![]() |
||||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Fusion gene ID: 15498 |
FusionGeneSummary for GRTP1_GRSF1 |
![]() |
Fusion gene information | Fusion gene name: GRTP1_GRSF1 | Fusion gene ID: 15498 | Hgene | Tgene | Gene symbol | GRTP1 | GRSF1 | Gene ID | 79774 | 2926 |
Gene name | growth hormone regulated TBC protein 1 | G-rich RNA sequence binding factor 1 | |
Synonyms | TBC1D6 | - | |
Cytomap | 13q34 | 4q13.3 | |
Type of gene | protein-coding | protein-coding | |
Description | growth hormone-regulated TBC protein 1TBC1 domain family member 6 | G-rich sequence factor 1GRSF-1 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q5TC63 | Q12849 | |
Ensembl transtripts involved in fusion gene | ENST00000375431, ENST00000326039, ENST00000375430, ENST00000476439, | ENST00000254799, ENST00000439371, ENST00000502323, ENST00000545193, ENST00000508091, | |
Fusion gene scores | * DoF score | 5 X 4 X 4=80 | 5 X 4 X 2=40 |
# samples | 5 | 5 | |
** MAII score | log2(5/80*10)=-0.678071905112638 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(5/40*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: GRTP1 [Title/Abstract] AND GRSF1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
![]() |
Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | CN407654 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000375431 | ENST00000254799 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000375431 | ENST00000439371 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000375431 | ENST00000502323 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000375431 | ENST00000545193 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-intron | ENST00000375431 | ENST00000508091 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000326039 | ENST00000254799 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000326039 | ENST00000439371 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000326039 | ENST00000502323 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000326039 | ENST00000545193 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-intron | ENST00000326039 | ENST00000508091 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000375430 | ENST00000254799 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000375430 | ENST00000439371 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000375430 | ENST00000502323 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000375430 | ENST00000545193 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-intron | ENST00000375430 | ENST00000508091 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000476439 | ENST00000254799 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000476439 | ENST00000439371 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000476439 | ENST00000502323 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-3CDS | ENST00000476439 | ENST00000545193 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
intron-intron | ENST00000476439 | ENST00000508091 | GRTP1 | chr13 | 113994067 | - | GRSF1 | chr4 | 71691095 | - |
Top |
FusionProtFeatures for GRTP1_GRSF1 |
![]() |
Hgene | Tgene |
GRTP1 | GRSF1 |
May act as a GTPase-activating protein for Rab familyprotein(s). | Regulator of post-transcriptional mitochondrial geneexpression, required for assembly of the mitochondrial ribosomeand for recruitment of mRNA and lncRNA. Binds RNAs containing the14 base G-rich element. Preferentially binds RNAs transcribed fromthree contiguous genes on the light strand of mtDNA, the ND6 mRNA,and the long non-coding RNAs for MT-CYB and MT-ND5, each of whichcontains multiple consensus binding sequences.{ECO:0000269|PubMed:23473033, ECO:0000269|PubMed:23473034}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for GRTP1_GRSF1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for GRTP1_GRSF1 |
![]() |
![]() |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
![]() |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for GRTP1_GRSF1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for GRTP1_GRSF1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |