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Fusion gene ID: 17626 |
FusionGeneSummary for IPO11_CENPJ |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: IPO11_CENPJ | Fusion gene ID: 17626 | Hgene | Tgene | Gene symbol | IPO11 | CENPJ | Gene ID | 51194 | 55835 |
| Gene name | importin 11 | centromere protein J | |
| Synonyms | RanBP11 | BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4 | |
| Cytomap | 5q12.1 | 13q12.12-q12.13 | |
| Type of gene | protein-coding | protein-coding | |
| Description | importin-11Ran binding protein 11imp11ran-binding protein 11 | centromere protein JLAG-3-associated proteinLYST-interacting protein 1LYST-interacting protein LIP1LYST-interacting protein LIP7centrosomal P4.1-associated protein | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q9UI26 | Q9HC77 | |
| Ensembl transtripts involved in fusion gene | ENST00000325324, ENST00000409296, ENST00000409534, ENST00000512177, | ENST00000381884, ENST00000545981, ENST00000493190, | |
| Fusion gene scores | * DoF score | 6 X 6 X 4=144 | 1 X 1 X 1=1 |
| # samples | 6 | 1 | |
| ** MAII score | log2(6/144*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: IPO11 [Title/Abstract] AND CENPJ [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | CENPJ | GO:0061511 | centriole elongation | 22020124 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | BRCA | TCGA-B6-A0I8-01A | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5UTR-3CDS | ENST00000325324 | ENST00000381884 | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
| 5UTR-3UTR | ENST00000325324 | ENST00000545981 | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
| 5UTR-5UTR | ENST00000325324 | ENST00000493190 | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
| intron-3CDS | ENST00000409296 | ENST00000381884 | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
| intron-3UTR | ENST00000409296 | ENST00000545981 | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
| intron-5UTR | ENST00000409296 | ENST00000493190 | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
| intron-3CDS | ENST00000409534 | ENST00000381884 | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
| intron-3UTR | ENST00000409534 | ENST00000545981 | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
| intron-5UTR | ENST00000409534 | ENST00000493190 | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
| intron-3CDS | ENST00000512177 | ENST00000381884 | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
| intron-3UTR | ENST00000512177 | ENST00000545981 | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
| intron-5UTR | ENST00000512177 | ENST00000493190 | IPO11 | chr5 | 61708756 | + | CENPJ | chr13 | 25459524 | - |
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FusionProtFeatures for IPO11_CENPJ |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| IPO11 | CENPJ |
| Functions in nuclear protein import as nuclear transportreceptor. Serves as receptor for nuclear localization signals(NLS) in cargo substrates. Is thought to mediate docking of theimportin/substrate complex to the nuclear pore complex (NPC)through binding to nucleoporin and the complex is subsequentlytranslocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ranbinds to the importin, the importin/substrate complex dissociatesand importin is re-exported from the nucleus to the cytoplasmwhere GTP hydrolysis releases Ran. The directionality of nuclearimport is thought to be conferred by an asymmetric distribution ofthe GTP- and GDP-bound forms of Ran between the cytoplasm andnucleus (By similarity). Mediates the nuclear import of UBE2E3,and of RPL12 (By similarity). {ECO:0000250,ECO:0000269|PubMed:11032817}. | Plays an important role in cell division and centrosomefunction by participating in centriole duplication(PubMed:17681131, PubMed:20531387). Inhibits microtubulenucleation from the centrosome. Involved in the regulation of slowprocessive growth of centriolar microtubules. Acts as microtubuleplus-end tracking protein that stabilizes centriolar microtubulesand inhibits microtubule polymerization and extension from thedistal ends of centrioles (PubMed:15047868, PubMed:27219064,PubMed:27306797). Required for centriole elongation and for STIL-mediated centriole amplification (PubMed:22020124). Required forthe recruitment of CEP295 to the proximal end of new-borncentrioles at the centriolar microtubule wall during early S phasein a PLK4-dependent manner (PubMed:27185865). May be involved inthe control of centriolar-microtubule growth by acting as aregulator of tubulin release (PubMed:27306797).{ECO:0000269|PubMed:15047868, ECO:0000269|PubMed:17681131,ECO:0000269|PubMed:20531387, ECO:0000269|PubMed:22020124,ECO:0000269|PubMed:27185865, ECO:0000269|PubMed:27219064,ECO:0000305|PubMed:27306797}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for IPO11_CENPJ |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for IPO11_CENPJ |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| IPO11 | TRAF2, PLCD4, C20orf24, RPL12, DDX5, KEAP1, RAN, UBE2E1, UBE2E3, UBE2E2, NXF1, SH3GL2, CFTR, PHB, EGFR, FBXO6, MOB1A, MOB1B, AARS, CACYBP, DR1, EIF4A3, HNRNPD, HNRNPH1, AGFG1, ARPC1B, CALU, HSF1, LPP, METTL1, TPD52L2, TTLL12, UBE3A, PDLIM5, PKM, PLIN3, PRDX2, RANGAP1, SRP9, TPRKB, EIF4A2, C1orf94, ADORA3, COMTD1, BSG, TNFSF13B, PNKD, LPAR6, P2RY12, PTGER3, ARL13B, SCN2B, XPO1, NTRK1, CEP128, SIGLECL1, IL13RA2, HTR2C, FZD10, CHRM4, TMEM206, OPRM1, CD70, SLC15A1, APLNR, STOM, AAR2, TRIM25 | CENPJ | LYST, TUBG1, EPB41, YWHAG, YWHAZ, ATN1, CIC, GFI1B, HDAC6, LATS2, SLMAP, MOV10, NXF1, RELA, CREBBP, PLEKHO2, CEP55, CEP131, NEDD1, PLK1, CEP120, CCP110, CEP85, CLASP1, CKAP2, MIB1, STIL, TTK, LZTS2, KIAA1671, CEP97, IQSEC1, KIF14, PCNT, KIF7, KIAA0586, ALMS1, CEP192, C2CD3, CDC7, CEP152, PCM1, ABCE1, ABLIM1, ADSL, AP3B1, AP3D1, ATXN10, BAIAP2L1, BTF3, AAR2, C5orf51, C6orf211, RABL6, CALM2, CAMSAP1, CAMSAP2, CCDC138, CCDC85C, CENPH, CEP170, CEP76, CKB, CNOT1, CNOT10, COMMD4, COPS3, CRTC3, CSPP1, DCP1B, DDX54, DVL3, ENO2, FAM21A, FBXO22, FERMT2, GPATCH1, GPX1, HAUS1, HAUS3, HAUS6, HAUS7, HAUS8, IBTK, IPO9, KIAA0753, LRRC49, MAPRE2, MB21D2, MLLT10, MOB4, MPHOSPH9, NAA10, OFD1, PALLD, PFDN4, PKN2, PSMC4, PTPN12, RAB18, RFC5, RIOK2, SDCCAG3, SEC16A, SEC23A, SEC23B, SEC24B, SMG7, SNX27, SSX2IP, TCHP, TNIP1, TNRC6A, TNRC6B, TP53BP2, TPGS1, TRIO, UNC45A, VCPIP1, WRAP73, XRN1, YWHAE, YWHAH, SPICE1, NINL, SASS6, NAB1, YWHAB, CLASP2, GEMIN5, PPHLN1, NABP2, KLC2, PRR3, DYNLRB1, PHLDB3, MRPL12, SH3RF2, TUBB3 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for IPO11_CENPJ |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for IPO11_CENPJ |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | IPO11 | C0001973 | Alcoholic Intoxication, Chronic | 1 | PSYGENET |
| Hgene | IPO11 | C0043094 | Weight Gain | 1 | CTD_human |
| Tgene | CENPJ | C1842109 | Microcephaly, Primary Autosomal Recessive, 6 | 1 | CTD_human;UNIPROT |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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