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Fusion gene ID: 15518 |
FusionGeneSummary for GSE1_LBP |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: GSE1_LBP | Fusion gene ID: 15518 | Hgene | Tgene | Gene symbol | GSE1 | LBP | Gene ID | 23199 | 3929 |
| Gene name | Gse1 coiled-coil protein | lipopolysaccharide binding protein | |
| Synonyms | CRHSP24|KIAA0182 | BPIFD2 | |
| Cytomap | 16q24.1 | 20q11.23 | |
| Type of gene | protein-coding | protein-coding | |
| Description | genetic suppressor element 1CTC-786C10.1Gse1 coiled-coil protein homolog | lipopolysaccharide-binding proteinBPI fold containing family D, member 2LPS-binding protein | |
| Modification date | 20180519 | 20180519 | |
| UniProtAcc | Q14687 | P18428 | |
| Ensembl transtripts involved in fusion gene | ENST00000405402, ENST00000253458, ENST00000393243, ENST00000471070, | ENST00000217407, | |
| Fusion gene scores | * DoF score | 13 X 9 X 7=819 | 3 X 3 X 3=27 |
| # samples | 13 | 3 | |
| ** MAII score | log2(13/819*10)=-2.65535182861255 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/27*10)=0.15200309344505 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: GSE1 [Title/Abstract] AND LBP [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | LBP | GO:0015920 | lipopolysaccharide transport | 8985160 |
| Tgene | LBP | GO:0031663 | lipopolysaccharide-mediated signaling pathway | 8409400|11739189 |
| Tgene | LBP | GO:0032490 | detection of molecule of bacterial origin | 11528597 |
| Tgene | LBP | GO:0032496 | response to lipopolysaccharide | 8409400|11739189 |
| Tgene | LBP | GO:0032720 | negative regulation of tumor necrosis factor production | 11739189 |
| Tgene | LBP | GO:0032755 | positive regulation of interleukin-6 production | 8409400 |
| Tgene | LBP | GO:0032757 | positive regulation of interleukin-8 production | 8409400 |
| Tgene | LBP | GO:0032760 | positive regulation of tumor necrosis factor production | 8409400|12594207 |
| Tgene | LBP | GO:0033036 | macromolecule localization | 15294986 |
| Tgene | LBP | GO:0034145 | positive regulation of toll-like receptor 4 signaling pathway | 11528597 |
| Tgene | LBP | GO:0043032 | positive regulation of macrophage activation | 8409400 |
| Tgene | LBP | GO:0045919 | positive regulation of cytolysis | 15294986 |
| Tgene | LBP | GO:0050829 | defense response to Gram-negative bacterium | 11528597 |
| Tgene | LBP | GO:0050830 | defense response to Gram-positive bacterium | 12932360 |
| Tgene | LBP | GO:0071222 | cellular response to lipopolysaccharide | 12594207 |
| Tgene | LBP | GO:0071223 | cellular response to lipoteichoic acid | 12594207 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | LD | SARC | TCGA-X6-A8C7-01A | GSE1 | chr16 | 85205413 | + | LBP | chr20 | 37005267 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| intron-3CDS | ENST00000405402 | ENST00000217407 | GSE1 | chr16 | 85205413 | + | LBP | chr20 | 37005267 | + |
| intron-3CDS | ENST00000253458 | ENST00000217407 | GSE1 | chr16 | 85205413 | + | LBP | chr20 | 37005267 | + |
| intron-3CDS | ENST00000393243 | ENST00000217407 | GSE1 | chr16 | 85205413 | + | LBP | chr20 | 37005267 | + |
| intron-3CDS | ENST00000471070 | ENST00000217407 | GSE1 | chr16 | 85205413 | + | LBP | chr20 | 37005267 | + |
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FusionProtFeatures for GSE1_LBP |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| GSE1 | LBP |
| Plays a role in the innate immune response. Binds to thelipid A moiety of bacterial lipopolysaccharides (LPS), aglycolipid present in the outer membrane of all Gram-negativebacteria (PubMed:7517398, PubMed:24120359). Acts as an affinityenhancer for CD14, facilitating its association with LPS. Promotesthe release of cytokines in response to bacteriallipopolysaccharide (PubMed:7517398, PubMed:24120359).{ECO:0000269|PubMed:1698311, ECO:0000269|PubMed:20133493,ECO:0000269|PubMed:24120359, ECO:0000269|PubMed:7517398,ECO:0000305|PubMed:17481951}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for GSE1_LBP |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for GSE1_LBP |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| GSE1 | NUDT18, RBPMS, RCOR3, HDAC2, KDM1A, RBM48, XRCC6, NR2E1, CDC5L, CEP63, TNIK, ELAVL1, TCF3, FUS, HDAC1, MTA3, EXOSC6, DGCR6, RUNX1T1, GOLGA2, TRIP6, RALBP1, GSE1, C1orf94, TEKT4, C6orf165, SNAI1, HMG20B, FGF1, DOK4, NTRK1, SRPK2, NINL, MAPK3, HMG20A, TCF4, EYA2, LLGL2, HAO2, FAM136A, NR3C1, AR, TRIM25 | LBP | CFHR1, APOA1, CD14, CBFA2T2, C4BPA, FTH1, BAG6, BST1, HSPB1, SMAD3, PSMA3, SETD1A, PRDX4, TRA2A, PYCRL, TSC22D4 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GSE1_LBP |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GSE1_LBP |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | LBP | C0023893 | Liver Cirrhosis, Experimental | 2 | CTD_human |
| Tgene | LBP | C0001969 | Alcoholic Intoxication | 1 | PSYGENET |
| Tgene | LBP | C0026766 | Multiple Organ Failure | 1 | CTD_human |
| Tgene | LBP | C0028754 | Obesity | 1 | CTD_human |
| Tgene | LBP | C0043094 | Weight Gain | 1 | CTD_human |
| Tgene | LBP | C0243026 | Sepsis | 1 | CTD_human |
| Tgene | LBP | C0524620 | Metabolic Syndrome X | 1 | CTD_human |
| Tgene | LBP | C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human |
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