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Fusion gene ID: 15468 |
FusionGeneSummary for GRM1_CNOT2 |
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Fusion gene information | Fusion gene name: GRM1_CNOT2 | Fusion gene ID: 15468 | Hgene | Tgene | Gene symbol | GRM1 | CNOT2 | Gene ID | 2911 | 4848 |
Gene name | glutamate metabotropic receptor 1 | CCR4-NOT transcription complex subunit 2 | |
Synonyms | GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 | CDC36|HSPC131|NOT2|NOT2H | |
Cytomap | 6q24.3 | 12q15 | |
Type of gene | protein-coding | protein-coding | |
Description | metabotropic glutamate receptor 1glutamate receptor, metabotropic 1protein phosphatase 1, regulatory subunit 85 | CCR4-NOT transcription complex subunit 2CCR4-associated factor 2negative regulator of transcription 2 | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q13255 | Q9NZN8 | |
Ensembl transtripts involved in fusion gene | ENST00000361719, ENST00000392299, ENST00000492807, ENST00000355289, ENST00000282753, ENST00000507907, | ENST00000229195, ENST00000418359, ENST00000548230, ENST00000551483, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 14 X 9 X 5=630 |
# samples | 1 | 11 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(11/630*10)=-2.51784830486262 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: GRM1 [Title/Abstract] AND CNOT2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | GRM1 | GO:0007186 | G-protein coupled receptor signaling pathway | 24603153 |
Hgene | GRM1 | GO:0038042 | dimeric G-protein coupled receptor signaling pathway | 24603153 |
Tgene | CNOT2 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 14707134|16712523 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SARC | TCGA-DX-A3U5-01A | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000361719 | ENST00000229195 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
Frame-shift | ENST00000361719 | ENST00000418359 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
5CDS-intron | ENST00000361719 | ENST00000548230 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
5CDS-intron | ENST00000361719 | ENST00000551483 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
Frame-shift | ENST00000392299 | ENST00000229195 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
Frame-shift | ENST00000392299 | ENST00000418359 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
5CDS-intron | ENST00000392299 | ENST00000548230 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
5CDS-intron | ENST00000392299 | ENST00000551483 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
Frame-shift | ENST00000492807 | ENST00000229195 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
Frame-shift | ENST00000492807 | ENST00000418359 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
5CDS-intron | ENST00000492807 | ENST00000548230 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
5CDS-intron | ENST00000492807 | ENST00000551483 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
Frame-shift | ENST00000355289 | ENST00000229195 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
Frame-shift | ENST00000355289 | ENST00000418359 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
5CDS-intron | ENST00000355289 | ENST00000548230 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
5CDS-intron | ENST00000355289 | ENST00000551483 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
Frame-shift | ENST00000282753 | ENST00000229195 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
Frame-shift | ENST00000282753 | ENST00000418359 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
5CDS-intron | ENST00000282753 | ENST00000548230 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
5CDS-intron | ENST00000282753 | ENST00000551483 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
Frame-shift | ENST00000507907 | ENST00000229195 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
Frame-shift | ENST00000507907 | ENST00000418359 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
5CDS-intron | ENST00000507907 | ENST00000548230 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
5CDS-intron | ENST00000507907 | ENST00000551483 | GRM1 | chr6 | 146720835 | + | CNOT2 | chr12 | 70713078 | + |
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FusionProtFeatures for GRM1_CNOT2 |
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Hgene | Tgene |
GRM1 | CNOT2 |
Component of the CCR4-NOT complex which is one of themajor cellular mRNA deadenylases and is linked to various cellularprocesses including bulk mRNA degradation, miRNA-mediatedrepression, translational repression during translationalinitiation and general transcription regulation. Additionalcomplex functions may be a consequence of its influence on mRNAexpression. Required for the CCR4-NOT complex structuralintegrity. Can repress transcription and may link the CCR4-NOTcomplex to transcriptional regulation; the repressive function mayspecifically involve the N-Cor repressor complex containing HDAC3,NCOR1 and NCOR2. Involved in the maintenance of emryonic stem (ES)cell identity. {ECO:0000269|PubMed:14707134,ECO:0000269|PubMed:16712523, ECO:0000269|PubMed:21299754,ECO:0000269|PubMed:22367759}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for GRM1_CNOT2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for GRM1_CNOT2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
GRM1 | TRPC1, GRM1, ADORA1, OPTN, ADRBK1, HTT, HOMER1, GRASP, SRC, FYN, SYK | CNOT2 | CNOT3, CNOT1, DDB1, HDAC3, NCOR2, NCOR1, GPS2, VCP, CNOT6L, CNOT6, NLK, RNF219, CNOT8, MMP7, CAPZA2, CNOT7, WRAP73, AURKA, TNRC6C, TNRC6A, TNRC6B, AGO2, CAPZB, XPO1, CACNA2D1, DDX11, FHL2, EIF6, POLD1, UPF1, RPL12, MRPS12, RQCD1, USP24, LARP1, CNOT10, SS18L2, CNOT11, KANSL3, TMEM165, AKIP1, DDX24, WDR26, LCOR, TNKS1BP1, CNKSR3, RC3H1, NANOS2, TOB1, RIBC1, GADD45B, GPBP1L1, TEX13A, BTRC, KLKB1, GLA, NFKB1 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GRM1_CNOT2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | GRM1 | Q13255 | DB00142 | Glutamic Acid | Metabotropic glutamate receptor 1 | small molecule | approved|nutraceutical |
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RelatedDiseases for GRM1_CNOT2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | GRM1 | C0011570 | Mental Depression | 5 | PSYGENET |
Hgene | GRM1 | C0011581 | Depressive disorder | 5 | PSYGENET |
Hgene | GRM1 | C0036341 | Schizophrenia | 2 | PSYGENET |
Hgene | GRM1 | C0038220 | Status Epilepticus | 2 | CTD_human |
Hgene | GRM1 | C0001973 | Alcoholic Intoxication, Chronic | 1 | PSYGENET |
Hgene | GRM1 | C0014544 | Epilepsy | 1 | CTD_human |
Hgene | GRM1 | C0014556 | Epilepsy, Temporal Lobe | 1 | CTD_human |
Hgene | GRM1 | C0016045 | fibroma | 1 | CTD_human |
Hgene | GRM1 | C0041696 | Unipolar Depression | 1 | PSYGENET |
Hgene | GRM1 | C0206639 | Neoplasms, Bone Tissue | 1 | CTD_human |
Hgene | GRM1 | C1263846 | Attention deficit hyperactivity disorder | 1 | CTD_human |