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Fusion gene ID: 1616 |
FusionGeneSummary for AMMECR1_PLA2G12B |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: AMMECR1_PLA2G12B | Fusion gene ID: 1616 | Hgene | Tgene | Gene symbol | AMMECR1 | PLA2G12B | Gene ID | 9949 | 84647 |
| Gene name | Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 | phospholipase A2 group XIIB | |
| Synonyms | AMMERC1|MFHIEN | FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB | |
| Cytomap | Xq23 | 10q22.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | AMME syndrome candidate gene 1 proteinAlport syndrome mental retardation midface hypoplasia and elliptocytosis chromosomal region protein 1 | group XIIB secretory phospholipase A2-like proteingroup XIII secreted phospholipase A2phospholipase A2, group XIII | |
| Modification date | 20180519 | 20180519 | |
| UniProtAcc | Q9Y4X0 | Q9BX93 | |
| Ensembl transtripts involved in fusion gene | ENST00000262844, ENST00000372059, ENST00000372057, ENST00000496695, | ENST00000373032, | |
| Fusion gene scores | * DoF score | 3 X 3 X 2=18 | 1 X 1 X 1=1 |
| # samples | 3 | 1 | |
| ** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(1/1*10)=3.32192809488736 | |
| Context | PubMed: AMMECR1 [Title/Abstract] AND PLA2G12B [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LUAD | TCGA-MN-A4N5-01A | AMMECR1 | chrX | 109507717 | - | PLA2G12B | chr10 | 74702498 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000262844 | ENST00000373032 | AMMECR1 | chrX | 109507717 | - | PLA2G12B | chr10 | 74702498 | - |
| intron-3CDS | ENST00000372059 | ENST00000373032 | AMMECR1 | chrX | 109507717 | - | PLA2G12B | chr10 | 74702498 | - |
| In-frame | ENST00000372057 | ENST00000373032 | AMMECR1 | chrX | 109507717 | - | PLA2G12B | chr10 | 74702498 | - |
| intron-3CDS | ENST00000496695 | ENST00000373032 | AMMECR1 | chrX | 109507717 | - | PLA2G12B | chr10 | 74702498 | - |
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FusionProtFeatures for AMMECR1_PLA2G12B |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| AMMECR1 | PLA2G12B |
| Not known; does not seem to have catalytic activity. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for AMMECR1_PLA2G12B |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_AMMECR1_ENST00000372057_chrX_109507717_-_PLA2G12B_ENST00000373032_chr10_74702498_-_197aa MVVSAEMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKIGRDKRLRGCIGTFSAMNLHSGLREYTLTRKGTNAQTWLQAPRAQWLR LLFPGSQGTRKYGLGHSSNDKVLQPAGCLLXHLRCQQISLXCKIPMVSPLDLLXPXAESGLCLQSGSSLXFPGXHCVQHRVDLGLPPLYE |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_AMMECR1_ENST00000372057_chrX_109507717_-_PLA2G12B_ENST00000373032_chr10_74702498_-_592nt ATGGTGGTGTCAGCAGAGATGTGCTGCTTTTGCTTCGATGTGCTCTACTGTCACCTGTATGGATACCAGCAGCCCCGGACCCCCCGATTC ACCAACGAGCCCTACCCACTGTTTGTAACATGGAAGATTGGTCGAGACAAAAGATTACGTGGATGCATAGGTACTTTTTCTGCCATGAAT TTGCATTCAGGACTCAGGGAGTACACACTTACCAGGAAAGGCACCAATGCCCAGACCTGGCTACAAGCCCCAAGAGCCCAATGGCTGCGG CTCCTATTTCCTGGGTCTCAAGGTACCAGAAAGTATGGACTTGGGCATTCCAGCAATGACAAAGTGCTGCAACCAGCTGGATGTCTGTTA TGACACTTGCGGTGCCAACAAATATCGCTGTGATGCAAAATTCCGATGGTGTCTCCACTCGATCTGCTCTGACCTTAAGCGGAGTCTGGG CTTTGTCTCCAAAGTGGAAGCAGCCTGTGATTCCCTGGTTGACACTGTGTTCAACACCGTGTGGACCTTGGGCTGCCGCCCCTTTATGAA |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_AMMECR1_ENST00000372057_chrX_109507717_-_PLA2G12B_ENST00000373032_chr10_74702498_-_1676nt CTCTTTCTCTGGGCTAATCGTTTAGAGGACAGTCGCTCCTGCCAACCTAATCCCATGAGCCTGACTACCTTGCCGGGCCACAGGCTCAAA GAAGCAGTGTGGCTGCCAGCACCCTCACGGTAAGGGGCACGGAGGCACCAGGCAGTCTGGCAGGATGAGAGACATCCTGGGGGTGGTCTG AGTTTGGATGTGGGCTGAGAAGACAAAGCAGGGGGCTTTCGGGGGACAAGATTTTCCAAACATCTTATTCTTAGGATCATCACTTCCTAA TCTGATGCAACTGACTCGGCAGGCATTCGGGAGCCTGTAAGCTCCATTTTCCTGTTCCAAATTCTTCTGCACCTCACCATGAGTCCTCAC CTTGACCCTAATCAACTTGGGATTCTCCTCAAAGTACTTAGAAAGGAAAAGGAAGACGGTGACTACCCTGACATGATGGCCACCCACCCG AGCTCCAGGTATGAAGCCTGCTCCTCTGGAATTACTCTAGGGCTGCGGCGGCGGCGGCGGGGGGATCGCCCTGTCGCCACCTCCGAGCTG CGGAGTGGGGACCCTACTTTCTACCCCGGCCGCCGCCACCTCTTCCTCACCCTCCTCATCGTCCGCCGCCTCGTCCTCATCGCCGGGCTC CCGGAAGATGGTGGTGTCAGCAGAGATGTGCTGCTTTTGCTTCGATGTGCTCTACTGTCACCTGTATGGATACCAGCAGCCCCGGACCCC CCGATTCACCAACGAGCCCTACCCACTGTTTGTAACATGGAAGATTGGTCGAGACAAAAGATTACGTGGATGCATAGGTACTTTTTCTGC CATGAATTTGCATTCAGGACTCAGGGAGTACACACTTACCAGGAAAGGCACCAATGCCCAGACCTGGCTACAAGCCCCAAGAGCCCAATG GCTGCGGCTCCTATTTCCTGGGTCTCAAGGTACCAGAAAGTATGGACTTGGGCATTCCAGCAATGACAAAGTGCTGCAACCAGCTGGATG TCTGTTATGACACTTGCGGTGCCAACAAATATCGCTGTGATGCAAAATTCCGATGGTGTCTCCACTCGATCTGCTCTGACCTTAAGCGGA GTCTGGGCTTTGTCTCCAAAGTGGAAGCAGCCTGTGATTCCCTGGTTGACACTGTGTTCAACACCGTGTGGACCTTGGGCTGCCGCCCCT TTATGAATAGTCAGCGGGCAGCTTGCATCTGTGCAGAGGAGGAGAAGGAAGAGTTATGAGGAAGAAGTGATTCCTTCCTGGTTTTGAGTG ACACCACAGCTGTCAGCCTTCAAGATGTCAAGTCTTCGAGTCAGCGTGACTCATTCATTCTTCCAACAGTTTGGACACCACAAAGCAGGA GAAAGGGAACATTTTTCTACAGCTGGAAAGTGAGTCCTATCCTTTGAGGAAATTTGAAAAAAGACATGGAGTGGTTTGAAAGCTACTCTT CATTTAAGACTGCTCTCCCCAACCAAGACACATTTGCCTGGAAATTCAGTTCTTAGCTTAAAGACTAAAATGCAAGCAAACCCTGCAATT CCTGGACCTGATAGTTATATTCATGAGTGAAATTGTGGGGAGTCCAGCCATTTGGGAGGCAATGACTTTCTGCTGGCCCATGTTTCAGTT |
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FusionGenePPI for AMMECR1_PLA2G12B |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| AMMECR1 | ELAVL1, CALCOCO2, RBPMS, ADAMTSL4, TSEN54, CLP1, PPIL4, GFER, ZNF703, HNRNPF, ZNF507 | PLA2G12B | ADAMTS1, CCPG1, GLG1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for AMMECR1_PLA2G12B |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for AMMECR1_PLA2G12B |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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