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Fusion gene ID: 15495 |
FusionGeneSummary for GRSF1_ZSWIM6 |
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Fusion gene information | Fusion gene name: GRSF1_ZSWIM6 | Fusion gene ID: 15495 | Hgene | Tgene | Gene symbol | GRSF1 | ZSWIM6 | Gene ID | 2926 | 57688 |
Gene name | G-rich RNA sequence binding factor 1 | zinc finger SWIM-type containing 6 | |
Synonyms | - | AFND|NEDMAGA | |
Cytomap | 4q13.3 | 5q12.1 | |
Type of gene | protein-coding | protein-coding | |
Description | G-rich sequence factor 1GRSF-1 | zinc finger SWIM domain-containing protein 6zinc finger, SWIM domain containing 6 | |
Modification date | 20180519 | 20180523 | |
UniProtAcc | Q12849 | Q9HCJ5 | |
Ensembl transtripts involved in fusion gene | ENST00000254799, ENST00000439371, ENST00000502323, ENST00000545193, ENST00000508091, | ENST00000252744, | |
Fusion gene scores | * DoF score | 4 X 4 X 2=32 | 2 X 2 X 1=4 |
# samples | 4 | 2 | |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: GRSF1 [Title/Abstract] AND ZSWIM6 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BI061722 | GRSF1 | chr4 | 71686177 | + | ZSWIM6 | chr5 | 60759175 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000254799 | ENST00000252744 | GRSF1 | chr4 | 71686177 | + | ZSWIM6 | chr5 | 60759175 | + |
intron-intron | ENST00000439371 | ENST00000252744 | GRSF1 | chr4 | 71686177 | + | ZSWIM6 | chr5 | 60759175 | + |
intron-intron | ENST00000502323 | ENST00000252744 | GRSF1 | chr4 | 71686177 | + | ZSWIM6 | chr5 | 60759175 | + |
intron-intron | ENST00000545193 | ENST00000252744 | GRSF1 | chr4 | 71686177 | + | ZSWIM6 | chr5 | 60759175 | + |
intron-intron | ENST00000508091 | ENST00000252744 | GRSF1 | chr4 | 71686177 | + | ZSWIM6 | chr5 | 60759175 | + |
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FusionProtFeatures for GRSF1_ZSWIM6 |
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Hgene | Tgene |
GRSF1 | ZSWIM6 |
Regulator of post-transcriptional mitochondrial geneexpression, required for assembly of the mitochondrial ribosomeand for recruitment of mRNA and lncRNA. Binds RNAs containing the14 base G-rich element. Preferentially binds RNAs transcribed fromthree contiguous genes on the light strand of mtDNA, the ND6 mRNA,and the long non-coding RNAs for MT-CYB and MT-ND5, each of whichcontains multiple consensus binding sequences.{ECO:0000269|PubMed:23473033, ECO:0000269|PubMed:23473034}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for GRSF1_ZSWIM6 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for GRSF1_ZSWIM6 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GRSF1_ZSWIM6 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GRSF1_ZSWIM6 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | ZSWIM6 | C1863616 | ACROMELIC FRONTONASAL DYSOSTOSIS | 1 | UNIPROT |