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Fusion gene ID: 17281 |
FusionGeneSummary for IGKC_TTC19 |
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Fusion gene information | Fusion gene name: IGKC_TTC19 | Fusion gene ID: 17281 | Hgene | Tgene | Gene symbol | IGKC | TTC19 | Gene ID | 3514 | 54902 |
Gene name | immunoglobulin kappa constant | tetratricopeptide repeat domain 19 | |
Synonyms | HCAK1|IGKCD|Km | 2010204O13Rik|MC3DN2 | |
Cytomap | 2p11.2 | 17p12 | |
Type of gene | other | protein-coding | |
Description | immunoglobulin kappa (invariant region)immunoglobulin kappa constant regionimmunoglobulin kappa light chain (VJ) | tetratricopeptide repeat protein 19, mitochondrialTPR repeat protein 19 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | P01834 | Q6DKK2 | |
Ensembl transtripts involved in fusion gene | ENST00000390237, | ENST00000261647, ENST00000486880, ENST00000497842, | |
Fusion gene scores | * DoF score | 17 X 22 X 3=1122 | 4 X 4 X 2=32 |
# samples | 29 | 5 | |
** MAII score | log2(29/1122*10)=-1.95194787059386 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/32*10)=0.643856189774725 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: IGKC [Title/Abstract] AND TTC19 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF512049 | IGKC | chr2 | 89156747 | + | TTC19 | chr17 | 15931273 | - | ||
ChiTaRS3.1 | AW291782 | IGKC | chr2 | 89156747 | + | TTC19 | chr17 | 15931273 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3UTR | ENST00000390237 | ENST00000261647 | IGKC | chr2 | 89156747 | + | TTC19 | chr17 | 15931273 | - |
intron-3UTR | ENST00000390237 | ENST00000486880 | IGKC | chr2 | 89156747 | + | TTC19 | chr17 | 15931273 | - |
intron-intron | ENST00000390237 | ENST00000497842 | IGKC | chr2 | 89156747 | + | TTC19 | chr17 | 15931273 | - |
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FusionProtFeatures for IGKC_TTC19 |
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Hgene | Tgene |
IGKC | TTC19 |
Constant region of immunoglobulin heavy chains.Immunoglobulins, also known as antibodies, are membrane-bound orsecreted glycoproteins produced by B lymphocytes. In therecognition phase of humoral immunity, the membrane-boundimmunoglobulins serve as receptors which, upon binding of aspecific antigen, trigger the clonal expansion and differentiationof B lymphocytes into immunoglobulins-secreting plasma cells.Secreted immunoglobulins mediate the effector phase of humoralimmunity, which results in the elimination of bound antigens(PubMed:22158414, PubMed:20176268). The antigen binding site isformed by the variable domain of one heavy chain, together withthat of its associated light chain. Thus, each immunoglobulin hastwo antigen binding sites with remarkable affinity for aparticular antigen. The variable domains are assembled by aprocess called V-(D)-J rearrangement and can then be subjected tosomatic hypermutations which, after exposure to antigen andselection, allow affinity maturation for a particular antigen(PubMed:17576170, PubMed:20176268). {ECO:0000303|PubMed:17576170,ECO:0000303|PubMed:20176268, ECO:0000303|PubMed:22158414}. | Required for the preservation of the structural andfunctional integrity of mitochondrial respiratory complex III byallowing the physiological turnover of the Rieske protein UQCRFS1(PubMed:21278747, PubMed:28673544). Involved in the clearance ofUQCRFS1 N-terminal fragments, which are produced uponincorporation of UQCRFS1 into the complex III and whose presenceis detrimental for its catalytic activity (PubMed:28673544).{ECO:0000269|PubMed:21278747, ECO:0000269|PubMed:28673544}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for IGKC_TTC19 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for IGKC_TTC19 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for IGKC_TTC19 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for IGKC_TTC19 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | IGKC | C0013374 | Dysgammaglobulinemia | 1 | CTD_human |
Hgene | IGKC | C0027121 | Myositis | 1 | CTD_human |
Hgene | IGKC | C3279824 | Kappa-Chain Deficiency | 1 | ORPHANET;UNIPROT |
Tgene | TTC19 | C0021359 | Infertility | 1 | CTD_human |
Tgene | TTC19 | C0027765 | nervous system disorder | 1 | CTD_human |
Tgene | TTC19 | C0524851 | Neurodegenerative Disorders | 1 | CTD_human;HPO |
Tgene | TTC19 | C0751830 | Gait Disorders, Neurologic | 1 | CTD_human |