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Fusion gene ID: 15519 |
FusionGeneSummary for GSE1_METTL23 |
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Fusion gene information | Fusion gene name: GSE1_METTL23 | Fusion gene ID: 15519 | Hgene | Tgene | Gene symbol | GSE1 | METTL23 | Gene ID | 23199 | 124512 |
Gene name | Gse1 coiled-coil protein | methyltransferase like 23 | |
Synonyms | CRHSP24|KIAA0182 | C17orf95|MRT44 | |
Cytomap | 16q24.1 | 17q25.1 | |
Type of gene | protein-coding | protein-coding | |
Description | genetic suppressor element 1CTC-786C10.1Gse1 coiled-coil protein homolog | methyltransferase-like protein 23spike binding protein 1 | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q14687 | Q86XA0 | |
Ensembl transtripts involved in fusion gene | ENST00000405402, ENST00000253458, ENST00000393243, ENST00000471070, | ENST00000589977, ENST00000591571, ENST00000586738, ENST00000588783, ENST00000586752, ENST00000588302, ENST00000590964, ENST00000341249, ENST00000588822, ENST00000586200, | |
Fusion gene scores | * DoF score | 13 X 9 X 7=819 | 3 X 4 X 2=24 |
# samples | 13 | 4 | |
** MAII score | log2(13/819*10)=-2.65535182861255 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: GSE1 [Title/Abstract] AND METTL23 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-A7-A2KD-01A | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000405402 | ENST00000589977 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000405402 | ENST00000591571 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000405402 | ENST00000586738 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000405402 | ENST00000588783 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000405402 | ENST00000586752 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000405402 | ENST00000588302 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000405402 | ENST00000590964 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000405402 | ENST00000341249 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000405402 | ENST00000588822 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-intron | ENST00000405402 | ENST00000586200 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
Frame-shift | ENST00000253458 | ENST00000589977 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000253458 | ENST00000591571 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000253458 | ENST00000586738 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000253458 | ENST00000588783 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000253458 | ENST00000586752 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000253458 | ENST00000588302 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000253458 | ENST00000590964 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000253458 | ENST00000341249 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000253458 | ENST00000588822 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-intron | ENST00000253458 | ENST00000586200 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
Frame-shift | ENST00000393243 | ENST00000589977 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000393243 | ENST00000591571 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000393243 | ENST00000586738 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000393243 | ENST00000588783 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000393243 | ENST00000586752 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000393243 | ENST00000588302 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000393243 | ENST00000590964 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000393243 | ENST00000341249 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-5UTR | ENST00000393243 | ENST00000588822 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
5CDS-intron | ENST00000393243 | ENST00000586200 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-3CDS | ENST00000471070 | ENST00000589977 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000471070 | ENST00000591571 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000471070 | ENST00000586738 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000471070 | ENST00000588783 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000471070 | ENST00000586752 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000471070 | ENST00000588302 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000471070 | ENST00000590964 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000471070 | ENST00000341249 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-5UTR | ENST00000471070 | ENST00000588822 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
intron-intron | ENST00000471070 | ENST00000586200 | GSE1 | chr16 | 85647004 | + | METTL23 | chr17 | 74729060 | + |
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FusionProtFeatures for GSE1_METTL23 |
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Hgene | Tgene |
GSE1 | METTL23 |
Probable methyltransferase. {ECO:0000250}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for GSE1_METTL23 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for GSE1_METTL23 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
GSE1 | NUDT18, RBPMS, RCOR3, HDAC2, KDM1A, RBM48, XRCC6, NR2E1, CDC5L, CEP63, TNIK, ELAVL1, TCF3, FUS, HDAC1, MTA3, EXOSC6, DGCR6, RUNX1T1, GOLGA2, TRIP6, RALBP1, GSE1, C1orf94, TEKT4, C6orf165, SNAI1, HMG20B, FGF1, DOK4, NTRK1, SRPK2, NINL, MAPK3, HMG20A, TCF4, EYA2, LLGL2, HAO2, FAM136A, NR3C1, AR, TRIM25 | METTL23 | BCL2L1, TK1, BAG6, CASP14, CCT3, CSTA, DNAJA1, DNAJA2, DNAJB11, GANAB, HSP90B1, HSPA5, CCAR2, VCPKMT, PDIA6, S100A7, S100A9, SEP15, SERPINH1, TUBB2A, TUBB3, TUBB4A, TUBB6, UBB, UBC, UBL4A, UGGT1, UGGT2 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GSE1_METTL23 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GSE1_METTL23 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | METTL23 | C3714756 | Intellectual Disability | 1 | CTD_human |