|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 15842 |
FusionGeneSummary for HAUS2_SNAP23 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: HAUS2_SNAP23 | Fusion gene ID: 15842 | Hgene | Tgene | Gene symbol | HAUS2 | SNAP23 | Gene ID | 55142 | 8773 |
| Gene name | HAUS augmin like complex subunit 2 | synaptosome associated protein 23 | |
| Synonyms | C15orf25|CEP27|HsT17025 | HsT17016|SNAP-23|SNAP23A|SNAP23B | |
| Cytomap | 15q15.2 | 15q15.1-q15.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | HAUS augmin-like complex subunit 2centrosomal protein 27kDacentrosomal protein of 27 kDa | synaptosomal-associated protein 23synaptosomal-associated protein, 23kDsynaptosomal-associated protein, 23kDasynaptosome associated protein 23kDavesicle-membrane fusion protein SNAP-23 | |
| Modification date | 20180519 | 20180527 | |
| UniProtAcc | Q9NVX0 | O00161 | |
| Ensembl transtripts involved in fusion gene | ENST00000260372, ENST00000568876, ENST00000568846, | ENST00000249647, ENST00000566141, ENST00000564153, ENST00000349777, ENST00000567094, ENST00000397138, | |
| Fusion gene scores | * DoF score | 3 X 2 X 3=18 | 6 X 6 X 4=144 |
| # samples | 3 | 6 | |
| ** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(6/144*10)=-1.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: HAUS2 [Title/Abstract] AND SNAP23 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | LGG | TCGA-DU-7007-01A | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-intron | ENST00000260372 | ENST00000249647 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000260372 | ENST00000566141 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000260372 | ENST00000564153 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000260372 | ENST00000349777 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000260372 | ENST00000567094 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000260372 | ENST00000397138 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000568876 | ENST00000249647 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000568876 | ENST00000566141 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000568876 | ENST00000564153 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000568876 | ENST00000349777 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000568876 | ENST00000567094 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000568876 | ENST00000397138 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000568846 | ENST00000249647 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000568846 | ENST00000566141 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000568846 | ENST00000564153 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000568846 | ENST00000349777 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000568846 | ENST00000567094 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
| 5CDS-intron | ENST00000568846 | ENST00000397138 | HAUS2 | chr15 | 42841163 | + | SNAP23 | chr15 | 42837334 | + |
Top |
FusionProtFeatures for HAUS2_SNAP23 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| HAUS2 | SNAP23 |
| Contributes to mitotic spindle assembly, maintenance ofcentrosome integrity and completion of cytokinesis as part of theHAUS augmin-like complex. {ECO:0000269|PubMed:19369198,ECO:0000269|PubMed:19427217}. | Essential component of the high affinity receptor forthe general membrane fusion machinery and an important regulatorof transport vesicle docking and fusion. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for HAUS2_SNAP23 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for HAUS2_SNAP23 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| HAUS2 | FXYD6, MAPK6, HAUS6, SUPT6H, TRIM21, TRIM28, TUBA4A, TUBB4B, TUBB3, TUBG1, UBB, HAUS7, AMOT, ARMCX3, PRRC2C, SLIRP, HAUS4, SDE2, LINC00189, HAUS3, CAMK2D, HAUS1, CCDC88A, CEP170, CKAP5, TUBB, HSPA1A, EEF1A2, PCM1, RCN1, RCN2, DAP3, MTFR1L, MOGS, HDAC1, HDAC5, MRPS35, HNRNPU, HSPA2, HSPA5, HSPA8, HSPA9, IGF2BP1, IRS4, HAUS5, LRPPRC, LSM3, MCM7, MRPL38, MRPS22, MRPS24, MRPS27, PDCD6, PHKG2, PSMB1, RAVER1, RPL38, RPL5, RPLP0, RPS13, SMARCE1, SMG1, SRI, STOML2, NXF1, CCDC14, MED4, OFD1, KIAA0753, CEP162, CEP120, CEP152, SPICE1, CEP128, CEP89, CNTRL, NINL, POC5, SASS6, XPO1, STT3A, NEMF, SCAMP3, HEXIM1, TRIOBP, CEP131, KIF21B, FAF2, UQCRQ, CEP72, SQRDL, PDF, HAUS8, ACSF3, SYCE3 | SNAP23 | SNAPIN, ABI2, ABI3, SCGN, FXR2, NAPA, STX11, STX18, SNTG1, VAMP7, STXBP5, STX1A, STX2, STX3, STX4, VAMP2, VAMP3, VAMP8, STXBP3, STX5, STX1B, KIF5B, STX12, CFTR, SCAMP1, SCAMP2, ITSN1, STX6, NSF, MATR3, WASH2P, ELAVL1, CEP97, CCP110, SCFD1, ILF2, PSAP, C12orf57, UBQLN2, FAM3C, SRSF1, SYNCRIP, YES1, ANXA3, HNRNPAB, FN1, SNAP23, VAMP5, NAPB, ZDHHC17, CCDC8, ABCE1, STX7, STX19, KRAS, TMEM17, TMEM216, PTAR1, CDH1, DUSP22, STXBP6, CHMP2A, VAMP4, GJB7 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for HAUS2_SNAP23 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for HAUS2_SNAP23 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | SNAP23 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
| Tgene | SNAP23 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|