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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 16107

FusionGeneSummary for HERC3_NGLY1

check button Fusion gene summary
Fusion gene informationFusion gene name: HERC3_NGLY1
Fusion gene ID: 16107
HgeneTgene
Gene symbol

HERC3

NGLY1

Gene ID

8916

55768

Gene nameHECT and RLD domain containing E3 ubiquitin protein ligase 3N-glycanase 1
Synonyms-CDDG|CDG1V|PNG1|PNGase
Cytomap

4q22.1

3p24.2

Type of geneprotein-codingprotein-coding
Descriptionprobable E3 ubiquitin-protein ligase HERC3HECT domain and RCC1-like domain-containing protein 3HECT-type E3 ubiquitin transferase HERC3hect domain and RLD 3peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidasehPNGasepeptide:N-glycanase
Modification date2018052220180523
UniProtAcc

Q15034

Q96IV0

Ensembl transtripts involved in fusion geneENST00000402738, ENST00000407637, 
ENST00000601319, ENST00000264345, 
ENST00000543130, 
ENST00000428257, 
ENST00000280700, ENST00000396649, 
ENST00000417874, ENST00000467224, 
ENST00000422724, 
Fusion gene scores* DoF score4 X 4 X 2=322 X 2 X 2=8
# samples 42
** MAII scorelog2(4/32*10)=0.321928094887362
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(2/8*10)=1.32192809488736
Context

PubMed: HERC3 [Title/Abstract] AND NGLY1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
TgeneNGLY1

GO:0006516

glycoprotein catabolic process

15358861

TgeneNGLY1

GO:0006517

protein deglycosylation

28826503


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1AU135833HERC3chr4

89605999

-NGLY1chr3

25820156

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-3CDSENST00000402738ENST00000428257HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000402738ENST00000280700HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000402738ENST00000396649HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000402738ENST00000417874HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-intronENST00000402738ENST00000467224HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-5UTRENST00000402738ENST00000422724HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000407637ENST00000428257HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000407637ENST00000280700HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000407637ENST00000396649HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000407637ENST00000417874HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-intronENST00000407637ENST00000467224HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-5UTRENST00000407637ENST00000422724HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000601319ENST00000428257HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000601319ENST00000280700HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000601319ENST00000396649HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000601319ENST00000417874HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-intronENST00000601319ENST00000467224HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-5UTRENST00000601319ENST00000422724HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000264345ENST00000428257HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000264345ENST00000280700HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000264345ENST00000396649HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000264345ENST00000417874HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-intronENST00000264345ENST00000467224HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-5UTRENST00000264345ENST00000422724HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000543130ENST00000428257HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000543130ENST00000280700HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000543130ENST00000396649HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-3CDSENST00000543130ENST00000417874HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-intronENST00000543130ENST00000467224HERC3chr4

89605999

-NGLY1chr3

25820156

-
intron-5UTRENST00000543130ENST00000422724HERC3chr4

89605999

-NGLY1chr3

25820156

-

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FusionProtFeatures for HERC3_NGLY1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
HERC3

Q15034

NGLY1

Q96IV0

E3 ubiquitin-protein ligase which accepts ubiquitin froman E2 ubiquitin-conjugating enzyme in the form of a thioester andthen directly transfers the ubiquitin to targeted substrates.{ECO:0000250}. Specifically deglycosylates the denatured form of N-linked glycoproteins in the cytoplasm and assists theirproteasome-mediated degradation. Cleaves the beta-aspartyl-glucosamine (GlcNAc) of the glycan and the amide side chain ofAsn, converting Asn to Asp. Prefers proteins containing high-mannose over those bearing complex type oligosaccharides. Canrecognize misfolded proteins in the endoplasmic reticulum that areexported to the cytosol to be destroyed and deglycosylate them,while it has no activity toward native proteins. Deglycosylationis a prerequisite for subsequent proteasome-mediated degradationof some, but not all, misfolded glycoproteins.{ECO:0000269|PubMed:14749736, ECO:0000269|PubMed:15358861}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for HERC3_NGLY1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for HERC3_NGLY1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for HERC3_NGLY1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for HERC3_NGLY1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneHERC3C0023903Liver neoplasms1CTD_human