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Fusion gene ID: 16569 |
FusionGeneSummary for HNRNPD_TMEM67 |
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Fusion gene information | Fusion gene name: HNRNPD_TMEM67 | Fusion gene ID: 16569 | Hgene | Tgene | Gene symbol | HNRNPD | TMEM67 | Gene ID | 3184 | 91147 |
Gene name | heterogeneous nuclear ribonucleoprotein D | transmembrane protein 67 | |
Synonyms | AUF1|AUF1A|HNRPD|P37|hnRNPD0 | JBTS6|MECKELIN|MKS3|NPHP11|TNEM67 | |
Cytomap | 4q21.22 | 8q22.1 | |
Type of gene | protein-coding | protein-coding | |
Description | heterogeneous nuclear ribonucleoprotein D0ARE-binding protein AUFI, type AAU-rich element RNA binding protein 1, 37kDahnRNP D0 | meckelinmeckel syndrome type 3 protein | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q14103 | Q5HYA8 | |
Ensembl transtripts involved in fusion gene | ENST00000313899, ENST00000353341, ENST00000543098, ENST00000352301, ENST00000508119, ENST00000541060, | ENST00000453321, ENST00000409623, ENST00000425545, | |
Fusion gene scores | * DoF score | 8 X 7 X 4=224 | 4 X 4 X 4=64 |
# samples | 8 | 4 | |
** MAII score | log2(8/224*10)=-1.48542682717024 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/64*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: HNRNPD [Title/Abstract] AND TMEM67 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BG988244 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3UTR | ENST00000313899 | ENST00000453321 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-3UTR | ENST00000313899 | ENST00000409623 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-intron | ENST00000313899 | ENST00000425545 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-3UTR | ENST00000353341 | ENST00000453321 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-3UTR | ENST00000353341 | ENST00000409623 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-intron | ENST00000353341 | ENST00000425545 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-3UTR | ENST00000543098 | ENST00000453321 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-3UTR | ENST00000543098 | ENST00000409623 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-intron | ENST00000543098 | ENST00000425545 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-3UTR | ENST00000352301 | ENST00000453321 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-3UTR | ENST00000352301 | ENST00000409623 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-intron | ENST00000352301 | ENST00000425545 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-3UTR | ENST00000508119 | ENST00000453321 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-3UTR | ENST00000508119 | ENST00000409623 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-intron | ENST00000508119 | ENST00000425545 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-3UTR | ENST00000541060 | ENST00000453321 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-3UTR | ENST00000541060 | ENST00000409623 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
intron-intron | ENST00000541060 | ENST00000425545 | HNRNPD | chr4 | 83275470 | + | TMEM67 | chr8 | 94828925 | + |
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FusionProtFeatures for HNRNPD_TMEM67 |
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Hgene | Tgene |
HNRNPD | TMEM67 |
Required for ciliary structure and function. Part of thetectonic-like complex which is required for tissue-specificciliogenesis and may regulate ciliary membrane composition (Bysimilarity). Involved in centrosome migration to the apical cellsurface during early ciliogenesis. Involved in the regulation ofcilia length and appropriate number through the control ofcentrosome duplication. Required for cell branching morphology.Essential for endoplasmic reticulum-associated degradation (ERAD)of surfactant protein C (SFTPC). {ECO:0000250,ECO:0000269|PubMed:17185389, ECO:0000269|PubMed:19515853,ECO:0000269|PubMed:19596800, ECO:0000269|PubMed:19815549}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for HNRNPD_TMEM67 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for HNRNPD_TMEM67 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for HNRNPD_TMEM67 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | HNRNPD | Q14103 | DB11638 | Artenimol | Heterogeneous nuclear ribonucleoprotein D0 | small molecule | approved|investigational |
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RelatedDiseases for HNRNPD_TMEM67 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | TMEM67 | C1846357 | Meckel syndrome type 3 | 7 | CTD_human;UNIPROT |
Tgene | TMEM67 | C1857662 | COACH syndrome | 5 | CTD_human;ORPHANET;UNIPROT |
Tgene | TMEM67 | C1853153 | JOUBERT SYNDROME 6 | 4 | CTD_human;UNIPROT |
Tgene | TMEM67 | C0023890 | Liver Cirrhosis | 1 | CTD_human |
Tgene | TMEM67 | C0752166 | Bardet-Biedl Syndrome | 1 | CTD_human |
Tgene | TMEM67 | C1691228 | Cystic Kidney Diseases | 1 | CTD_human |
Tgene | TMEM67 | C3150796 | NEPHRONOPHTHISIS 11 | 1 | CTD_human;UNIPROT |