FusionGDB Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
leaf

FusionGeneSummary

leaf

FusionProtFeature

leaf

FusionGeneSequence

leaf

FusionGenePPI

leaf

RelatedDrugs

leaf

RelatedDiseases

Fusion gene ID: 15500

FusionGeneSummary for GRTP1_SPATC1L

check button Fusion gene summary
Fusion gene informationFusion gene name: GRTP1_SPATC1L
Fusion gene ID: 15500
HgeneTgene
Gene symbol

GRTP1

SPATC1L

Gene ID

79774

84221

Gene namegrowth hormone regulated TBC protein 1spermatogenesis and centriole associated 1 like
SynonymsTBC1D6C21orf56
Cytomap

13q34

21q22.3

Type of geneprotein-codingprotein-coding
Descriptiongrowth hormone-regulated TBC protein 1TBC1 domain family member 6speriolin-like proteinspermatogenesis and centriole-associated protein 1-like protein
Modification date2018052320180523
UniProtAcc

Q5TC63

Q9H0A9

Ensembl transtripts involved in fusion geneENST00000375431, ENST00000326039, 
ENST00000375430, ENST00000476439, 
ENST00000330205, ENST00000291672, 
Fusion gene scores* DoF score5 X 4 X 4=803 X 2 X 2=12
# samples 53
** MAII scorelog2(5/80*10)=-0.678071905112638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(3/12*10)=1.32192809488736
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: GRTP1 [Title/Abstract] AND SPATC1L [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDSARCTCGA-IF-A4AK-01AGRTP1chr13

114009638

-SPATC1Lchr21

47581981

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000375431ENST00000330205GRTP1chr13

114009638

-SPATC1Lchr21

47581981

-
In-frameENST00000375431ENST00000291672GRTP1chr13

114009638

-SPATC1Lchr21

47581981

-
Frame-shiftENST00000326039ENST00000330205GRTP1chr13

114009638

-SPATC1Lchr21

47581981

-
Frame-shiftENST00000326039ENST00000291672GRTP1chr13

114009638

-SPATC1Lchr21

47581981

-
In-frameENST00000375430ENST00000330205GRTP1chr13

114009638

-SPATC1Lchr21

47581981

-
In-frameENST00000375430ENST00000291672GRTP1chr13

114009638

-SPATC1Lchr21

47581981

-
intron-3CDSENST00000476439ENST00000330205GRTP1chr13

114009638

-SPATC1Lchr21

47581981

-
intron-3CDSENST00000476439ENST00000291672GRTP1chr13

114009638

-SPATC1Lchr21

47581981

-

Top

FusionProtFeatures for GRTP1_SPATC1L


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GRTP1

Q5TC63

SPATC1L

Q9H0A9

May act as a GTPase-activating protein for Rab familyprotein(s).

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneSPATC1Lchr13:114009638chr21:47581981ENST00000291672-25320_323181341Compositional biasNote=Poly-Leu
TgeneSPATC1Lchr13:114009638chr21:47581981ENST00000330205-14320_32327187Compositional biasNote=Poly-Leu

- In-frame and not-retained protein feature among the 13 regional features.
>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneGRTP1chr13:114009638chr21:47581981ENST00000326039-1568_25835267DomainRab-GAP TBC
HgeneGRTP1chr13:114009638chr21:47581981ENST00000375431-3868_258113337DomainRab-GAP TBC


Top

FusionGeneSequence for GRTP1_SPATC1L


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_GRTP1_ENST00000375431_chr13_114009638_-_SPATC1L_ENST00000330205_chr21_47581981_-_273aa
MQPAERSRVPRIDPYGFERPEDFDDAAYEKFFSSYLVTLTRRAIKWSRLLQGGGVPRSRTVKRYVRKGVPLEHRARVWMVLSGAQAQMDQ
NPGYYHQLLQGERNPRLEDAIRTEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPGVTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLR
ELTQRYLALSARLEKLGYSRDVHPAFSEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDGKPLF

>In-frame_GRTP1_ENST00000375431_chr13_114009638_-_SPATC1L_ENST00000291672_chr21_47581981_-_273aa
MQPAERSRVPRIDPYGFERPEDFDDAAYEKFFSSYLVTLTRRAIKWSRLLQGGGVPRSRTVKRYVRKGVPLEHRARVWMVLSGAQAQMDQ
NPGYYHQLLQGERNPRLEDAIRTEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPGVTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLR
ELTQRYLALSARLEKLGYSRDVHPAFSEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDGKPLF

>In-frame_GRTP1_ENST00000375430_chr13_114009638_-_SPATC1L_ENST00000330205_chr21_47581981_-_273aa
MQPAERSRVPRIDPYGFERPEDFDDAAYEKFFSSYLVTLTRRAIKWSRLLQGGGVPRSRTVKRYVRKGVPLEHRARVWMVLSGAQAQMDQ
NPGYYHQLLQGERNPRLEDAIRTEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPGVTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLR
ELTQRYLALSARLEKLGYSRDVHPAFSEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDGKPLF

>In-frame_GRTP1_ENST00000375430_chr13_114009638_-_SPATC1L_ENST00000291672_chr21_47581981_-_273aa
MQPAERSRVPRIDPYGFERPEDFDDAAYEKFFSSYLVTLTRRAIKWSRLLQGGGVPRSRTVKRYVRKGVPLEHRARVWMVLSGAQAQMDQ
NPGYYHQLLQGERNPRLEDAIRTEIQSFAGAEKDARVVGEIAFQLDRRILAYVFPGVTRLYGFTVANIPEKIEQTSTKSLDGSVDERKLR
ELTQRYLALSARLEKLGYSRDVHPAFSEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDVVPPKFLGDSLLLLNCLCELSKEDGKPLF


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_GRTP1_ENST00000375431_chr13_114009638_-_SPATC1L_ENST00000330205_chr21_47581981_-_819nt
ATGCAGCCCGCCGAGCGCTCGCGGGTCCCCAGGATCGACCCGTACGGATTCGAGCGGCCTGAGGACTTCGACGACGCCGCCTACGAGAAG
TTTTTCTCCAGCTACCTGGTCACGCTCACCCGCAGGGCGATCAAATGGTCCCGGCTGCTGCAGGGCGGGGGCGTCCCCAGGAGCCGGACA
GTGAAGCGCTATGTCCGGAAAGGGGTCCCGCTGGAGCACCGTGCCCGCGTCTGGATGGTGCTGAGTGGGGCCCAGGCGCAGATGGACCAG
AATCCCGGCTACTACCACCAGCTTCTCCAGGGAGAGAGAAACCCCAGGCTGGAGGACGCCATCAGGACAGAGATCCAGAGCTTCGCGGGC
GCCGAGAAGGACGCGCGCGTGGTGGGCGAGATCGCCTTCCAGCTGGACCGCCGCATCCTGGCCTACGTGTTCCCGGGCGTGACGCGGCTC
TACGGCTTCACGGTGGCCAACATCCCCGAGAAGATCGAGCAGACCTCCACCAAGTCTCTGGACGGCTCCGTGGACGAGAGGAAGCTGCGC
GAGCTGACGCAGCGCTACCTGGCCCTGAGCGCGCGCCTGGAGAAGCTGGGCTACAGCCGCGACGTGCACCCGGCGTTCAGCGAGTTCCTC
ATCAACACCTACGGAATCCTGAAGCAGCGGCCCGACCTGCGCGCCAACCCCCTGCACAGCAGCCCGGCCGCGCTGCGCAAGCTGGTCATC
GACGTGGTGCCCCCCAAGTTCCTGGGCGACTCGCTGCTGCTGCTCAACTGCCTGTGCGAGCTCTCCAAGGAGGACGGCAAGCCCCTCTTC

>In-frame_GRTP1_ENST00000375431_chr13_114009638_-_SPATC1L_ENST00000291672_chr21_47581981_-_819nt
ATGCAGCCCGCCGAGCGCTCGCGGGTCCCCAGGATCGACCCGTACGGATTCGAGCGGCCTGAGGACTTCGACGACGCCGCCTACGAGAAG
TTTTTCTCCAGCTACCTGGTCACGCTCACCCGCAGGGCGATCAAATGGTCCCGGCTGCTGCAGGGCGGGGGCGTCCCCAGGAGCCGGACA
GTGAAGCGCTATGTCCGGAAAGGGGTCCCGCTGGAGCACCGTGCCCGCGTCTGGATGGTGCTGAGTGGGGCCCAGGCGCAGATGGACCAG
AATCCCGGCTACTACCACCAGCTTCTCCAGGGAGAGAGAAACCCCAGGCTGGAGGACGCCATCAGGACAGAGATCCAGAGCTTCGCGGGC
GCCGAGAAGGACGCGCGCGTGGTGGGCGAGATCGCCTTCCAGCTGGACCGCCGCATCCTGGCCTACGTGTTCCCGGGCGTGACGCGGCTC
TACGGCTTCACGGTGGCCAACATCCCCGAGAAGATCGAGCAGACCTCCACCAAGTCTCTGGACGGCTCCGTGGACGAGAGGAAGCTGCGC
GAGCTGACGCAGCGCTACCTGGCCCTGAGCGCGCGCCTGGAGAAGCTGGGCTACAGCCGCGACGTGCACCCGGCGTTCAGCGAGTTCCTC
ATCAACACCTACGGAATCCTGAAGCAGCGGCCCGACCTGCGCGCCAACCCCCTGCACAGCAGCCCGGCCGCGCTGCGCAAGCTGGTCATC
GACGTGGTGCCCCCCAAGTTCCTGGGCGACTCGCTGCTGCTGCTCAACTGCCTGTGCGAGCTCTCCAAGGAGGACGGCAAGCCCCTCTTC

>In-frame_GRTP1_ENST00000375430_chr13_114009638_-_SPATC1L_ENST00000330205_chr21_47581981_-_819nt
ATGCAGCCCGCCGAGCGCTCGCGGGTCCCCAGGATCGACCCGTACGGATTCGAGCGGCCTGAGGACTTCGACGACGCCGCCTACGAGAAG
TTTTTCTCCAGCTACCTGGTCACGCTCACCCGCAGGGCGATCAAATGGTCCCGGCTGCTGCAGGGCGGGGGCGTCCCCAGGAGCCGGACA
GTGAAGCGCTATGTCCGGAAAGGGGTCCCGCTGGAGCACCGTGCCCGCGTCTGGATGGTGCTGAGTGGGGCCCAGGCGCAGATGGACCAG
AATCCCGGCTACTACCACCAGCTTCTCCAGGGAGAGAGAAACCCCAGGCTGGAGGACGCCATCAGGACAGAGATCCAGAGCTTCGCGGGC
GCCGAGAAGGACGCGCGCGTGGTGGGCGAGATCGCCTTCCAGCTGGACCGCCGCATCCTGGCCTACGTGTTCCCGGGCGTGACGCGGCTC
TACGGCTTCACGGTGGCCAACATCCCCGAGAAGATCGAGCAGACCTCCACCAAGTCTCTGGACGGCTCCGTGGACGAGAGGAAGCTGCGC
GAGCTGACGCAGCGCTACCTGGCCCTGAGCGCGCGCCTGGAGAAGCTGGGCTACAGCCGCGACGTGCACCCGGCGTTCAGCGAGTTCCTC
ATCAACACCTACGGAATCCTGAAGCAGCGGCCCGACCTGCGCGCCAACCCCCTGCACAGCAGCCCGGCCGCGCTGCGCAAGCTGGTCATC
GACGTGGTGCCCCCCAAGTTCCTGGGCGACTCGCTGCTGCTGCTCAACTGCCTGTGCGAGCTCTCCAAGGAGGACGGCAAGCCCCTCTTC

>In-frame_GRTP1_ENST00000375430_chr13_114009638_-_SPATC1L_ENST00000291672_chr21_47581981_-_819nt
ATGCAGCCCGCCGAGCGCTCGCGGGTCCCCAGGATCGACCCGTACGGATTCGAGCGGCCTGAGGACTTCGACGACGCCGCCTACGAGAAG
TTTTTCTCCAGCTACCTGGTCACGCTCACCCGCAGGGCGATCAAATGGTCCCGGCTGCTGCAGGGCGGGGGCGTCCCCAGGAGCCGGACA
GTGAAGCGCTATGTCCGGAAAGGGGTCCCGCTGGAGCACCGTGCCCGCGTCTGGATGGTGCTGAGTGGGGCCCAGGCGCAGATGGACCAG
AATCCCGGCTACTACCACCAGCTTCTCCAGGGAGAGAGAAACCCCAGGCTGGAGGACGCCATCAGGACAGAGATCCAGAGCTTCGCGGGC
GCCGAGAAGGACGCGCGCGTGGTGGGCGAGATCGCCTTCCAGCTGGACCGCCGCATCCTGGCCTACGTGTTCCCGGGCGTGACGCGGCTC
TACGGCTTCACGGTGGCCAACATCCCCGAGAAGATCGAGCAGACCTCCACCAAGTCTCTGGACGGCTCCGTGGACGAGAGGAAGCTGCGC
GAGCTGACGCAGCGCTACCTGGCCCTGAGCGCGCGCCTGGAGAAGCTGGGCTACAGCCGCGACGTGCACCCGGCGTTCAGCGAGTTCCTC
ATCAACACCTACGGAATCCTGAAGCAGCGGCCCGACCTGCGCGCCAACCCCCTGCACAGCAGCCCGGCCGCGCTGCGCAAGCTGGTCATC
GACGTGGTGCCCCCCAAGTTCCTGGGCGACTCGCTGCTGCTGCTCAACTGCCTGTGCGAGCTCTCCAAGGAGGACGGCAAGCCCCTCTTC


* Fusion transcript sequences (Full-length transcript).
>In-frame_GRTP1_ENST00000375431_chr13_114009638_-_SPATC1L_ENST00000330205_chr21_47581981_-_1125nt
GGACTTAAGCGCCCCGGAGCCGGGAGGCGAACTTGGGACCCGCTGGCCTCGCTCGGTGCGCGCCTCCCTCCCCGCATGCAGCCCGCCGAG
CGCTCGCGGGTCCCCAGGATCGACCCGTACGGATTCGAGCGGCCTGAGGACTTCGACGACGCCGCCTACGAGAAGTTTTTCTCCAGCTAC
CTGGTCACGCTCACCCGCAGGGCGATCAAATGGTCCCGGCTGCTGCAGGGCGGGGGCGTCCCCAGGAGCCGGACAGTGAAGCGCTATGTC
CGGAAAGGGGTCCCGCTGGAGCACCGTGCCCGCGTCTGGATGGTGCTGAGTGGGGCCCAGGCGCAGATGGACCAGAATCCCGGCTACTAC
CACCAGCTTCTCCAGGGAGAGAGAAACCCCAGGCTGGAGGACGCCATCAGGACAGAGATCCAGAGCTTCGCGGGCGCCGAGAAGGACGCG
CGCGTGGTGGGCGAGATCGCCTTCCAGCTGGACCGCCGCATCCTGGCCTACGTGTTCCCGGGCGTGACGCGGCTCTACGGCTTCACGGTG
GCCAACATCCCCGAGAAGATCGAGCAGACCTCCACCAAGTCTCTGGACGGCTCCGTGGACGAGAGGAAGCTGCGCGAGCTGACGCAGCGC
TACCTGGCCCTGAGCGCGCGCCTGGAGAAGCTGGGCTACAGCCGCGACGTGCACCCGGCGTTCAGCGAGTTCCTCATCAACACCTACGGA
ATCCTGAAGCAGCGGCCCGACCTGCGCGCCAACCCCCTGCACAGCAGCCCGGCCGCGCTGCGCAAGCTGGTCATCGACGTGGTGCCCCCC
AAGTTCCTGGGCGACTCGCTGCTGCTGCTCAACTGCCTGTGCGAGCTCTCCAAGGAGGACGGCAAGCCCCTCTTCGCCTGGTGAGCCGCC
CCGCGCCCGCCGCCTTGCCTGCAGTAAACGCGTTTGTTCCAACCCGGGGCCGCGGTGCCTCCTGCGCGTCCCCCCGGAGGGGAAAGGGCC
GCGTCCCCCGCGCGCGAGGCCAGAGAAGGCCCCGCTCCCACCGGTGCTGGGCCCCGACCGCAGCCCGCCGCTGCCCGCACCTGCGGAGTG

>In-frame_GRTP1_ENST00000375431_chr13_114009638_-_SPATC1L_ENST00000291672_chr21_47581981_-_1112nt
GGACTTAAGCGCCCCGGAGCCGGGAGGCGAACTTGGGACCCGCTGGCCTCGCTCGGTGCGCGCCTCCCTCCCCGCATGCAGCCCGCCGAG
CGCTCGCGGGTCCCCAGGATCGACCCGTACGGATTCGAGCGGCCTGAGGACTTCGACGACGCCGCCTACGAGAAGTTTTTCTCCAGCTAC
CTGGTCACGCTCACCCGCAGGGCGATCAAATGGTCCCGGCTGCTGCAGGGCGGGGGCGTCCCCAGGAGCCGGACAGTGAAGCGCTATGTC
CGGAAAGGGGTCCCGCTGGAGCACCGTGCCCGCGTCTGGATGGTGCTGAGTGGGGCCCAGGCGCAGATGGACCAGAATCCCGGCTACTAC
CACCAGCTTCTCCAGGGAGAGAGAAACCCCAGGCTGGAGGACGCCATCAGGACAGAGATCCAGAGCTTCGCGGGCGCCGAGAAGGACGCG
CGCGTGGTGGGCGAGATCGCCTTCCAGCTGGACCGCCGCATCCTGGCCTACGTGTTCCCGGGCGTGACGCGGCTCTACGGCTTCACGGTG
GCCAACATCCCCGAGAAGATCGAGCAGACCTCCACCAAGTCTCTGGACGGCTCCGTGGACGAGAGGAAGCTGCGCGAGCTGACGCAGCGC
TACCTGGCCCTGAGCGCGCGCCTGGAGAAGCTGGGCTACAGCCGCGACGTGCACCCGGCGTTCAGCGAGTTCCTCATCAACACCTACGGA
ATCCTGAAGCAGCGGCCCGACCTGCGCGCCAACCCCCTGCACAGCAGCCCGGCCGCGCTGCGCAAGCTGGTCATCGACGTGGTGCCCCCC
AAGTTCCTGGGCGACTCGCTGCTGCTGCTCAACTGCCTGTGCGAGCTCTCCAAGGAGGACGGCAAGCCCCTCTTCGCCTGGTGAGCCGCC
CCGCGCCCGCCGCCTTGCCTGCAGTAAACGCGTTTGTTCCAACCCGGGGCCGCGGTGCCTCCTGCGCGTCCCCCCGGAGGGGAAAGGGCC
GCGTCCCCCGCGCGCGAGGCCAGAGAAGGCCCCGCTCCCACCGGTGCTGGGCCCCGACCGCAGCCCGCCGCTGCCCGCACCTGCGGAGTG

>In-frame_GRTP1_ENST00000375430_chr13_114009638_-_SPATC1L_ENST00000330205_chr21_47581981_-_1097nt
GAACTTGGGACCCGCTGGCCTCGCTCGGTGCGCGCCTCCCTCCCCGCATGCAGCCCGCCGAGCGCTCGCGGGTCCCCAGGATCGACCCGT
ACGGATTCGAGCGGCCTGAGGACTTCGACGACGCCGCCTACGAGAAGTTTTTCTCCAGCTACCTGGTCACGCTCACCCGCAGGGCGATCA
AATGGTCCCGGCTGCTGCAGGGCGGGGGCGTCCCCAGGAGCCGGACAGTGAAGCGCTATGTCCGGAAAGGGGTCCCGCTGGAGCACCGTG
CCCGCGTCTGGATGGTGCTGAGTGGGGCCCAGGCGCAGATGGACCAGAATCCCGGCTACTACCACCAGCTTCTCCAGGGAGAGAGAAACC
CCAGGCTGGAGGACGCCATCAGGACAGAGATCCAGAGCTTCGCGGGCGCCGAGAAGGACGCGCGCGTGGTGGGCGAGATCGCCTTCCAGC
TGGACCGCCGCATCCTGGCCTACGTGTTCCCGGGCGTGACGCGGCTCTACGGCTTCACGGTGGCCAACATCCCCGAGAAGATCGAGCAGA
CCTCCACCAAGTCTCTGGACGGCTCCGTGGACGAGAGGAAGCTGCGCGAGCTGACGCAGCGCTACCTGGCCCTGAGCGCGCGCCTGGAGA
AGCTGGGCTACAGCCGCGACGTGCACCCGGCGTTCAGCGAGTTCCTCATCAACACCTACGGAATCCTGAAGCAGCGGCCCGACCTGCGCG
CCAACCCCCTGCACAGCAGCCCGGCCGCGCTGCGCAAGCTGGTCATCGACGTGGTGCCCCCCAAGTTCCTGGGCGACTCGCTGCTGCTGC
TCAACTGCCTGTGCGAGCTCTCCAAGGAGGACGGCAAGCCCCTCTTCGCCTGGTGAGCCGCCCCGCGCCCGCCGCCTTGCCTGCAGTAAA
CGCGTTTGTTCCAACCCGGGGCCGCGGTGCCTCCTGCGCGTCCCCCCGGAGGGGAAAGGGCCGCGTCCCCCGCGCGCGAGGCCAGAGAAG
GCCCCGCTCCCACCGGTGCTGGGCCCCGACCGCAGCCCGCCGCTGCCCGCACCTGCGGAGTGCTTCTCACCCCTCATTAAAATCATCCGT

>In-frame_GRTP1_ENST00000375430_chr13_114009638_-_SPATC1L_ENST00000291672_chr21_47581981_-_1084nt
GAACTTGGGACCCGCTGGCCTCGCTCGGTGCGCGCCTCCCTCCCCGCATGCAGCCCGCCGAGCGCTCGCGGGTCCCCAGGATCGACCCGT
ACGGATTCGAGCGGCCTGAGGACTTCGACGACGCCGCCTACGAGAAGTTTTTCTCCAGCTACCTGGTCACGCTCACCCGCAGGGCGATCA
AATGGTCCCGGCTGCTGCAGGGCGGGGGCGTCCCCAGGAGCCGGACAGTGAAGCGCTATGTCCGGAAAGGGGTCCCGCTGGAGCACCGTG
CCCGCGTCTGGATGGTGCTGAGTGGGGCCCAGGCGCAGATGGACCAGAATCCCGGCTACTACCACCAGCTTCTCCAGGGAGAGAGAAACC
CCAGGCTGGAGGACGCCATCAGGACAGAGATCCAGAGCTTCGCGGGCGCCGAGAAGGACGCGCGCGTGGTGGGCGAGATCGCCTTCCAGC
TGGACCGCCGCATCCTGGCCTACGTGTTCCCGGGCGTGACGCGGCTCTACGGCTTCACGGTGGCCAACATCCCCGAGAAGATCGAGCAGA
CCTCCACCAAGTCTCTGGACGGCTCCGTGGACGAGAGGAAGCTGCGCGAGCTGACGCAGCGCTACCTGGCCCTGAGCGCGCGCCTGGAGA
AGCTGGGCTACAGCCGCGACGTGCACCCGGCGTTCAGCGAGTTCCTCATCAACACCTACGGAATCCTGAAGCAGCGGCCCGACCTGCGCG
CCAACCCCCTGCACAGCAGCCCGGCCGCGCTGCGCAAGCTGGTCATCGACGTGGTGCCCCCCAAGTTCCTGGGCGACTCGCTGCTGCTGC
TCAACTGCCTGTGCGAGCTCTCCAAGGAGGACGGCAAGCCCCTCTTCGCCTGGTGAGCCGCCCCGCGCCCGCCGCCTTGCCTGCAGTAAA
CGCGTTTGTTCCAACCCGGGGCCGCGGTGCCTCCTGCGCGTCCCCCCGGAGGGGAAAGGGCCGCGTCCCCCGCGCGCGAGGCCAGAGAAG
GCCCCGCTCCCACCGGTGCTGGGCCCCGACCGCAGCCCGCCGCTGCCCGCACCTGCGGAGTGCTTCTCACCCCTCATTAAAATCATCCGT


Top

FusionGenePPI for GRTP1_SPATC1L


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
GRTP1NES, PCDHGC3, GJB7, FAM63A, UBB, ATP2A1SPATC1LPARN, PPP1CC, PHC2, TRIM27, SIAH1, TCF4, PNMA1, ARL4A, IKZF1, ARMC7, LZTS2, FSD2, ASPDH, KRTAP5-9, EGFR


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


Top

RelatedDrugs for GRTP1_SPATC1L


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for GRTP1_SPATC1L


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource