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Fusion gene ID: 16654 |
FusionGeneSummary for HNRNPU_SLC36A4 |
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Fusion gene information | Fusion gene name: HNRNPU_SLC36A4 | Fusion gene ID: 16654 | Hgene | Tgene | Gene symbol | HNRNPU | SLC36A4 | Gene ID | 3192 | 120103 |
Gene name | heterogeneous nuclear ribonucleoprotein U | solute carrier family 36 member 4 | |
Synonyms | EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120 | PAT4 | |
Cytomap | 1q44 | 11q21 | |
Type of gene | protein-coding | protein-coding | |
Description | heterogeneous nuclear ribonucleoprotein UHNRNPU antisense RNA 1heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)nuclear p120 ribonucleoproteinp120 nuclear protein | proton-coupled amino acid transporter 4solute carrier family 36 (proton/amino acid symporter), member 4 | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | Q00839 | Q6YBV0 | |
Ensembl transtripts involved in fusion gene | ENST00000444376, ENST00000283179, | ENST00000326402, ENST00000529184, | |
Fusion gene scores | * DoF score | 7 X 10 X 2=140 | 1 X 1 X 1=1 |
# samples | 12 | 1 | |
** MAII score | log2(12/140*10)=-0.222392421336448 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: HNRNPU [Title/Abstract] AND SLC36A4 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | HNRNPU | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | 22325991 |
Hgene | HNRNPU | GO:0048255 | mRNA stabilization | 17174306 |
Hgene | HNRNPU | GO:0071385 | cellular response to glucocorticoid stimulus | 9353307 |
Tgene | SLC36A4 | GO:0015808 | L-alanine transport | 21097500 |
Tgene | SLC36A4 | GO:0015824 | proline transport | 21097500 |
Tgene | SLC36A4 | GO:0015827 | tryptophan transport | 21097500 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | PRAD | TCGA-KK-A8I8-01A | HNRNPU | chr1 | 245021313 | - | SLC36A4 | chr11 | 92918980 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000444376 | ENST00000326402 | HNRNPU | chr1 | 245021313 | - | SLC36A4 | chr11 | 92918980 | - |
5CDS-5UTR | ENST00000444376 | ENST00000529184 | HNRNPU | chr1 | 245021313 | - | SLC36A4 | chr11 | 92918980 | - |
Frame-shift | ENST00000283179 | ENST00000326402 | HNRNPU | chr1 | 245021313 | - | SLC36A4 | chr11 | 92918980 | - |
5CDS-5UTR | ENST00000283179 | ENST00000529184 | HNRNPU | chr1 | 245021313 | - | SLC36A4 | chr11 | 92918980 | - |
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FusionProtFeatures for HNRNPU_SLC36A4 |
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Hgene | Tgene |
HNRNPU | SLC36A4 |
DNA- and RNA-binding protein involved in severalcellular processes such as nuclear chromatin organization,telomere-length regulation, transcription, mRNA alternativesplicing and stability, Xist-mediated transcriptional silencingand mitotic cell progression (PubMed:10490622, PubMed:18082603,PubMed:19029303, PubMed:22325991, PubMed:25986610,PubMed:28622508). Plays a role in the regulation of interphaselarge-scale gene-rich chromatin organization through chromatin-associated RNAs (caRNAs) in a transcription-dependent manner, andthereby maintains genomic stability (PubMed:1324173,PubMed:8174554, PubMed:28622508). Required for the localization ofthe long non-coding Xist RNA on the inactive chromosome X (Xi) andthe subsequent initiation and maintenance of X-linkedtranscriptional gene silencing during X-inactivation (Bysimilarity). Plays a role as a RNA polymerase II (Pol II)holoenzyme transcription regulator (PubMed:8174554,PubMed:9353307, PubMed:10490622, PubMed:15711563, PubMed:19617346,PubMed:23811339). Promotes transcription initiation by directassociation with the core-TFIIH basal transcription factor complexfor the assembly of a functional pre-initiation complex with PolII in a actin-dependent manner (PubMed:10490622, PubMed:15711563).Blocks Pol II transcription elongation activity by inhibiting theC-terminal domain (CTD) phosphorylation of Pol II and dissociatesfrom Pol II pre-initiation complex prior to productivetranscription elongation (PubMed:10490622). Positively regulatesCBX5-induced transcriptional gene silencing and retention of CBX5in the nucleus (PubMed:19617346). Negatively regulatesglucocorticoid-mediated transcriptional activation(PubMed:9353307). Key regulator of transcription initiation andelongation in embryonic stem cells upon leukemia inhibitory factor(LIF) signaling (By similarity). Involved in the long non-codingRNA H19-mediated Pol II transcriptional repression(PubMed:23811339). Participates in the circadian regulation of thecore clock component ARNTL/BMAL1 transcription (By similarity).Plays a role in the regulation of telomere length(PubMed:18082603). Plays a role as a global pre-mRNA alternativesplicing modulator by regulating U2 small nuclearribonucleoprotein (snRNP) biogenesis (PubMed:22325991). Plays arole in mRNA stability (PubMed:17174306, PubMed:17289661,PubMed:19029303). Component of the CRD-mediated complex thatpromotes MYC mRNA stabilization (PubMed:19029303). Enhances theexpression of specific genes, such as tumor necrosis factor TNFA,by regulating mRNA stability, possibly through binding to the 3'-untranslated region (UTR) (PubMed:17174306). Plays a role inmitotic cell cycle regulation (PubMed:21242313, PubMed:25986610).Involved in the formation of stable mitotic spindle microtubules(MTs) attachment to kinetochore, spindle organization andchromosome congression (PubMed:21242313). Phosphorylation at Ser-59 by PLK1 is required for chromosome alignement and segregationand progression through mitosis (PubMed:25986610). Contributesalso to the targeting of AURKA to mitotic spindle MTs(PubMed:21242313). Binds to double- and single-stranded DNA andRNA, poly(A), poly(C) and poly(G) oligoribonucleotides(PubMed:1628625, PubMed:8068679, PubMed:8174554, PubMed:9204873,PubMed:9405365). Binds to chromatin-associated RNAs (caRNAs)(PubMed:28622508). Associates with chromatin to scaffold/matrixattachment region (S/MAR) elements in a chromatin-associated RNAs(caRNAs)-dependent manner (PubMed:7509195, PubMed:1324173,PubMed:9204873, PubMed:9405365, PubMed:10671544, PubMed:11003645,PubMed:11909954, PubMed:28622508). Binds to the Xist RNA(PubMed:26244333). Binds the long non-coding H19 RNA(PubMed:23811339). Binds to SMN1/2 pre-mRNAs at G/U-rich regions(PubMed:22325991). Binds to small nuclear RNAs (snRNAs)(PubMed:22325991). Binds to the 3'-UTR of TNFA mRNA(PubMed:17174306). Binds (via RNA-binding RGG-box region) to thelong non-coding Xist RNA; this binding is direct and bridges theXist RNA and the inactive chromosome X (Xi) (By similarity). Alsonegatively regulates embryonic stem cell differentiation upon LIFsignaling (By similarity). Required for embryonic development (Bysimilarity). Binds to brown fat long non-coding RNA 1 (Blnc1);facilitates the recruitment of Blnc1 by ZBTB7B required to drivebrown and beige fat development and thermogenesis (By similarity).{ECO:0000250|UniProtKB:Q8VEK3, ECO:0000269|PubMed:10490622,ECO:0000269|PubMed:10671544, ECO:0000269|PubMed:11003645,ECO:0000269|PubMed:11909954, ECO:0000269|PubMed:1324173,ECO:0000269|PubMed:15711563, ECO:0000269|PubMed:1628625,ECO:0000269|PubMed:17174306, ECO:0000269|PubMed:17289661,ECO:0000269|PubMed:18082603, ECO:0000269|PubMed:19029303,ECO:0000269|PubMed:19617346, ECO:0000269|PubMed:21242313,ECO:0000269|PubMed:22325991, ECO:0000269|PubMed:23811339,ECO:0000269|PubMed:25986610, ECO:0000269|PubMed:26244333,ECO:0000269|PubMed:28622508, ECO:0000269|PubMed:7509195,ECO:0000269|PubMed:8068679, ECO:0000269|PubMed:8174554,ECO:0000269|PubMed:9204873, ECO:0000269|PubMed:9353307,ECO:0000269|PubMed:9405365}. (Microbial infection) Negatively regulatesimmunodeficiency virus type 1 (HIV-1) replication by preventingthe accumulation of viral mRNA transcripts in the cytoplasm.{ECO:0000269|PubMed:16916646}. | Functions as a sodium-independent electroneutraltransporter for tryptophan, proline and alanine. Inhibited bysarcosine. {ECO:0000269|PubMed:21097500}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for HNRNPU_SLC36A4 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for HNRNPU_SLC36A4 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
HNRNPU | SFN, EP300, PRMT1, NR3C1, GTF2F1, POLR2A, CDK7, NDN, GPN1, CDK9, RUVBL2, HNRNPH1, POLR2J, MYC, MAX, PML, RARA, EMD, MORF4L1, MORF4L2, MRGBP, DOT1L, NPM1, UBC, SNW1, DGCR8, RBM39, NOP56, DYRK2, STAU1, IKBKB, NFKBIA, BTRC, VHL, RNF146, SMARCAD1, SREK1, KDM4B, RAD21, NDRG1, HDGF, CENPA, ACTB, SF3A2, ARRB1, ARRB2, ERG, ISG15, NFX1, CUL3, CUL5, CUL2, CDK2, CUL1, COPS5, DCUN1D1, CAND1, NEDD8, GRK5, INPPL1, GRB2, UBXN6, HNRNPK, HNRNPA1, YBX1, EFTUD2, SRSF1, SNRPA1, HNRNPA3, SNRPD1, PRPF8, SNRNP200, SRSF7, PTBP1, U2AF2, U2AF1, SF3A1, PABPC1, NHP2L1, RNPS1, SRSF11, SNRPA, SRSF3, PRPF4, SNRNP70, RPS15A, RPS23, RPL19, RPL6, RPL7A, RPL18, RPS13, RSL1D1, RPS6, RPL7, RPL12, RPS2, RPL18A, RPLP0, RPL23A, EIF4A3, RPS3, NONO, RPS26, TRA2B, RPS4X, HNRNPA0, UPF1, RPS11, RPS24, RPL5, RPLP1, RALY, SART1, RPS16, RPS8, SRRM2, RPLP2, NOP58, RPS14, RPL30, SMU1, USP39, MCM5, LUC7L3, SAP18, EIF6, MYH9, IK, NOP2, THRAP3, GTF3C1, WDR18, MRPS16, FTSJ3, RRS1, LAMP2, TPBG, MRPL52, RRP7A, TRIM55, MRPL42, PCDHA2, NFIA, MRPS34, KRT3, MARCKS, UTP14A, SEPT7, LBR, PDHA2, TRA2A, PRPH, LIMS1, MRPS28, MTCH1, MTCH2, SLC7A5, PGRMC1, RFC4, ATP6V1B1, LAPTM4A, VTN, TMX2, RHOB, KIAA2013, MRPL23, PCDH7, NCSTN, RPL10L, SND1, PTCD1, MRPL44, MRPL48, ZC3H18, ICT1, ITGB4, PTPN1, MRPL51, LMAN1, TPR, SLC25A17, SEPT2, VDAC2, KRT14, ITGA5, MRPL10, LSM14A, S100A9, MRPL13, WBSCR16, SLC25A32, MAGOH, SMURF1, PNKP, FN1, VCAM1, SYNCRIP, HNRNPD, HNRNPH3, IFIT3, IL7R, MAP1LC3A, UBL4A, ITGA4, DHX9, ZNF689, PAN2, CD81, IGSF8, ICAM1, ADRB2, BAG3, CDKN2A, TARDBP, PARK2, TCERG1, PRPF40A, WBP4, GAS7, NEDD4, PIN1, G3BP1, ABCF1, C14orf166, NELFB, YBX3, DDX1, DIMT1, EIF2B2, EIF2B3, EIF3C, EIF3D, FKBP3, FUS, IGF2BP3, ILF2, KRT18, NMT1, RPL35, RPS27, RPS29, MRE11A, SHFM1, RPA3, RPA2, RPA1, WWOX, HSPA5, UBASH3B, LGR4, IVNS1ABP, MDM2, AURKA, AURKB, CEP250, CEP57, HAUS2, CEP70, CEP76, LGALS3BP, MAGED2, NEDD1, TP53, TUBG1, TUBGCP3, TUBGCP4, HUWE1, FBXW11, KAT2B, PHF6, CUL7, OBSL1, CCDC8, UBE2I, EED, RNF2, TXNDC16, PRMT8, RPS6KB2, HSPB1, UNK, NTRK1, CALR, ATP5A1, BTF3L4, EIF3J, HSPA9, MATR3, MDC1, PDCD6, RAB2A, RPL22, RPS25, RPS3A, SAFB, SLC25A5, SMEK2, TRIP10, WRAP53, HSP90B1, PSMD6, RPN1, SCARNA22, PTEN, AHSA1, CACNA2D1, CHD1, DDX5, EIF2B1, ERCC6, FBL, HIST1H1B, HNRNPA2B1, HNRNPAB, HNRNPC, HNRNPL, RPL10, EXOSC4, MRPL50, CDKN2AIP, HSD17B4, IFI16, IGHMBP2, ILF3, RPSA, RPL10A, NVL, EXOSC10, RFC1, RFC2, RFC3, RFC5, RPL3, RPL4, RPL8, RPL9, RPL11, RPL13, RPL15, RPL17, RPL21, RPL24, RPL27, RPL27A, RPL28, RPL32, RPL36A, RPS5, RPS7, RPS9, RPS10, RPS12, RPS15, RPS17, RPS18, RPS19, RPS21, SRP72, SURF6, TOP2A, TPD52, UBA52, UBTF, DAP3, HIST1H2BL, SMARCA5, PABPC4, DDX18, EIF2B4, H1FX, BAZ1B, DDX21, RPL23, TTC37, PHF14, ESPL1, KIAA0020, HNRNPDL, CEBPZ, ALYREF, HNRNPR, NPM3, MYBBP1A, RPP38, TBL3, IGF2BP1, WDR3, POP1, EBNA1BP2, KRR1, SUPT16H, XRN2, DHX30, PDCD11, RBM34, RRP1B, MRPS27, PHF8, METAP1, FAM120A, RRP12, LARP1, RPL13A, GTPBP4, C3orf17, RPL36, SPATS2L, SERBP1, NOC2L, FBXL6, GNL3, AATF, MRPL46, TRUB2, STAU2, C19orf53, UHRF1, GNL2, PKN3, HP1BP3, RRP15, FCF1, UTP18, MRPS2, MRTO4, HERC5, DDX47, MRPL27, NIP7, RTCB, ESF1, MRPS33, DHX29, GNL3L, GTPBP2, FOCAD, FAM120C, CDCA4, RBM28, SRBD1, NAT10, BRIX1, LYAR, DDX27, TSR1, RIOK2, NKRF, MEPCE, BCCIP, PNO1, DHX33, DDX24, AVEN, REXO4, THAP11, CBX8, USP36, MRPS35, EEFSEC, MRPS14, NOC3L, MRPS25, DDX31, YTHDC2, C12orf43, MRPS15, MRPS9, MRPL38, NBEAL1, NOL6, KRI1, SPATS2, DDX50, DDX54, CCDC86, C14orf169, MUS81, PRR3, TRMT1L, C18orf21, UTP23, GLYR1, MINA, LTV1, SAMD1, ZNF622, TADA1, KRBA2, WDR36, RPP25L, EME1, CENPV, POC1B, CCDC137, GAN, CRY1, UBQLN2, MACROD1, TRIM29, MCM2, CDC5L, SHC1, RC3H1, CRBN, NCL, CYLD, TRIM25, CENPW, BRCA1, LMNA, MTF1, RNF169, HDAC6 | SLC36A4 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for HNRNPU_SLC36A4 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for HNRNPU_SLC36A4 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |