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Fusion gene ID: 16866 |
FusionGeneSummary for HSPA4L_INIP |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: HSPA4L_INIP | Fusion gene ID: 16866 | Hgene | Tgene | Gene symbol | HSPA4L | INIP | Gene ID | 22824 | 58493 |
| Gene name | heat shock protein family A (Hsp70) member 4 like | INTS3 and NABP interacting protein | |
| Synonyms | APG-1|HSPH3|Osp94 | C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 | |
| Cytomap | 4q28.1 | 9q32 | |
| Type of gene | protein-coding | protein-coding | |
| Description | heat shock 70 kDa protein 4Lheat shock 70 kDa protein 4-like proteinheat shock 70-related protein APG-1heat shock 70kDa protein 4-likeheat shock protein (hsp110 family)osmotic stress protein 94testis tissue sperm-binding protein Li 64n | SOSS complex subunit CSSB-interacting protein 1hSSB-interacting protein 1minute INTS3/hSSB-associated elementsensor of single-strand DNA complex subunit Csensor of ssDNA subunit Csingle-stranded DNA-binding protein-interacting protein 1 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | O95757 | Q9NRY2 | |
| Ensembl transtripts involved in fusion gene | ENST00000439123, ENST00000508776, ENST00000296464, ENST00000505726, ENST00000515262, | ENST00000374242, ENST00000374238, ENST00000497712, ENST00000374236, ENST00000374234, | |
| Fusion gene scores | * DoF score | 2 X 2 X 1=4 | 2 X 2 X 2=8 |
| # samples | 2 | 2 | |
| ** MAII score | log2(2/4*10)=2.32192809488736 | log2(2/8*10)=1.32192809488736 | |
| Context | PubMed: HSPA4L [Title/Abstract] AND INIP [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| ChiTaRS3.1 | BC013097 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-intron | ENST00000439123 | ENST00000374242 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000439123 | ENST00000374238 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000439123 | ENST00000497712 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000439123 | ENST00000374236 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000439123 | ENST00000374234 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000508776 | ENST00000374242 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000508776 | ENST00000374238 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000508776 | ENST00000497712 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000508776 | ENST00000374236 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000508776 | ENST00000374234 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000296464 | ENST00000374242 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000296464 | ENST00000374238 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000296464 | ENST00000497712 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000296464 | ENST00000374236 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000296464 | ENST00000374234 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000505726 | ENST00000374242 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000505726 | ENST00000374238 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000505726 | ENST00000497712 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000505726 | ENST00000374236 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000505726 | ENST00000374234 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000515262 | ENST00000374242 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000515262 | ENST00000374238 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000515262 | ENST00000497712 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000515262 | ENST00000374236 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
| intron-intron | ENST00000515262 | ENST00000374234 | HSPA4L | chr4 | 128730752 | + | INIP | chr9 | 115454569 | + |
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FusionProtFeatures for HSPA4L_INIP |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| HSPA4L | INIP |
| Possesses chaperone activity in vitro where it inhibitsaggregation of citrate synthase. {ECO:0000250}. | Component of the SOSS complex, a multiprotein complexthat functions downstream of the MRN complex to promote DNA repairand G2/M checkpoint. The SOSS complex associates with single-stranded DNA at DNA lesions and influences diverse endpoints inthe cellular DNA damage response including cell-cycle checkpointactivation, recombinational repair and maintenance of genomicstability. Required for efficient homologous recombination-dependent repair of double-strand breaks (DSBs) and ATM-dependentsignaling pathways. {ECO:0000269|PubMed:19605351,ECO:0000269|PubMed:19683501}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for HSPA4L_INIP |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for HSPA4L_INIP |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for HSPA4L_INIP |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for HSPA4L_INIP |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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