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Fusion gene ID: 16107 |
FusionGeneSummary for HERC3_NGLY1 |
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Fusion gene information | Fusion gene name: HERC3_NGLY1 | Fusion gene ID: 16107 | Hgene | Tgene | Gene symbol | HERC3 | NGLY1 | Gene ID | 8916 | 55768 |
Gene name | HECT and RLD domain containing E3 ubiquitin protein ligase 3 | N-glycanase 1 | |
Synonyms | - | CDDG|CDG1V|PNG1|PNGase | |
Cytomap | 4q22.1 | 3p24.2 | |
Type of gene | protein-coding | protein-coding | |
Description | probable E3 ubiquitin-protein ligase HERC3HECT domain and RCC1-like domain-containing protein 3HECT-type E3 ubiquitin transferase HERC3hect domain and RLD 3 | peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidasehPNGasepeptide:N-glycanase | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | Q15034 | Q96IV0 | |
Ensembl transtripts involved in fusion gene | ENST00000402738, ENST00000407637, ENST00000601319, ENST00000264345, ENST00000543130, | ENST00000428257, ENST00000280700, ENST00000396649, ENST00000417874, ENST00000467224, ENST00000422724, | |
Fusion gene scores | * DoF score | 4 X 4 X 2=32 | 2 X 2 X 2=8 |
# samples | 4 | 2 | |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: HERC3 [Title/Abstract] AND NGLY1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | NGLY1 | GO:0006516 | glycoprotein catabolic process | 15358861 |
Tgene | NGLY1 | GO:0006517 | protein deglycosylation | 28826503 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AU135833 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000402738 | ENST00000428257 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000402738 | ENST00000280700 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000402738 | ENST00000396649 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000402738 | ENST00000417874 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-intron | ENST00000402738 | ENST00000467224 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-5UTR | ENST00000402738 | ENST00000422724 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000407637 | ENST00000428257 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000407637 | ENST00000280700 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000407637 | ENST00000396649 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000407637 | ENST00000417874 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-intron | ENST00000407637 | ENST00000467224 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-5UTR | ENST00000407637 | ENST00000422724 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000601319 | ENST00000428257 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000601319 | ENST00000280700 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000601319 | ENST00000396649 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000601319 | ENST00000417874 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-intron | ENST00000601319 | ENST00000467224 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-5UTR | ENST00000601319 | ENST00000422724 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000264345 | ENST00000428257 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000264345 | ENST00000280700 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000264345 | ENST00000396649 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000264345 | ENST00000417874 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-intron | ENST00000264345 | ENST00000467224 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-5UTR | ENST00000264345 | ENST00000422724 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000543130 | ENST00000428257 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000543130 | ENST00000280700 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000543130 | ENST00000396649 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-3CDS | ENST00000543130 | ENST00000417874 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-intron | ENST00000543130 | ENST00000467224 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
intron-5UTR | ENST00000543130 | ENST00000422724 | HERC3 | chr4 | 89605999 | - | NGLY1 | chr3 | 25820156 | - |
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FusionProtFeatures for HERC3_NGLY1 |
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Hgene | Tgene |
HERC3 | NGLY1 |
E3 ubiquitin-protein ligase which accepts ubiquitin froman E2 ubiquitin-conjugating enzyme in the form of a thioester andthen directly transfers the ubiquitin to targeted substrates.{ECO:0000250}. | Specifically deglycosylates the denatured form of N-linked glycoproteins in the cytoplasm and assists theirproteasome-mediated degradation. Cleaves the beta-aspartyl-glucosamine (GlcNAc) of the glycan and the amide side chain ofAsn, converting Asn to Asp. Prefers proteins containing high-mannose over those bearing complex type oligosaccharides. Canrecognize misfolded proteins in the endoplasmic reticulum that areexported to the cytosol to be destroyed and deglycosylate them,while it has no activity toward native proteins. Deglycosylationis a prerequisite for subsequent proteasome-mediated degradationof some, but not all, misfolded glycoproteins.{ECO:0000269|PubMed:14749736, ECO:0000269|PubMed:15358861}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for HERC3_NGLY1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for HERC3_NGLY1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for HERC3_NGLY1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for HERC3_NGLY1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | HERC3 | C0023903 | Liver neoplasms | 1 | CTD_human |