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Fusion gene ID: 16312 |
FusionGeneSummary for HKDC1_SUPV3L1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: HKDC1_SUPV3L1 | Fusion gene ID: 16312 | Hgene | Tgene | Gene symbol | HKDC1 | SUPV3L1 | Gene ID | 80201 | 6832 |
| Gene name | hexokinase domain containing 1 | Suv3 like RNA helicase | |
| Synonyms | - | SUV3 | |
| Cytomap | 10q22.1 | 10q22.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | putative hexokinase HKDC1hexokinase domain-containing protein 1 | ATP-dependent RNA helicase SUPV3L1, mitochondrialSUV3-like helicaseSUV3-like protein 1suppressor of var1, 3-like 1suppressor of var1, 3-like 1(SUV3) | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | Q2TB90 | Q8IYB8 | |
| Ensembl transtripts involved in fusion gene | ENST00000395086, ENST00000354624, ENST00000488706, | ENST00000359655, ENST00000483572, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 4 X 4 X 3=48 |
| # samples | 1 | 4 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(4/48*10)=-0.263034405833794 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: HKDC1 [Title/Abstract] AND SUPV3L1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | Kinase involved fusion gene, inframe and retained kinase domain. | ||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | SUPV3L1 | GO:0000962 | positive regulation of mitochondrial RNA catabolic process | 19509288 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | STAD | TCGA-VQ-AA6D-01A | HKDC1 | chr10 | 71010408 | + | SUPV3L1 | chr10 | 70951411 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000395086 | ENST00000359655 | HKDC1 | chr10 | 71010408 | + | SUPV3L1 | chr10 | 70951411 | + |
| 5CDS-3UTR | ENST00000395086 | ENST00000483572 | HKDC1 | chr10 | 71010408 | + | SUPV3L1 | chr10 | 70951411 | + |
| In-frame | ENST00000354624 | ENST00000359655 | HKDC1 | chr10 | 71010408 | + | SUPV3L1 | chr10 | 70951411 | + |
| 5CDS-3UTR | ENST00000354624 | ENST00000483572 | HKDC1 | chr10 | 71010408 | + | SUPV3L1 | chr10 | 70951411 | + |
| intron-3CDS | ENST00000488706 | ENST00000359655 | HKDC1 | chr10 | 71010408 | + | SUPV3L1 | chr10 | 70951411 | + |
| intron-3UTR | ENST00000488706 | ENST00000483572 | HKDC1 | chr10 | 71010408 | + | SUPV3L1 | chr10 | 70951411 | + |
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FusionProtFeatures for HKDC1_SUPV3L1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| HKDC1 | SUPV3L1 |
| Major helicase player in mitochondrial RNA metabolism.Component of the mitochondrial degradosome (mtEXO) complex, thatdegrades 3' overhang double-stranded RNA with a 3'-to-5'directionality in an ATP-dependent manner. ATPase and ATP-dependent multisubstrate helicase, able to unwind double-stranded(ds) DNA and RNA, and RNA/DNA heteroduplexes in the 5'-to-3'direction. Plays a role in the RNA surveillance system inmitochondria; regulates the stability of mature mRNAs, the removalof aberrantly formed mRNAs and the rapid degradation of non codingprocessing intermediates. Also implicated in recombination andchromatin maintenance pathways. May protect cells from apoptosis.Associates with mitochondrial DNA. {ECO:0000269|PubMed:12466530,ECO:0000269|PubMed:15096047, ECO:0000269|PubMed:17352692,ECO:0000269|PubMed:17961633, ECO:0000269|PubMed:18678873,ECO:0000269|PubMed:19509288, ECO:0000269|PubMed:19864255}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000354624 | + | 12 | 18 | 16_458 | 612 | 918 | Domain | Hexokinase 1 |
| Hgene | HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000395086 | + | 12 | 17 | 16_458 | 612 | 807 | Domain | Hexokinase 1 |
| Hgene | HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000354624 | + | 12 | 18 | 532_537 | 612 | 918 | Nucleotide binding | ATP |
| Hgene | HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000354624 | + | 12 | 18 | 84_89 | 612 | 918 | Nucleotide binding | ATP |
| Hgene | HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000395086 | + | 12 | 17 | 532_537 | 612 | 807 | Nucleotide binding | ATP |
| Hgene | HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000395086 | + | 12 | 17 | 84_89 | 612 | 807 | Nucleotide binding | ATP |
| Hgene | HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000354624 | + | 12 | 18 | 149_175 | 612 | 918 | Region | Glucose-binding |
| Hgene | HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000354624 | + | 12 | 18 | 208_447 | 612 | 918 | Region | Hexokinase large subdomain 1 |
| Hgene | HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000354624 | + | 12 | 18 | 73_207 | 612 | 918 | Region | Hexokinase small subdomain 1 |
| Hgene | HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000395086 | + | 12 | 17 | 149_175 | 612 | 807 | Region | Glucose-binding |
| Hgene | HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000395086 | + | 12 | 17 | 208_447 | 612 | 807 | Region | Hexokinase large subdomain 1 |
| Hgene | HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000395086 | + | 12 | 17 | 73_207 | 612 | 807 | Region | Hexokinase small subdomain 1 |
| Tgene | >SUPV3L1 | chr10:71010408 | chr10:70951411 | ENST00000359655 | + | 4 | 15 | 353_518 | 247 | 787 | Domain | Helicase C-terminal |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000354624 | + | 12 | 18 | 464_905 | 612 | 918 | Domain | Hexokinase 2 |
| Hgene | >HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000395086 | + | 12 | 17 | 464_905 | 612 | 807 | Domain | Hexokinase 2 |
| Hgene | >HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000354624 | + | 12 | 18 | 521_654 | 612 | 918 | Region | Hexokinase small subdomain 2 |
| Hgene | >HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000354624 | + | 12 | 18 | 596_622 | 612 | 918 | Region | Glucose-binding |
| Hgene | >HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000354624 | + | 12 | 18 | 655_894 | 612 | 918 | Region | Hexokinase large subdomain 2 |
| Hgene | >HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000395086 | + | 12 | 17 | 521_654 | 612 | 807 | Region | Hexokinase small subdomain 2 |
| Hgene | >HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000395086 | + | 12 | 17 | 596_622 | 612 | 807 | Region | Glucose-binding |
| Hgene | >HKDC1 | chr10:71010408 | chr10:70951411 | ENST00000395086 | + | 12 | 17 | 655_894 | 612 | 807 | Region | Hexokinase large subdomain 2 |
| Tgene | SUPV3L1 | chr10:71010408 | chr10:70951411 | ENST00000359655 | + | 4 | 15 | 194_334 | 247 | 787 | Domain | Note=Helicase ATP-binding |
| Tgene | SUPV3L1 | chr10:71010408 | chr10:70951411 | ENST00000359655 | + | 4 | 15 | 207_214 | 247 | 787 | Nucleotide binding | ATP |
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FusionGeneSequence for HKDC1_SUPV3L1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for HKDC1_SUPV3L1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| HKDC1 | NOS2, KRAS, HK1, HK3 | SUPV3L1 | ICT1, ELAVL1, CUL3, LZTS2, ZMAT3, HNRNPDL, HNRNPA1, NTRK1, CDC5L, PNPT1, ELAVL2, MRPS11, RBM3, MRPS34, USP9X, RBM42, HNRNPF, ZNF703, WASF3, BHLHA15 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| Tgene | SUPV3L1 | chr10:71010408 | chr10:70951411 | ENST00000359655 | + | 4 | 15 | 650_786 | 247 | 787 | LAMTOR5%2C important for protein stability |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for HKDC1_SUPV3L1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for HKDC1_SUPV3L1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | SUPV3L1 | C0002170 | Alopecia | 1 | CTD_human |
| Tgene | SUPV3L1 | C0020757 | Ichthyoses | 1 | CTD_human |
| Tgene | SUPV3L1 | C0037268 | Skin Abnormalities | 1 | CTD_human |
| Tgene | SUPV3L1 | C0872084 | Sarcopenia | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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