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Fusion gene ID: 1635 |
FusionGeneSummary for AMPH_SPANXA2-OT1 |
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Fusion gene information | Fusion gene name: AMPH_SPANXA2-OT1 | Fusion gene ID: 1635 | Hgene | Tgene | Gene symbol | AMPH | SPANXA2-OT1 | Gene ID | 273 | 619455 |
Gene name | amphiphysin | SPANXA2 overlapping transcript 1 | |
Synonyms | AMPH1 | CXorf18 | |
Cytomap | 7p14.1 | Xq27.2 | |
Type of gene | protein-coding | ncRNA | |
Description | amphiphysinamphiphysin (Stiff-Mann syndrome with breast cancer 128kD autoantigen)amphiphysin I | SPANXA2 overlapping transcript 1 (non-protein coding) | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | P49418 | ||
Ensembl transtripts involved in fusion gene | ENST00000325590, ENST00000356264, ENST00000428293, ENST00000471913, | ENST00000421554, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 1 X 1 X 1=1 |
# samples | 1 | 1 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: AMPH [Title/Abstract] AND SPANXA2-OT1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AW873264 | AMPH | chr7 | 38441967 | - | SPANXA2-OT1 | chrX | 140698953 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000325590 | ENST00000421554 | AMPH | chr7 | 38441967 | - | SPANXA2-OT1 | chrX | 140698953 | + |
intron-intron | ENST00000356264 | ENST00000421554 | AMPH | chr7 | 38441967 | - | SPANXA2-OT1 | chrX | 140698953 | + |
intron-intron | ENST00000428293 | ENST00000421554 | AMPH | chr7 | 38441967 | - | SPANXA2-OT1 | chrX | 140698953 | + |
intron-intron | ENST00000471913 | ENST00000421554 | AMPH | chr7 | 38441967 | - | SPANXA2-OT1 | chrX | 140698953 | + |
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FusionProtFeatures for AMPH_SPANXA2-OT1 |
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Hgene | Tgene |
AMPH | SPANXA2-OT1 |
May participate in mechanisms of regulated exocytosis insynapses and certain endocrine cell types. May control theproperties of the membrane associated cytoskeleton. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for AMPH_SPANXA2-OT1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for AMPH_SPANXA2-OT1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for AMPH_SPANXA2-OT1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for AMPH_SPANXA2-OT1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |