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Fusion gene ID: 17486 |
FusionGeneSummary for INO80_CYSTM1 |
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Fusion gene information | Fusion gene name: INO80_CYSTM1 | Fusion gene ID: 17486 | Hgene | Tgene | Gene symbol | INO80 | CYSTM1 | Gene ID | 54617 | 84418 |
Gene name | INO80 complex subunit | cysteine rich transmembrane module containing 1 | |
Synonyms | INO80A|INOC1|hINO80 | C5orf32|ORF1-FL49 | |
Cytomap | 15q15.1 | 5q31.3 | |
Type of gene | protein-coding | protein-coding | |
Description | DNA helicase INO80INO80 complex subunit AINO80 homologhomolog of yeast INO80putative DNA helicase INO80 complex homolog 1 | cysteine-rich and transmembrane domain-containing protein 1UPF0467 protein C5orf32putative nuclear protein ORF1-FL49 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q9ULG1 | Q9H1C7 | |
Ensembl transtripts involved in fusion gene | ENST00000361937, ENST00000401393, ENST00000561244, | ENST00000261811, ENST00000509789, | |
Fusion gene scores | * DoF score | 6 X 6 X 5=180 | 8 X 5 X 7=280 |
# samples | 6 | 8 | |
** MAII score | log2(6/180*10)=-1.58496250072116 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(8/280*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: INO80 [Title/Abstract] AND CYSTM1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | SARC | TCGA-WP-A9GB-01A | INO80 | chr15 | 41337103 | - | CYSTM1 | chr5 | 139661081 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000361937 | ENST00000261811 | INO80 | chr15 | 41337103 | - | CYSTM1 | chr5 | 139661081 | + |
5CDS-3UTR | ENST00000361937 | ENST00000509789 | INO80 | chr15 | 41337103 | - | CYSTM1 | chr5 | 139661081 | + |
5CDS-intron | ENST00000401393 | ENST00000261811 | INO80 | chr15 | 41337103 | - | CYSTM1 | chr5 | 139661081 | + |
5CDS-3UTR | ENST00000401393 | ENST00000509789 | INO80 | chr15 | 41337103 | - | CYSTM1 | chr5 | 139661081 | + |
intron-intron | ENST00000561244 | ENST00000261811 | INO80 | chr15 | 41337103 | - | CYSTM1 | chr5 | 139661081 | + |
intron-3UTR | ENST00000561244 | ENST00000509789 | INO80 | chr15 | 41337103 | - | CYSTM1 | chr5 | 139661081 | + |
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FusionProtFeatures for INO80_CYSTM1 |
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Hgene | Tgene |
INO80 | CYSTM1 |
ATPase component of the chromatin remodeling INO80complex which is involved in transcriptional regulation, DNAreplication and DNA repair (PubMed:16230350, PubMed:16298340,PubMed:17721549, PubMed:20855601, PubMed:20237820). Binds DNA(PubMed:16298340, PubMed:21303910). As part of the INO80 complex,remodels chromatin by shifting nucleosomes (PubMed:16230350,PubMed:21303910). Regulates transcription upon recruitment by YY1to YY1-activated genes, where it acts as an essential coactivator(PubMed:17721549). Involved in UV-damage excision DNA repair(PubMed:20855601). The contribution to DNA double-strand breakrepair appears to be largely indirect through transcriptionalregulation (PubMed:20687897). Involved in DNA replication(PubMed:20237820). Required for microtubule assembly duringmitosis thereby regulating chromosome segregation cycle(PubMed:20237820). {ECO:0000269|PubMed:16230350,ECO:0000269|PubMed:16298340, ECO:0000269|PubMed:17721549,ECO:0000269|PubMed:20237820, ECO:0000269|PubMed:20687897,ECO:0000269|PubMed:20855601, ECO:0000269|PubMed:21303910}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for INO80_CYSTM1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for INO80_CYSTM1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
INO80 | ACTN4, ACTR5, ACTB, RUVBL1, RUVBL2, INO80C, INO80B, YY1, ACTL6A, ACTR8, MCRS1, UCHL5, INO80D, INO80E, NFRKB, TFPT, TUBA1B, TUBA1A, DDX24, MBD3, POLR1A, DDB1, BAP1, HIST2H2AC, CA10, SMARCA5, MUS81, MLH1, POU5F1, BCL7C, BCL7A | CYSTM1 | UQCR10, RAB11A, IER3IP1, NDUFB11, UQCRQ, TMX1, GNAI2, SLC16A1, GLP1R, MFSD4, SLC39A5 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for INO80_CYSTM1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for INO80_CYSTM1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | CYSTM1 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |