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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 17162

FusionGeneSummary for IGF2BP3_SSR2

check button Fusion gene summary
Fusion gene informationFusion gene name: IGF2BP3_SSR2
Fusion gene ID: 17162
HgeneTgene
Gene symbol

IGF2BP3

SSR2

Gene ID

10643

6746

Gene nameinsulin like growth factor 2 mRNA binding protein 3signal sequence receptor subunit 2
SynonymsCT98|IMP-3|IMP3|KOC|KOC1|VICKZ3HSD25|TLAP|TRAP-BETA|TRAPB
Cytomap

7p15.3

1q22

Type of geneprotein-codingprotein-coding
Descriptioninsulin-like growth factor 2 mRNA-binding protein 3IGF-II mRNA-binding protein 3IGF2 mRNA-binding protein 3KH domain containing protein overexpressed in cancerVICKZ family member 3cancer/testis antigen 98translocon-associated protein subunit betaSSR-betasignal sequence receptor subunit betasignal sequence receptor, beta (translocon-associated protein beta)translocon-associated protein beta
Modification date2018051920180523
UniProtAcc

O00425

P43308

Ensembl transtripts involved in fusion geneENST00000258729, ENST00000491719, 
ENST00000295702, ENST00000529008, 
ENST00000496742, ENST00000480567, 
Fusion gene scores* DoF score5 X 5 X 4=1006 X 7 X 4=168
# samples 57
** MAII scorelog2(5/100*10)=-1
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(7/168*10)=-1.26303440583379
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: IGF2BP3 [Title/Abstract] AND SSR2 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BF326256IGF2BP3chr7

23436312

-SSR2chr1

155979325

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3UTRENST00000258729ENST00000295702IGF2BP3chr7

23436312

-SSR2chr1

155979325

+
intron-3UTRENST00000258729ENST00000529008IGF2BP3chr7

23436312

-SSR2chr1

155979325

+
intron-3UTRENST00000258729ENST00000496742IGF2BP3chr7

23436312

-SSR2chr1

155979325

+
intron-3UTRENST00000258729ENST00000480567IGF2BP3chr7

23436312

-SSR2chr1

155979325

+
intron-3UTRENST00000491719ENST00000295702IGF2BP3chr7

23436312

-SSR2chr1

155979325

+
intron-3UTRENST00000491719ENST00000529008IGF2BP3chr7

23436312

-SSR2chr1

155979325

+
intron-3UTRENST00000491719ENST00000496742IGF2BP3chr7

23436312

-SSR2chr1

155979325

+
intron-3UTRENST00000491719ENST00000480567IGF2BP3chr7

23436312

-SSR2chr1

155979325

+

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FusionProtFeatures for IGF2BP3_SSR2


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
IGF2BP3

O00425

SSR2

P43308

RNA-binding factor that may recruit target transcriptsto cytoplasmic protein-RNA complexes (mRNPs). This transcript'caging' into mRNPs allows mRNA transport and transient storage.It also modulates the rate and location at which targettranscripts encounter the translational apparatus and shields themfrom endonuclease attacks or microRNA-mediated degradation. Bindsto the 3'-UTR of CD44 mRNA and stabilizes it, hence promotes celladhesion and invadopodia formation in cancer cells. Binds to beta-actin/ACTB and MYC transcripts. Binds to the 5'-UTR of theinsulin-like growth factor 2 (IGF2) mRNAs.{ECO:0000269|PubMed:16541107, ECO:0000269|PubMed:23640942}. TRAP proteins are part of a complex whose function is tobind calcium to the ER membrane and thereby regulate the retentionof ER resident proteins.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for IGF2BP3_SSR2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for IGF2BP3_SSR2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for IGF2BP3_SSR2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for IGF2BP3_SSR2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneIGF2BP3C0023893Liver Cirrhosis, Experimental1CTD_human
HgeneIGF2BP3C0031149Peritoneal Neoplasms1CTD_human
HgeneIGF2BP3C0345967Malignant mesothelioma1CTD_human
TgeneSSR2C0033578Prostatic Neoplasms1CTD_human