
# samples 96
** MAII scorelog2(9/384*10)=-2.09310940439148
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(6/60*10)=0
Context

PubMed: ITGB5 [Title/Abstract] AND PARP14 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgenePARP14

GO:0006471

protein ADP-ribosylation

27796300


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVBRCATCGA-AO-A03L-01AITGB5chr3

124487860

-PARP14chr3

122427037

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000296181ENST00000474629ITGB5chr3

124487860

-PARP14chr3

122427037

+
5CDS-intronENST00000296181ENST00000475640ITGB5chr3

124487860

-PARP14chr3

122427037

+
5UTR-3CDSENST00000461306ENST00000474629ITGB5chr3

124487860

-PARP14chr3

122427037

+
5UTR-intronENST00000461306ENST00000475640ITGB5chr3

124487860

-PARP14chr3

122427037

+

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FusionProtFeatures for ITGB5_PARP14


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
ITGB5

P18084

PARP14

Q460N5

Integrin alpha-V/beta-5 (ITGAV:ITGB5) is a receptor forfibronectin. It recognizes the sequence R-G-D in its ligand. (Microbial infection) Integrin ITGAV:ITGB5 acts as areceptor for adenovirus type C. {ECO:0000269|PubMed:20615244}. ADP-ribosyltransferase (PubMed:16061477,PubMed:27796300). By mono-ADP-ribosylating STAT1 at 'Glu-657' and'Glu-705' and thus decreasing STAT1 phosphorylation, negativelyregulates pro-inflammatory cytokines production in macrophages inresponse to IFNG stimulation (PubMed:27796300). Mono-ADP-ribosylates STAT6 (By similarity). Enhances STAT6-dependenttranscription (By similarity). In macrophages, positivelyregulates MRC1 expression in response to IL4 stimulation bypromoting STAT6 phosphorylation (PubMed:27796300). Mono-ADP-ribosylates PARP9 (PubMed:27796300).{ECO:0000250|UniProtKB:Q2EMV9, ECO:0000269|PubMed:16061477,ECO:0000269|PubMed:27796300}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for ITGB5_PARP14


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for ITGB5_PARP14


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
ITGB5ANXA5, PTK2, CYR61, PAK4, ITGB3BP, ITGA3, PPARD, MERTK, MYC, PDIA3, ALB, SNTA1, EWSR1, SRSF9, EPHA2, EHMT2, MTUS2, KRT40, KRTAP10-9, KRTAP10-8, NOTCH2NL, ITGA5, ATP1B3, KLK5, MFGE8, EDIL3, SPP1, ZBTB17, PLP1, ADAM9, VTN, ST8SIA4, ADAM21, ADAM33, PRG3, ST8SIA3, INSL5, LRRC4, ITGAVPARP14GPI, STAT6, FCER2, HDAC2, HDAC3, CUL2, IKBKG, RPA1, RPA2, RPA3, DTX3L, PARP9, GAN, PARP10


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for ITGB5_PARP14


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ITGB5_PARP14


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneITGB5C0040128Thyroid Diseases1CTD_human
HgeneITGB5C3495559Juvenile arthritis1CTD_human