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Fusion gene ID: 17034 |
FusionGeneSummary for IDO1_IPO4 |
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Fusion gene information | Fusion gene name: IDO1_IPO4 | Fusion gene ID: 17034 | Hgene | Tgene | Gene symbol | IDO1 | IPO4 | Gene ID | 3620 | 79711 |
Gene name | indoleamine 2,3-dioxygenase 1 | importin 4 | |
Synonyms | IDO|IDO-1|INDO | Imp4 | |
Cytomap | 8p11.21 | 14q12 | |
Type of gene | protein-coding | protein-coding | |
Description | indoleamine 2,3-dioxygenase 1indolamine 2,3 dioxygenaseindole 2,3-dioxygenaseindoleamine-pyrrole 2,3-dioxygenase | importin-4imp4bimportin-4bran-binding protein 4ranBP4 | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | P14902 | Q8TEX9 | |
Ensembl transtripts involved in fusion gene | ENST00000522495, ENST00000518237, | ENST00000354464, | |
Fusion gene scores | * DoF score | 2 X 2 X 1=4 | 2 X 2 X 1=4 |
# samples | 2 | 2 | |
** MAII score | log2(2/4*10)=2.32192809488736 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: IDO1 [Title/Abstract] AND IPO4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | IPO4 | GO:0006335 | DNA replication-dependent nucleosome assembly | 14718166 |
Tgene | IPO4 | GO:0006336 | DNA replication-independent nucleosome assembly | 14718166 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF917390 | IDO1 | chr8 | 39780127 | + | IPO4 | chr14 | 24658704 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-intron | ENST00000522495 | ENST00000354464 | IDO1 | chr8 | 39780127 | + | IPO4 | chr14 | 24658704 | - |
5CDS-intron | ENST00000518237 | ENST00000354464 | IDO1 | chr8 | 39780127 | + | IPO4 | chr14 | 24658704 | - |
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FusionProtFeatures for IDO1_IPO4 |
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Hgene | Tgene |
IDO1 | IPO4 |
Catalyzes the first and rate limiting step of thecatabolism of the essential amino acid tryptophan along thekynurenine pathway (PubMed:17671174). Involved in the peripheralimmune tolerance, contributing to maintain homeostasis bypreventing autoimmunity or immunopathology that would result fromuncontrolled and overreacting immune responses (PubMed:25691885).Tryptophan shortage inhibits T lymphocytes division andaccumulation of tryptophan catabolites induces T-cell apoptosisand differentiation of regulatory T-cells (PubMed:25691885). Actsas a suppressor of anti-tumor immunity (PubMed:23103127,PubMed:25157255, PubMed:14502282, PubMed:25691885). Limits thegrowth of intracellular pathogens by depriving tryptophan(PubMed:25691885). Protects the fetus from maternal immunerejection (PubMed:25691885). {ECO:0000269|PubMed:14502282,ECO:0000269|PubMed:17671174, ECO:0000303|PubMed:23103127,ECO:0000303|PubMed:25157255, ECO:0000303|PubMed:25691885}. | Functions in nuclear protein import as nuclear transportreceptor. Serves as receptor for nuclear localization signals(NLS) in cargo substrates. Is thought to mediate docking of theimportin/substrate complex to the nuclear pore complex (NPC)through binding to nucleoporin and the complex is subsequentlytranslocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ranbinds to the importin, the importin/substrate complex dissociatesand importin is re-exported from the nucleus to the cytoplasmwhere GTP hydrolysis releases Ran. The directionality of nuclearimport is thought to be conferred by an asymmetric distribution ofthe GTP- and GDP-bound forms of Ran between the cytoplasm andnucleus (By similarity). Mediates the nuclear import of RPS3A. Invitro, mediates the nuclear import of human cytomegalovirus UL84by recognizing a non-classical NLS. {ECO:0000250,ECO:0000269|PubMed:11823430}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for IDO1_IPO4 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for IDO1_IPO4 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for IDO1_IPO4 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | IDO1 | P14902 | DB00435 | Nitric Oxide | Indoleamine 2,3-dioxygenase 1 | small molecule | approved |
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RelatedDiseases for IDO1_IPO4 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | IDO1 | C0011570 | Mental Depression | 4 | PSYGENET |
Hgene | IDO1 | C0011581 | Depressive disorder | 4 | PSYGENET |
Hgene | IDO1 | C0014175 | Endometriosis | 1 | CTD_human |
Hgene | IDO1 | C0021368 | Inflammation | 1 | CTD_human |
Hgene | IDO1 | C0027643 | Neoplasm Recurrence, Local | 1 | CTD_human |
Hgene | IDO1 | C0028754 | Obesity | 1 | CTD_human |
Hgene | IDO1 | C0043094 | Weight Gain | 1 | CTD_human |
Hgene | IDO1 | C0178417 | Anhedonia | 1 | PSYGENET |
Hgene | IDO1 | C0338715 | Drug-induced depressive state | 1 | PSYGENET |
Hgene | IDO1 | C0524851 | Neurodegenerative Disorders | 1 | CTD_human |
Hgene | IDO1 | C0581391 | Chronic depression | 1 | PSYGENET |
Hgene | IDO1 | C1458155 | Mammary Neoplasms | 1 | CTD_human |