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Fusion gene ID: 15383 |
FusionGeneSummary for GREB1L_PLD3 |
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Fusion gene information | Fusion gene name: GREB1L_PLD3 | Fusion gene ID: 15383 | Hgene | Tgene | Gene symbol | GREB1L | PLD3 | Gene ID | 80000 | 23646 |
Gene name | GREB1 like retinoic acid receptor coactivator | phospholipase D family member 3 | |
Synonyms | C18orf6|KIAA1772|RHDA3 | AD19|HU-K4|HUK4|SCA46 | |
Cytomap | 18q11.1-q11.2 | 19q13.2 | |
Type of gene | protein-coding | protein-coding | |
Description | GREB1-like proteingrowth regulation by estrogen in breast cancer 1 likegrowth regulation by estrogen in breast cancer 1-like proteingrowth regulation by estrogen in breast cancer-like | phospholipase D3choline phosphatase 3hindIII K4L homologphosphatidylcholine-hydrolyzing phospholipase D3 | |
Modification date | 20180519 | 20180519 | |
UniProtAcc | Q9C091 | Q8IV08 | |
Ensembl transtripts involved in fusion gene | ENST00000431264, ENST00000424526, ENST00000400483, ENST00000269218, ENST00000580732, ENST00000578368, | ENST00000409419, ENST00000409587, ENST00000594085, ENST00000409735, ENST00000356508, ENST00000409281, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 3 X 4 X 2=24 |
# samples | 2 | 4 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(4/24*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: GREB1L [Title/Abstract] AND PLD3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | GREB1L | GO:0001822 | kidney development | 29100091 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | BE938399 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000431264 | ENST00000409419 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
Frame-shift | ENST00000431264 | ENST00000409587 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000431264 | ENST00000594085 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000431264 | ENST00000409735 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000431264 | ENST00000356508 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000431264 | ENST00000409281 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
Frame-shift | ENST00000424526 | ENST00000409419 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
Frame-shift | ENST00000424526 | ENST00000409587 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000424526 | ENST00000594085 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000424526 | ENST00000409735 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000424526 | ENST00000356508 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000424526 | ENST00000409281 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
Frame-shift | ENST00000400483 | ENST00000409419 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
Frame-shift | ENST00000400483 | ENST00000409587 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000400483 | ENST00000594085 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000400483 | ENST00000409735 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000400483 | ENST00000356508 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000400483 | ENST00000409281 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
Frame-shift | ENST00000269218 | ENST00000409419 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
Frame-shift | ENST00000269218 | ENST00000409587 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000269218 | ENST00000594085 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000269218 | ENST00000409735 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000269218 | ENST00000356508 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000269218 | ENST00000409281 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
Frame-shift | ENST00000580732 | ENST00000409419 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
Frame-shift | ENST00000580732 | ENST00000409587 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000580732 | ENST00000594085 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000580732 | ENST00000409735 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000580732 | ENST00000356508 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
5CDS-intron | ENST00000580732 | ENST00000409281 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
3UTR-3CDS | ENST00000578368 | ENST00000409419 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
3UTR-3CDS | ENST00000578368 | ENST00000409587 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
3UTR-intron | ENST00000578368 | ENST00000594085 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
3UTR-intron | ENST00000578368 | ENST00000409735 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
3UTR-intron | ENST00000578368 | ENST00000356508 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
3UTR-intron | ENST00000578368 | ENST00000409281 | GREB1L | chr18 | 18983889 | - | PLD3 | chr19 | 40882572 | - |
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FusionProtFeatures for GREB1L_PLD3 |
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Hgene | Tgene |
GREB1L | PLD3 |
Plays a major role in early metanephros and genitaldevelopment. {ECO:0000269|PubMed:29100091}. | May be involved in APP processing.{ECO:0000305|PubMed:24336208}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for GREB1L_PLD3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for GREB1L_PLD3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GREB1L_PLD3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GREB1L_PLD3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |