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Fusion gene ID: 15423 |
FusionGeneSummary for GRID2_PRDX6 |
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Fusion gene information | Fusion gene name: GRID2_PRDX6 | Fusion gene ID: 15423 | Hgene | Tgene | Gene symbol | GRID2 | PRDX6 | Gene ID | 2895 | 25824 |
Gene name | glutamate ionotropic receptor delta type subunit 2 | peroxiredoxin 5 | |
Synonyms | GluD2|SCAR18 | ACR1|AOEB166|B166|HEL-S-55|PLP|PMP20|PRDX6|PRXV|SBBI10|prx-V | |
Cytomap | 4q22.1-q22.2 | 11q13.1 | |
Type of gene | protein-coding | protein-coding | |
Description | glutamate receptor ionotropic, delta-2gluR delta-2 subunitglutamate receptor delta-2 subunitglutamate receptor, ionotropic, delta 2 | peroxiredoxin-5, mitochondrialAlu co-repressor 1TPx type VIantioxidant enzyme B166epididymis secretory protein Li 55liver tissue 2D-page spot 71Bperoxiredoxin Vperoxisomal antioxidant enzymethioredoxin peroxidase PMP20thioredoxin reductase | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | O43424 | P30041 | |
Ensembl transtripts involved in fusion gene | ENST00000282020, ENST00000505687, ENST00000510992, | ENST00000340385, ENST00000470017, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 3 X 3 X 1=9 |
# samples | 2 | 3 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(3/9*10)=1.73696559416621 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: GRID2 [Title/Abstract] AND PRDX6 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | PRDX6 | GO:0006979 | response to oxidative stress | 10521424 |
Tgene | PRDX6 | GO:0016480 | negative regulation of transcription by RNA polymerase III | 10095767 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BF972933 | GRID2 | chr4 | 94123007 | - | PRDX6 | chr1 | 173455450 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-3CDS | ENST00000282020 | ENST00000340385 | GRID2 | chr4 | 94123007 | - | PRDX6 | chr1 | 173455450 | + |
intron-3UTR | ENST00000282020 | ENST00000470017 | GRID2 | chr4 | 94123007 | - | PRDX6 | chr1 | 173455450 | + |
intron-3CDS | ENST00000505687 | ENST00000340385 | GRID2 | chr4 | 94123007 | - | PRDX6 | chr1 | 173455450 | + |
intron-3UTR | ENST00000505687 | ENST00000470017 | GRID2 | chr4 | 94123007 | - | PRDX6 | chr1 | 173455450 | + |
intron-3CDS | ENST00000510992 | ENST00000340385 | GRID2 | chr4 | 94123007 | - | PRDX6 | chr1 | 173455450 | + |
intron-3UTR | ENST00000510992 | ENST00000470017 | GRID2 | chr4 | 94123007 | - | PRDX6 | chr1 | 173455450 | + |
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FusionProtFeatures for GRID2_PRDX6 |
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Hgene | Tgene |
GRID2 | PRDX6 |
Receptor for glutamate. L-glutamate acts as anexcitatory neurotransmitter at many synapses in the centralnervous system. The postsynaptic actions of Glu are mediated by avariety of receptors that are named according to their selectiveagonists. Promotes synaptogenesis and mediates the D-Serine-dependent long term depression signals and AMPA receptorendocytosis of cerebellar parallel fiber-Purkinje cell (PF-PC)synapses through the beta-NRX1-CBLN1-GRID2 triad complex(PubMed:27418511). {ECO:0000269|PubMed:27418511}. | Thiol-specific peroxidase that catalyzes the reductionof hydrogen peroxide and organic hydroperoxides to water andalcohols, respectively. Can reduce H(2)O(2) and short chainorganic, fatty acid, and phospholipid hydroperoxides. Also hasphospholipase activity, and can therefore either reduce theoxidized sn-2 fatty acyl grup of phospholipids (peroxidaseactivity) or hydrolyze the sn-2 ester bond of phospholipids(phospholipase activity). These activities are dependent onbinding to phospholipids at acidic pH and to oxidized phospholipdsat cytosolic pH. Plays a role in cell protection against oxidativestress by detoxifying peroxides and in phospholipid homeostasis.{ECO:0000269|PubMed:10893423, ECO:0000269|PubMed:9497358}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for GRID2_PRDX6 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for GRID2_PRDX6 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GRID2_PRDX6 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | GRID2 | O43424 | DB00142 | Glutamic Acid | Glutamate receptor ionotropic, delta-2 | small molecule | approved|nutraceutical |
Tgene | PRDX6 | P30041 | DB02325 | Isopropyl Alcohol | Peroxiredoxin-6 | small molecule | approved|investigational |
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RelatedDiseases for GRID2_PRDX6 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | GRID2 | C4015505 | SPINOCEREBELLAR ATAXIA, AUTOSOMAL RECESSIVE 18 | 1 | ORPHANET;UNIPROT |
Tgene | PRDX6 | C0011616 | Contact Dermatitis | 1 | CTD_human |
Tgene | PRDX6 | C0013080 | Down Syndrome | 1 | CTD_human |
Tgene | PRDX6 | C0024121 | Lung Neoplasms | 1 | CTD_human |
Tgene | PRDX6 | C0035222 | Respiratory Distress Syndrome, Adult | 1 | CTD_human |
Tgene | PRDX6 | C0036341 | Schizophrenia | 1 | PSYGENET |
Tgene | PRDX6 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
Tgene | PRDX6 | C2239176 | Liver carcinoma | 1 | CTD_human |