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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 15094

FusionGeneSummary for GON4L_MTX1

check button Fusion gene summary
Fusion gene informationFusion gene name: GON4L_MTX1
Fusion gene ID: 15094
HgeneTgene
Gene symbol

GON4L

MTX1

Gene ID

54856

4580

Gene namegon-4 likemetaxin 1
SynonymsGON-4|GON4|YARPMTX|MTXN
Cytomap

1q22

1q22

Type of geneprotein-codingprotein-coding
DescriptionGON-4-like protein2610100B20RikYY1AP related proteinYY1AP-related protein1gon-4 homologmetaxin-1mitochondrial outer membrane import complex protein 1
Modification date2018052320180519
UniProtAcc

Q3T8J9

Q13505

Ensembl transtripts involved in fusion geneENST00000437809, ENST00000368331, 
ENST00000271883, ENST00000361040, 
ENST00000471341, 
ENST00000368376, 
ENST00000316721, ENST00000609421, 
ENST00000495589, 
Fusion gene scores* DoF score11 X 12 X 10=13201 X 1 X 1=1
# samples 151
** MAII scorelog2(15/1320*10)=-3.13750352374993
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(1/1*10)=3.32192809488736
Context

PubMed: GON4L [Title/Abstract] AND MTX1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVPRADTCGA-J4-AATZ-01AGON4Lchr1

155785596

-MTX1chr1

155180137

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shitENST00000437809ENST00000368376GON4Lchr1

155785596

-MTX1chr1

155180137

+
Frame-shitENST00000437809ENST00000316721GON4Lchr1

155785596

-MTX1chr1

155180137

+
Frame-shitENST00000437809ENST00000609421GON4Lchr1

155785596

-MTX1chr1

155180137

+
5CDS-intronENST00000437809ENST00000495589GON4Lchr1

155785596

-MTX1chr1

155180137

+
Frame-shitENST00000368331ENST00000368376GON4Lchr1

155785596

-MTX1chr1

155180137

+
Frame-shitENST00000368331ENST00000316721GON4Lchr1

155785596

-MTX1chr1

155180137

+
Frame-shitENST00000368331ENST00000609421GON4Lchr1

155785596

-MTX1chr1

155180137

+
5CDS-intronENST00000368331ENST00000495589GON4Lchr1

155785596

-MTX1chr1

155180137

+
Frame-shitENST00000271883ENST00000368376GON4Lchr1

155785596

-MTX1chr1

155180137

+
Frame-shitENST00000271883ENST00000316721GON4Lchr1

155785596

-MTX1chr1

155180137

+
Frame-shitENST00000271883ENST00000609421GON4Lchr1

155785596

-MTX1chr1

155180137

+
5CDS-intronENST00000271883ENST00000495589GON4Lchr1

155785596

-MTX1chr1

155180137

+
Frame-shitENST00000361040ENST00000368376GON4Lchr1

155785596

-MTX1chr1

155180137

+
Frame-shitENST00000361040ENST00000316721GON4Lchr1

155785596

-MTX1chr1

155180137

+
Frame-shitENST00000361040ENST00000609421GON4Lchr1

155785596

-MTX1chr1

155180137

+
5CDS-intronENST00000361040ENST00000495589GON4Lchr1

155785596

-MTX1chr1

155180137

+
5UTR-3CDSENST00000471341ENST00000368376GON4Lchr1

155785596

-MTX1chr1

155180137

+
5UTR-3CDSENST00000471341ENST00000316721GON4Lchr1

155785596

-MTX1chr1

155180137

+
5UTR-3CDSENST00000471341ENST00000609421GON4Lchr1

155785596

-MTX1chr1

155180137

+
5UTR-intronENST00000471341ENST00000495589GON4Lchr1

155785596

-MTX1chr1

155180137

+

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FusionProtFeatures for GON4L_MTX1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GON4L

Q3T8J9

MTX1

Q13505

Involved in transport of proteins into themitochondrion. Essential for embryonic development (Bysimilarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for GON4L_MTX1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for GON4L_MTX1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
GON4LDHX16, PNKD, HIST1H2BA, KRAS, HIST1H2BG, CRAMP1L, H2AFX, ASB3, TRIM25MTX1TMBIM4, MINOS1, CISD1, CLN8, TOMM40, KCNIP4, HLA-DPA1, BSG, TMEM171, CACNG4, LYPD3, POMK, EDNRA, COQ9, C19orf70, APOOL, CISD3, OCIAD1, ADCK1, LPAR4, GNRH1, VIPR2, C1orf85, GHITM, SLC2A12, MAS1, SLC39A12, SLC15A1, APLNR, SIGLEC12, HTR2C, TMEM108, SLC39A9


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for GON4L_MTX1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for GON4L_MTX1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneGON4LC3714756Intellectual Disability1CTD_human