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Fusion gene ID: 1710 |
FusionGeneSummary for ANKHD1_PAIP2 |
Fusion gene summary |
Fusion gene information | Fusion gene name: ANKHD1_PAIP2 | Fusion gene ID: 1710 | Hgene | Tgene | Gene symbol | ANKHD1 | PAIP2 | Gene ID | 54882 | 51247 |
Gene name | ankyrin repeat and KH domain containing 1 | poly(A) binding protein interacting protein 2 | |
Synonyms | MASK|MASK1|PP2500|VBARP | PAIP-2|PAIP2A | |
Cytomap | 5q31.3 | 5q31.2 | |
Type of gene | protein-coding | protein-coding | |
Description | ankyrin repeat and KH domain-containing protein 1HIV-1 Vpr-binding ankyrin repeat proteinmultiple ankyrin repeats, single KH-domain homolog | polyadenylate-binding protein-interacting protein 2PABC1-interacting protein 2PABP-interacting protein 2polyA-binding protein-interacting protein 2 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q8IWZ3 | Q9BPZ3 | |
Ensembl transtripts involved in fusion gene | ENST00000360839, ENST00000297183, ENST00000394723, ENST00000394722, ENST00000462121, ENST00000544120, | ENST00000265192, ENST00000511381, ENST00000511706, ENST00000394795, ENST00000510080, | |
Fusion gene scores | * DoF score | 18 X 11 X 5=990 | 7 X 5 X 5=175 |
# samples | 12 | 7 | |
** MAII score | log2(12/990*10)=-3.04439411935845 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(7/175*10)=-1.32192809488736 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: ANKHD1 [Title/Abstract] AND PAIP2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Tumor suppressor gene involved fusion gene, in-frame but not retained their domain. Tumor suppressor gene involved fusion gene, retained protein feature but frameshift. DDR (DNA damage repair) gene involved fusion gene, in-frame but not retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PAIP2 | GO:0045947 | negative regulation of translational initiation | 11172725 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | STAD | TCGA-BR-4357-01A | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000360839 | ENST00000265192 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
5CDS-3UTR | ENST00000360839 | ENST00000511381 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
5CDS-3UTR | ENST00000360839 | ENST00000511706 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
5CDS-3UTR | ENST00000360839 | ENST00000394795 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
5CDS-3UTR | ENST00000360839 | ENST00000510080 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
In-frame | ENST00000297183 | ENST00000265192 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
5CDS-3UTR | ENST00000297183 | ENST00000511381 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
5CDS-3UTR | ENST00000297183 | ENST00000511706 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
5CDS-3UTR | ENST00000297183 | ENST00000394795 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
5CDS-3UTR | ENST00000297183 | ENST00000510080 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3CDS | ENST00000394723 | ENST00000265192 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000394723 | ENST00000511381 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000394723 | ENST00000511706 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000394723 | ENST00000394795 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000394723 | ENST00000510080 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3CDS | ENST00000394722 | ENST00000265192 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000394722 | ENST00000511381 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000394722 | ENST00000511706 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000394722 | ENST00000394795 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000394722 | ENST00000510080 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3CDS | ENST00000462121 | ENST00000265192 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000462121 | ENST00000511381 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000462121 | ENST00000511706 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000462121 | ENST00000394795 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000462121 | ENST00000510080 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3CDS | ENST00000544120 | ENST00000265192 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000544120 | ENST00000511381 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000544120 | ENST00000511706 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000544120 | ENST00000394795 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
intron-3UTR | ENST00000544120 | ENST00000510080 | ANKHD1 | chr5 | 139865317 | + | PAIP2 | chr5 | 138704422 | + |
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FusionProtFeatures for ANKHD1_PAIP2 |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
ANKHD1 | PAIP2 |
Acts as a repressor in the regulation of translationinitiation of poly(A)-containing mRNAs. Its inhibitory activity ontranslation is mediated via its action on PABPC1. Displaces theinteraction of PABPC1 with poly(A) RNA and competes with PAIP1 forbinding to PABPC1. Its association with PABPC1 results indisruption of the cytoplasmic poly(A) RNP structure organization.{ECO:0000269|PubMed:11172725}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 6_94 | 714 | 2618 | Compositional bias | Note=Gly-rich |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 6_94 | 714 | 2543 | Compositional bias | Note=Gly-rich |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 204_233 | 714 | 2618 | Repeat | Note=ANK 1 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 237_266 | 714 | 2618 | Repeat | Note=ANK 2 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 271_300 | 714 | 2618 | Repeat | Note=ANK 3 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 304_333 | 714 | 2618 | Repeat | Note=ANK 4 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 337_366 | 714 | 2618 | Repeat | Note=ANK 5 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 371_400 | 714 | 2618 | Repeat | Note=ANK 6 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 404_433 | 714 | 2618 | Repeat | Note=ANK 7 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 437_466 | 714 | 2618 | Repeat | Note=ANK 8 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 470_499 | 714 | 2618 | Repeat | Note=ANK 9 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 504_533 | 714 | 2618 | Repeat | Note=ANK 10 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 534_563 | 714 | 2618 | Repeat | Note=ANK 11 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 567_596 | 714 | 2618 | Repeat | Note=ANK 12 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 600_629 | 714 | 2618 | Repeat | Note=ANK 13 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 634_663 | 714 | 2618 | Repeat | Note=ANK 14 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 667_696 | 714 | 2618 | Repeat | Note=ANK 15 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 204_233 | 714 | 2543 | Repeat | Note=ANK 1 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 237_266 | 714 | 2543 | Repeat | Note=ANK 2 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 271_300 | 714 | 2543 | Repeat | Note=ANK 3 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 304_333 | 714 | 2543 | Repeat | Note=ANK 4 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 337_366 | 714 | 2543 | Repeat | Note=ANK 5 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 371_400 | 714 | 2543 | Repeat | Note=ANK 6 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 404_433 | 714 | 2543 | Repeat | Note=ANK 7 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 437_466 | 714 | 2543 | Repeat | Note=ANK 8 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 470_499 | 714 | 2543 | Repeat | Note=ANK 9 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 504_533 | 714 | 2543 | Repeat | Note=ANK 10 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 534_563 | 714 | 2543 | Repeat | Note=ANK 11 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 567_596 | 714 | 2543 | Repeat | Note=ANK 12 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 600_629 | 714 | 2543 | Repeat | Note=ANK 13 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 634_663 | 714 | 2543 | Repeat | Note=ANK 14 |
Hgene | ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 667_696 | 714 | 2543 | Repeat | Note=ANK 15 |
Tgene | >PAIP2 | chr5:139865317 | chr5:138704422 | ENST00000265192 | + | 2 | 4 | 105_120 | 106 | 128 | Region | Note=PABPC1-interacting motif-2 (PAM2) |
Tgene | >PAIP2 | chr5:139865317 | chr5:138704422 | ENST00000394795 | + | 2 | 4 | 105_120 | 106 | 128 | Region | Note=PABPC1-interacting motif-2 (PAM2) |
Tgene | >PAIP2 | chr5:139865317 | chr5:138704422 | ENST00000510080 | + | 2 | 4 | 105_120 | 106 | 128 | Region | Note=PABPC1-interacting motif-2 (PAM2) |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1415_1485 | 714 | 2618 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 775_852 | 714 | 2618 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1415_1485 | 714 | 2543 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 775_852 | 714 | 2543 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1415_1485 | -16 | 617 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 775_852 | -16 | 617 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1415_1485 | -38 | 628 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 775_852 | -38 | 628 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1977_2100 | 714 | 2618 | Compositional bias | Note=Ser-rich |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 2291_2299 | 714 | 2618 | Compositional bias | Note=Poly-Ser |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1977_2100 | 714 | 2543 | Compositional bias | Note=Ser-rich |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 2291_2299 | 714 | 2543 | Compositional bias | Note=Poly-Ser |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1977_2100 | -16 | 617 | Compositional bias | Note=Ser-rich |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 2291_2299 | -16 | 617 | Compositional bias | Note=Poly-Ser |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 6_94 | -16 | 617 | Compositional bias | Note=Gly-rich |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1977_2100 | -38 | 628 | Compositional bias | Note=Ser-rich |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 2291_2299 | -38 | 628 | Compositional bias | Note=Poly-Ser |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 6_94 | -38 | 628 | Compositional bias | Note=Gly-rich |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1695_1759 | 714 | 2618 | Domain | KH |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1695_1759 | 714 | 2543 | Domain | KH |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1695_1759 | -16 | 617 | Domain | KH |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1695_1759 | -38 | 628 | Domain | KH |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1054_1083 | 714 | 2618 | Repeat | Note=ANK 16 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1087_1116 | 714 | 2618 | Repeat | Note=ANK 17 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1121_1150 | 714 | 2618 | Repeat | Note=ANK 18 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1154_1183 | 714 | 2618 | Repeat | Note=ANK 19 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1189_1218 | 714 | 2618 | Repeat | Note=ANK 20 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1223_1252 | 714 | 2618 | Repeat | Note=ANK 21 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1256_1285 | 714 | 2618 | Repeat | Note=ANK 22 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1291_1320 | 714 | 2618 | Repeat | Note=ANK 23 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1324_1353 | 714 | 2618 | Repeat | Note=ANK 24 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000297183 | + | 13 | 36 | 1357_1386 | 714 | 2618 | Repeat | Note=ANK 25 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1054_1083 | 714 | 2543 | Repeat | Note=ANK 16 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1087_1116 | 714 | 2543 | Repeat | Note=ANK 17 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1121_1150 | 714 | 2543 | Repeat | Note=ANK 18 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1154_1183 | 714 | 2543 | Repeat | Note=ANK 19 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1189_1218 | 714 | 2543 | Repeat | Note=ANK 20 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1223_1252 | 714 | 2543 | Repeat | Note=ANK 21 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1256_1285 | 714 | 2543 | Repeat | Note=ANK 22 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1291_1320 | 714 | 2543 | Repeat | Note=ANK 23 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1324_1353 | 714 | 2543 | Repeat | Note=ANK 24 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000360839 | + | 13 | 34 | 1357_1386 | 714 | 2543 | Repeat | Note=ANK 25 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1054_1083 | -16 | 617 | Repeat | Note=ANK 16 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1087_1116 | -16 | 617 | Repeat | Note=ANK 17 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1121_1150 | -16 | 617 | Repeat | Note=ANK 18 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1154_1183 | -16 | 617 | Repeat | Note=ANK 19 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1189_1218 | -16 | 617 | Repeat | Note=ANK 20 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1223_1252 | -16 | 617 | Repeat | Note=ANK 21 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1256_1285 | -16 | 617 | Repeat | Note=ANK 22 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1291_1320 | -16 | 617 | Repeat | Note=ANK 23 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1324_1353 | -16 | 617 | Repeat | Note=ANK 24 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 1357_1386 | -16 | 617 | Repeat | Note=ANK 25 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 204_233 | -16 | 617 | Repeat | Note=ANK 1 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 237_266 | -16 | 617 | Repeat | Note=ANK 2 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 271_300 | -16 | 617 | Repeat | Note=ANK 3 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 304_333 | -16 | 617 | Repeat | Note=ANK 4 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 337_366 | -16 | 617 | Repeat | Note=ANK 5 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 371_400 | -16 | 617 | Repeat | Note=ANK 6 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 404_433 | -16 | 617 | Repeat | Note=ANK 7 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 437_466 | -16 | 617 | Repeat | Note=ANK 8 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 470_499 | -16 | 617 | Repeat | Note=ANK 9 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 504_533 | -16 | 617 | Repeat | Note=ANK 10 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 534_563 | -16 | 617 | Repeat | Note=ANK 11 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 567_596 | -16 | 617 | Repeat | Note=ANK 12 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 600_629 | -16 | 617 | Repeat | Note=ANK 13 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 634_663 | -16 | 617 | Repeat | Note=ANK 14 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394722 | + | 1 | 11 | 667_696 | -16 | 617 | Repeat | Note=ANK 15 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1054_1083 | -38 | 628 | Repeat | Note=ANK 16 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1087_1116 | -38 | 628 | Repeat | Note=ANK 17 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1121_1150 | -38 | 628 | Repeat | Note=ANK 18 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1154_1183 | -38 | 628 | Repeat | Note=ANK 19 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1189_1218 | -38 | 628 | Repeat | Note=ANK 20 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1223_1252 | -38 | 628 | Repeat | Note=ANK 21 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1256_1285 | -38 | 628 | Repeat | Note=ANK 22 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1291_1320 | -38 | 628 | Repeat | Note=ANK 23 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1324_1353 | -38 | 628 | Repeat | Note=ANK 24 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 1357_1386 | -38 | 628 | Repeat | Note=ANK 25 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 204_233 | -38 | 628 | Repeat | Note=ANK 1 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 237_266 | -38 | 628 | Repeat | Note=ANK 2 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 271_300 | -38 | 628 | Repeat | Note=ANK 3 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 304_333 | -38 | 628 | Repeat | Note=ANK 4 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 337_366 | -38 | 628 | Repeat | Note=ANK 5 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 371_400 | -38 | 628 | Repeat | Note=ANK 6 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 404_433 | -38 | 628 | Repeat | Note=ANK 7 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 437_466 | -38 | 628 | Repeat | Note=ANK 8 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 470_499 | -38 | 628 | Repeat | Note=ANK 9 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 504_533 | -38 | 628 | Repeat | Note=ANK 10 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 534_563 | -38 | 628 | Repeat | Note=ANK 11 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 567_596 | -38 | 628 | Repeat | Note=ANK 12 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 600_629 | -38 | 628 | Repeat | Note=ANK 13 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 634_663 | -38 | 628 | Repeat | Note=ANK 14 |
Hgene | >ANKHD1 | chr5:139865317 | chr5:138704422 | ENST00000394723 | + | 1 | 11 | 667_696 | -38 | 628 | Repeat | Note=ANK 15 |
Tgene | PAIP2 | chr5:139865317 | chr5:138704422 | ENST00000265192 | + | 2 | 4 | 33_72 | 106 | 128 | Compositional bias | Note=Glu-rich |
Tgene | PAIP2 | chr5:139865317 | chr5:138704422 | ENST00000394795 | + | 2 | 4 | 33_72 | 106 | 128 | Compositional bias | Note=Glu-rich |
Tgene | PAIP2 | chr5:139865317 | chr5:138704422 | ENST00000510080 | + | 2 | 4 | 33_72 | 106 | 128 | Compositional bias | Note=Glu-rich |
Tgene | PAIP2 | chr5:139865317 | chr5:138704422 | ENST00000265192 | + | 2 | 4 | 22_75 | 106 | 128 | Region | Note=PABPC1-interacting motif-1 (PAM1) |
Tgene | PAIP2 | chr5:139865317 | chr5:138704422 | ENST00000394795 | + | 2 | 4 | 22_75 | 106 | 128 | Region | Note=PABPC1-interacting motif-1 (PAM1) |
Tgene | PAIP2 | chr5:139865317 | chr5:138704422 | ENST00000510080 | + | 2 | 4 | 22_75 | 106 | 128 | Region | Note=PABPC1-interacting motif-1 (PAM1) |
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FusionGeneSequence for ANKHD1_PAIP2 |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_ANKHD1_ENST00000360839_chr5_139865317_+_PAIP2_ENST00000265192_chr5_138704422_+_736aa MLTDSGGGGTSFEEDLDSVAPRSAPAGASEPPPPGGVGLGIRTVRLFGEAGPASGVGSSGGGGSGSGTGGGDAALDFKLAAAVLRTGGGG GASGSDEDEVSEVESFILDQEDLDNPVLKTTSEIFLSSTAEGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVS CALDEAAAALTRMKAENSHNAGQVDTRSLAEACSDGDVNAVRKLLDEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGNK GDITPLMAASSGGYLDIVKLLLLHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDH GAGINTHSNEFKESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGH VELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLM EASQEGHLELVKYLLASGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRA TANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPTTDVSQLPPPSQDQSQVKSNLN >In-frame_ANKHD1_ENST00000297183_chr5_139865317_+_PAIP2_ENST00000265192_chr5_138704422_+_736aa MLTDSGGGGTSFEEDLDSVAPRSAPAGASEPPPPGGVGLGIRTVRLFGEAGPASGVGSSGGGGSGSGTGGGDAALDFKLAAAVLRTGGGG GASGSDEDEVSEVESFILDQEDLDNPVLKTTSEIFLSSTAEGADLRTVDPETQARLEALLEAAGIGKLSTADGKAFADPEVLRRLTSSVS CALDEAAAALTRMKAENSHNAGQVDTRSLAEACSDGDVNAVRKLLDEGRSVNEHTEEGESLLCLACSAGYYELAQVLLAMHANVEDRGNK GDITPLMAASSGGYLDIVKLLLLHDADVNSQSATGNTALTYACAGGFVDIVKVLLNEGANIEDHNENGHTPLMEAASAGHVEVARVLLDH GAGINTHSNEFKESALTLACYKGHLDMVRFLLEAGADQEHKTDEMHTALMEACMDGHVEVARLLLDSGAQVNMPADSFESPLTLAACGGH VELAALLIERGANLEEVNDEGYTPLMEAAREGHEEMVALLLAQGANINAQTEETQETALTLACCGGFSEVADFLIKAGADIELGCSTPLM EASQEGHLELVKYLLASGANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRA TANNDHTVVSLACAGGHLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPTTDVSQLPPPSQDQSQVKSNLN |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_ANKHD1_ENST00000360839_chr5_139865317_+_PAIP2_ENST00000265192_chr5_138704422_+_2208nt ATGCTGACTGATAGCGGAGGCGGCGGCACCTCCTTTGAGGAGGACCTGGACTCTGTGGCTCCGCGATCCGCCCCAGCTGGGGCCTCGGAG CCGCCTCCGCCGGGAGGGGTCGGTCTGGGGATCCGCACCGTGAGGCTCTTTGGGGAGGCCGGGCCAGCGTCGGGAGTCGGCAGCAGCGGC GGCGGCGGCAGCGGCAGCGGTACGGGCGGAGGGGACGCGGCGCTGGATTTCAAGTTGGCGGCTGCCGTGCTGAGGACCGGGGGTGGAGGT GGTGCCTCTGGCAGTGACGAGGACGAAGTGTCCGAGGTTGAATCATTTATTTTGGACCAAGAAGATCTGGATAACCCAGTGCTTAAAACA ACATCAGAGATATTCTTATCAAGTACTGCAGAAGGAGCAGACTTACGCACTGTGGATCCAGAGACACAGGCACGACTAGAAGCATTGCTA GAAGCAGCAGGAATTGGCAAATTGTCAACTGCTGATGGTAAAGCTTTTGCAGATCCTGAGGTACTCCGGAGACTGACATCCTCAGTTAGT TGTGCACTGGATGAAGCTGCTGCTGCACTGACACGGATGAAAGCAGAAAACAGCCACAATGCAGGACAAGTGGACACTCGCAGTCTAGCA GAAGCTTGTTCAGATGGGGATGTTAATGCTGTTCGTAAATTGCTAGATGAAGGCAGAAGTGTAAATGAACATACAGAAGAAGGAGAAAGC CTGCTGTGTTTGGCTTGTTCAGCAGGGTATTATGAATTAGCACAAGTATTGCTTGCTATGCATGCTAATGTTGAAGATCGAGGGAATAAA GGAGACATAACTCCCCTGATGGCAGCTTCCAGTGGAGGTTACTTAGATATTGTGAAATTATTACTTCTTCATGATGCTGATGTCAACTCC CAGTCTGCAACAGGAAACACTGCGCTAACTTATGCATGTGCTGGAGGATTTGTTGACATTGTTAAAGTGCTCCTTAATGAAGGTGCAAAT ATAGAAGATCATAATGAAAATGGACATACTCCCTTAATGGAAGCAGCCAGTGCAGGTCATGTGGAAGTTGCAAGAGTTCTTTTAGATCAT GGTGCAGGCATCAACACTCATTCTAATGAATTCAAAGAAAGTGCTCTAACACTTGCTTGCTACAAAGGCCATTTGGATATGGTTCGCTTT CTACTTGAAGCTGGTGCAGATCAAGAGCACAAAACAGATGAGATGCACACTGCCTTAATGGAGGCCTGCATGGATGGACATGTAGAGGTG GCACGTTTGCTTTTGGATAGTGGTGCTCAAGTGAACATGCCTGCAGATTCATTTGAATCTCCATTGACGCTAGCTGCCTGTGGAGGACAT GTTGAATTGGCAGCTCTACTTATTGAAAGGGGAGCAAATCTTGAAGAAGTTAATGATGAAGGATACACTCCCTTGATGGAAGCTGCCCGG GAAGGACATGAAGAAATGGTGGCACTACTCTTAGCACAAGGAGCAAATATAAATGCCCAGACAGAAGAAACTCAAGAAACTGCTCTTACT TTGGCTTGCTGTGGAGGATTTTCTGAAGTTGCAGACTTTCTTATTAAGGCAGGGGCTGATATAGAACTTGGCTGCTCCACACCTCTGATG GAGGCATCTCAGGAGGGACACCTGGAATTGGTTAAATATTTGCTGGCTTCTGGCGCTAATGTGCATGCTACAACAGCAACAGGAGACACA GCCTTAACCTATGCTTGTGAAAATGGACATACGGATGTTGCAGATGTTTTACTTCAAGCAGGGGCTGATTTAGAACATGAATCTGAAGGT GGAAGAACACCTTTGATGAAAGCTGCAAGAGCTGGTCATTTGTGCACTGTGCAGTTTCTTATTAGCAAAGGTGCCAATGTTAACAGGGCT ACAGCCAATAATGATCATACAGTAGTGTCGCTGGCATGTGCAGGAGGCCACCTGGCAGTTGTTGAGCTTCTCTTGGCTCATGGGGCTGAC CCTACTCATCGACTCAAGGATGGTTCAACAATGCTCATTGAAGCTGCAAAGGGTGGCCATACTAATGTAGTTTCTTATCTGTTGGATTAT CCAAATAATGTTCTGTCAGTTCCCACCACAGATGTGTCTCAGCTCCCTCCACCTTCTCAAGATCAGTCTCAGGTCAAGAGCAATCTGAAT >In-frame_ANKHD1_ENST00000297183_chr5_139865317_+_PAIP2_ENST00000265192_chr5_138704422_+_2208nt ATGCTGACTGATAGCGGAGGCGGCGGCACCTCCTTTGAGGAGGACCTGGACTCTGTGGCTCCGCGATCCGCCCCAGCTGGGGCCTCGGAG CCGCCTCCGCCGGGAGGGGTCGGTCTGGGGATCCGCACCGTGAGGCTCTTTGGGGAGGCCGGGCCAGCGTCGGGAGTCGGCAGCAGCGGC GGCGGCGGCAGCGGCAGCGGTACGGGCGGAGGGGACGCGGCGCTGGATTTCAAGTTGGCGGCTGCCGTGCTGAGGACCGGGGGTGGAGGT GGTGCCTCTGGCAGTGACGAGGACGAAGTGTCCGAGGTTGAATCATTTATTTTGGACCAAGAAGATCTGGATAACCCAGTGCTTAAAACA ACATCAGAGATATTCTTATCAAGTACTGCAGAAGGAGCAGACTTACGCACTGTGGATCCAGAGACACAGGCACGACTAGAAGCATTGCTA GAAGCAGCAGGAATTGGCAAATTGTCAACTGCTGATGGTAAAGCTTTTGCAGATCCTGAGGTACTCCGGAGACTGACATCCTCAGTTAGT TGTGCACTGGATGAAGCTGCTGCTGCACTGACACGGATGAAAGCAGAAAACAGCCACAATGCAGGACAAGTGGACACTCGCAGTCTAGCA GAAGCTTGTTCAGATGGGGATGTTAATGCTGTTCGTAAATTGCTAGATGAAGGCAGAAGTGTAAATGAACATACAGAAGAAGGAGAAAGC CTGCTGTGTTTGGCTTGTTCAGCAGGGTATTATGAATTAGCACAAGTATTGCTTGCTATGCATGCTAATGTTGAAGATCGAGGGAATAAA GGAGACATAACTCCCCTGATGGCAGCTTCCAGTGGAGGTTACTTAGATATTGTGAAATTATTACTTCTTCATGATGCTGATGTCAACTCC CAGTCTGCAACAGGAAACACTGCGCTAACTTATGCATGTGCTGGAGGATTTGTTGACATTGTTAAAGTGCTCCTTAATGAAGGTGCAAAT ATAGAAGATCATAATGAAAATGGACATACTCCCTTAATGGAAGCAGCCAGTGCAGGTCATGTGGAAGTTGCAAGAGTTCTTTTAGATCAT GGTGCAGGCATCAACACTCATTCTAATGAATTCAAAGAAAGTGCTCTAACACTTGCTTGCTACAAAGGCCATTTGGATATGGTTCGCTTT CTACTTGAAGCTGGTGCAGATCAAGAGCACAAAACAGATGAGATGCACACTGCCTTAATGGAGGCCTGCATGGATGGACATGTAGAGGTG GCACGTTTGCTTTTGGATAGTGGTGCTCAAGTGAACATGCCTGCAGATTCATTTGAATCTCCATTGACGCTAGCTGCCTGTGGAGGACAT GTTGAATTGGCAGCTCTACTTATTGAAAGGGGAGCAAATCTTGAAGAAGTTAATGATGAAGGATACACTCCCTTGATGGAAGCTGCCCGG GAAGGACATGAAGAAATGGTGGCACTACTCTTAGCACAAGGAGCAAATATAAATGCCCAGACAGAAGAAACTCAAGAAACTGCTCTTACT TTGGCTTGCTGTGGAGGATTTTCTGAAGTTGCAGACTTTCTTATTAAGGCAGGGGCTGATATAGAACTTGGCTGCTCCACACCTCTGATG GAGGCATCTCAGGAGGGACACCTGGAATTGGTTAAATATTTGCTGGCTTCTGGCGCTAATGTGCATGCTACAACAGCAACAGGAGACACA GCCTTAACCTATGCTTGTGAAAATGGACATACGGATGTTGCAGATGTTTTACTTCAAGCAGGGGCTGATTTAGAACATGAATCTGAAGGT GGAAGAACACCTTTGATGAAAGCTGCAAGAGCTGGTCATTTGTGCACTGTGCAGTTTCTTATTAGCAAAGGTGCCAATGTTAACAGGGCT ACAGCCAATAATGATCATACAGTAGTGTCGCTGGCATGTGCAGGAGGCCACCTGGCAGTTGTTGAGCTTCTCTTGGCTCATGGGGCTGAC CCTACTCATCGACTCAAGGATGGTTCAACAATGCTCATTGAAGCTGCAAAGGGTGGCCATACTAATGTAGTTTCTTATCTGTTGGATTAT CCAAATAATGTTCTGTCAGTTCCCACCACAGATGTGTCTCAGCTCCCTCCACCTTCTCAAGATCAGTCTCAGGTCAAGAGCAATCTGAAT |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_ANKHD1_ENST00000360839_chr5_139865317_+_PAIP2_ENST00000265192_chr5_138704422_+_3262nt GGGAGGCAGCAGGTTAGGCAGTGAGAAGTTAGTGGCGCTGCTGGGACGGGGGAAAGGAGACGCTTCTTCCTCTTGCTGCTCTTCTCGTTC CCGAGATCAGCGGCGGCGGTGACCGCGAGTGGGTCGGCACCGTCTCCGGCTCCGGGTGCGAACAATGCTGACTGATAGCGGAGGCGGCGG CACCTCCTTTGAGGAGGACCTGGACTCTGTGGCTCCGCGATCCGCCCCAGCTGGGGCCTCGGAGCCGCCTCCGCCGGGAGGGGTCGGTCT GGGGATCCGCACCGTGAGGCTCTTTGGGGAGGCCGGGCCAGCGTCGGGAGTCGGCAGCAGCGGCGGCGGCGGCAGCGGCAGCGGTACGGG CGGAGGGGACGCGGCGCTGGATTTCAAGTTGGCGGCTGCCGTGCTGAGGACCGGGGGTGGAGGTGGTGCCTCTGGCAGTGACGAGGACGA AGTGTCCGAGGTTGAATCATTTATTTTGGACCAAGAAGATCTGGATAACCCAGTGCTTAAAACAACATCAGAGATATTCTTATCAAGTAC TGCAGAAGGAGCAGACTTACGCACTGTGGATCCAGAGACACAGGCACGACTAGAAGCATTGCTAGAAGCAGCAGGAATTGGCAAATTGTC AACTGCTGATGGTAAAGCTTTTGCAGATCCTGAGGTACTCCGGAGACTGACATCCTCAGTTAGTTGTGCACTGGATGAAGCTGCTGCTGC ACTGACACGGATGAAAGCAGAAAACAGCCACAATGCAGGACAAGTGGACACTCGCAGTCTAGCAGAAGCTTGTTCAGATGGGGATGTTAA TGCTGTTCGTAAATTGCTAGATGAAGGCAGAAGTGTAAATGAACATACAGAAGAAGGAGAAAGCCTGCTGTGTTTGGCTTGTTCAGCAGG GTATTATGAATTAGCACAAGTATTGCTTGCTATGCATGCTAATGTTGAAGATCGAGGGAATAAAGGAGACATAACTCCCCTGATGGCAGC TTCCAGTGGAGGTTACTTAGATATTGTGAAATTATTACTTCTTCATGATGCTGATGTCAACTCCCAGTCTGCAACAGGAAACACTGCGCT AACTTATGCATGTGCTGGAGGATTTGTTGACATTGTTAAAGTGCTCCTTAATGAAGGTGCAAATATAGAAGATCATAATGAAAATGGACA TACTCCCTTAATGGAAGCAGCCAGTGCAGGTCATGTGGAAGTTGCAAGAGTTCTTTTAGATCATGGTGCAGGCATCAACACTCATTCTAA TGAATTCAAAGAAAGTGCTCTAACACTTGCTTGCTACAAAGGCCATTTGGATATGGTTCGCTTTCTACTTGAAGCTGGTGCAGATCAAGA GCACAAAACAGATGAGATGCACACTGCCTTAATGGAGGCCTGCATGGATGGACATGTAGAGGTGGCACGTTTGCTTTTGGATAGTGGTGC TCAAGTGAACATGCCTGCAGATTCATTTGAATCTCCATTGACGCTAGCTGCCTGTGGAGGACATGTTGAATTGGCAGCTCTACTTATTGA AAGGGGAGCAAATCTTGAAGAAGTTAATGATGAAGGATACACTCCCTTGATGGAAGCTGCCCGGGAAGGACATGAAGAAATGGTGGCACT ACTCTTAGCACAAGGAGCAAATATAAATGCCCAGACAGAAGAAACTCAAGAAACTGCTCTTACTTTGGCTTGCTGTGGAGGATTTTCTGA AGTTGCAGACTTTCTTATTAAGGCAGGGGCTGATATAGAACTTGGCTGCTCCACACCTCTGATGGAGGCATCTCAGGAGGGACACCTGGA ATTGGTTAAATATTTGCTGGCTTCTGGCGCTAATGTGCATGCTACAACAGCAACAGGAGACACAGCCTTAACCTATGCTTGTGAAAATGG ACATACGGATGTTGCAGATGTTTTACTTCAAGCAGGGGCTGATTTAGAACATGAATCTGAAGGTGGAAGAACACCTTTGATGAAAGCTGC AAGAGCTGGTCATTTGTGCACTGTGCAGTTTCTTATTAGCAAAGGTGCCAATGTTAACAGGGCTACAGCCAATAATGATCATACAGTAGT GTCGCTGGCATGTGCAGGAGGCCACCTGGCAGTTGTTGAGCTTCTCTTGGCTCATGGGGCTGACCCTACTCATCGACTCAAGGATGGTTC AACAATGCTCATTGAAGCTGCAAAGGGTGGCCATACTAATGTAGTTTCTTATCTGTTGGATTATCCAAATAATGTTCTGTCAGTTCCCAC CACAGATGTGTCTCAGCTCCCTCCACCTTCTCAAGATCAGTCTCAGGTCAAGAGCAATCTGAATCCAAATGCAAAGGAGTTTGTTCCTGG GGTGAAGTACGGAAATATTTGAGTAGACGGGGCCCTCTTTTGGTGGATGTAGCACAATTTCCACACTGTGAAGGCAGTATTAGAAGACTT AATTGTAAAAGCTCTCTTGTCACTGTGTTACACTTATGCATTGCCAAAGTTTTTGTTAGTCTTGCATGCTTAATAAAAGTGCTGAGACTG TTACTAAGTAAAAAGCTGTCAAACATTTACTGAAAATAGAATTGGCCCCATGGCTTGATGTGAAGACAGCAAGGAAAGAAGCACCAGTCA AGTTGTGAACAAGCACCAAATTAAAAGACCTAAACCTTACCAAATTGTCTTTTTTTGAGGCTAATCTATCACTTGTTAATGTCTAAACTT TAAAATCAGTACATTTAATTTGAGTTCCAACTGTTAAGCATATTTCTCAGACTTAAATTTGATTATGTCCCCATCAAAAAGAATCTCCAT TTTCTGAAGGTCTGTTAGTTAATTTGAGATAATTTGTTAAAGGCAAGTATGTCATATTACTGAGGCTACAAGTTAGTCAGCAGATGAGTG CCAGTCCAGCCTTTTCTGGTATGTTATTGTTAGAAATATTGAGTTCTAATGTTACATCTGAGGAAGTATGTAATTTGAGAATTGTAACTT CTAAGGGATTCACTGCATCATAGCTATGCCTGTATGGAGTCTAACATATGACCAATACCAACCCATAATCCAGCTGAACAAAGATACTGT AACATGATTTGAGTGGTGCTTTTCCTTGCTTTGTTAACCATCACGAGAGTCTGCAGCACAACTTTTAACAAAGCTAGAACAGTTTTGGCT TCTTAAACTTCATATTTGGGTAGGTTAAGCTGCCATACGTGTTCAGTGTGAATAGTGTTTAAGTTGAAAATATTGTAAAAAAATTATATT >In-frame_ANKHD1_ENST00000297183_chr5_139865317_+_PAIP2_ENST00000265192_chr5_138704422_+_3232nt AGTGGCGCTGCTGGGACGGGGGAAAGGAGACGCTTCTTCCTCTTGCTGCTCTTCTCGTTCCCGAGATCAGCGGCGGCGGTGACCGCGAGT GGGTCGGCACCGTCTCCGGCTCCGGGTGCGAACAATGCTGACTGATAGCGGAGGCGGCGGCACCTCCTTTGAGGAGGACCTGGACTCTGT GGCTCCGCGATCCGCCCCAGCTGGGGCCTCGGAGCCGCCTCCGCCGGGAGGGGTCGGTCTGGGGATCCGCACCGTGAGGCTCTTTGGGGA GGCCGGGCCAGCGTCGGGAGTCGGCAGCAGCGGCGGCGGCGGCAGCGGCAGCGGTACGGGCGGAGGGGACGCGGCGCTGGATTTCAAGTT GGCGGCTGCCGTGCTGAGGACCGGGGGTGGAGGTGGTGCCTCTGGCAGTGACGAGGACGAAGTGTCCGAGGTTGAATCATTTATTTTGGA CCAAGAAGATCTGGATAACCCAGTGCTTAAAACAACATCAGAGATATTCTTATCAAGTACTGCAGAAGGAGCAGACTTACGCACTGTGGA TCCAGAGACACAGGCACGACTAGAAGCATTGCTAGAAGCAGCAGGAATTGGCAAATTGTCAACTGCTGATGGTAAAGCTTTTGCAGATCC TGAGGTACTCCGGAGACTGACATCCTCAGTTAGTTGTGCACTGGATGAAGCTGCTGCTGCACTGACACGGATGAAAGCAGAAAACAGCCA CAATGCAGGACAAGTGGACACTCGCAGTCTAGCAGAAGCTTGTTCAGATGGGGATGTTAATGCTGTTCGTAAATTGCTAGATGAAGGCAG AAGTGTAAATGAACATACAGAAGAAGGAGAAAGCCTGCTGTGTTTGGCTTGTTCAGCAGGGTATTATGAATTAGCACAAGTATTGCTTGC TATGCATGCTAATGTTGAAGATCGAGGGAATAAAGGAGACATAACTCCCCTGATGGCAGCTTCCAGTGGAGGTTACTTAGATATTGTGAA ATTATTACTTCTTCATGATGCTGATGTCAACTCCCAGTCTGCAACAGGAAACACTGCGCTAACTTATGCATGTGCTGGAGGATTTGTTGA CATTGTTAAAGTGCTCCTTAATGAAGGTGCAAATATAGAAGATCATAATGAAAATGGACATACTCCCTTAATGGAAGCAGCCAGTGCAGG TCATGTGGAAGTTGCAAGAGTTCTTTTAGATCATGGTGCAGGCATCAACACTCATTCTAATGAATTCAAAGAAAGTGCTCTAACACTTGC TTGCTACAAAGGCCATTTGGATATGGTTCGCTTTCTACTTGAAGCTGGTGCAGATCAAGAGCACAAAACAGATGAGATGCACACTGCCTT AATGGAGGCCTGCATGGATGGACATGTAGAGGTGGCACGTTTGCTTTTGGATAGTGGTGCTCAAGTGAACATGCCTGCAGATTCATTTGA ATCTCCATTGACGCTAGCTGCCTGTGGAGGACATGTTGAATTGGCAGCTCTACTTATTGAAAGGGGAGCAAATCTTGAAGAAGTTAATGA TGAAGGATACACTCCCTTGATGGAAGCTGCCCGGGAAGGACATGAAGAAATGGTGGCACTACTCTTAGCACAAGGAGCAAATATAAATGC CCAGACAGAAGAAACTCAAGAAACTGCTCTTACTTTGGCTTGCTGTGGAGGATTTTCTGAAGTTGCAGACTTTCTTATTAAGGCAGGGGC TGATATAGAACTTGGCTGCTCCACACCTCTGATGGAGGCATCTCAGGAGGGACACCTGGAATTGGTTAAATATTTGCTGGCTTCTGGCGC TAATGTGCATGCTACAACAGCAACAGGAGACACAGCCTTAACCTATGCTTGTGAAAATGGACATACGGATGTTGCAGATGTTTTACTTCA AGCAGGGGCTGATTTAGAACATGAATCTGAAGGTGGAAGAACACCTTTGATGAAAGCTGCAAGAGCTGGTCATTTGTGCACTGTGCAGTT TCTTATTAGCAAAGGTGCCAATGTTAACAGGGCTACAGCCAATAATGATCATACAGTAGTGTCGCTGGCATGTGCAGGAGGCCACCTGGC AGTTGTTGAGCTTCTCTTGGCTCATGGGGCTGACCCTACTCATCGACTCAAGGATGGTTCAACAATGCTCATTGAAGCTGCAAAGGGTGG CCATACTAATGTAGTTTCTTATCTGTTGGATTATCCAAATAATGTTCTGTCAGTTCCCACCACAGATGTGTCTCAGCTCCCTCCACCTTC TCAAGATCAGTCTCAGGTCAAGAGCAATCTGAATCCAAATGCAAAGGAGTTTGTTCCTGGGGTGAAGTACGGAAATATTTGAGTAGACGG GGCCCTCTTTTGGTGGATGTAGCACAATTTCCACACTGTGAAGGCAGTATTAGAAGACTTAATTGTAAAAGCTCTCTTGTCACTGTGTTA CACTTATGCATTGCCAAAGTTTTTGTTAGTCTTGCATGCTTAATAAAAGTGCTGAGACTGTTACTAAGTAAAAAGCTGTCAAACATTTAC TGAAAATAGAATTGGCCCCATGGCTTGATGTGAAGACAGCAAGGAAAGAAGCACCAGTCAAGTTGTGAACAAGCACCAAATTAAAAGACC TAAACCTTACCAAATTGTCTTTTTTTGAGGCTAATCTATCACTTGTTAATGTCTAAACTTTAAAATCAGTACATTTAATTTGAGTTCCAA CTGTTAAGCATATTTCTCAGACTTAAATTTGATTATGTCCCCATCAAAAAGAATCTCCATTTTCTGAAGGTCTGTTAGTTAATTTGAGAT AATTTGTTAAAGGCAAGTATGTCATATTACTGAGGCTACAAGTTAGTCAGCAGATGAGTGCCAGTCCAGCCTTTTCTGGTATGTTATTGT TAGAAATATTGAGTTCTAATGTTACATCTGAGGAAGTATGTAATTTGAGAATTGTAACTTCTAAGGGATTCACTGCATCATAGCTATGCC TGTATGGAGTCTAACATATGACCAATACCAACCCATAATCCAGCTGAACAAAGATACTGTAACATGATTTGAGTGGTGCTTTTCCTTGCT TTGTTAACCATCACGAGAGTCTGCAGCACAACTTTTAACAAAGCTAGAACAGTTTTGGCTTCTTAAACTTCATATTTGGGTAGGTTAAGC |
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FusionGenePPI for ANKHD1_PAIP2 |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
ANKHD1 | POLR2M, UNC93B1, SIRT7, CAND1, ATXN1, ATXN1L, VCP, NFKBIE, ZNF346, ADARB2, MOV10, NXF1, HOXC4, MAGEA1, ZC3H3, FOSL2, SFRP4, RBM23, SEC16A, CDT1, SKA3, FOS, FOXQ1, STX11, FGF8, TRIM41, FGF3, SIX2, HOXD4, IRF9, AKAP17A, ZNF263, ZNF433, IL17RA, H2AFX, NOB1, C6orf141, TULP3, CERKL, CDX1, TRIM25 | PAIP2 | PABPC1, UBR5, APP, IGBP1, BAG3, RPL11, NXF1, HNRNPA1, PAIP1, SCCPDH, XPO1, TRIM25 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for ANKHD1_PAIP2 |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ANKHD1_PAIP2 |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |