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Fusion gene ID: 14808 |
FusionGeneSummary for GML_C8orf47 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: GML_C8orf47 | Fusion gene ID: 14808 | Hgene | Tgene | Gene symbol | GML | C8orf47 | Gene ID | 2765 | 203111 |
| Gene name | glycosylphosphatidylinositol anchored molecule like | glutamate rich 5 | |
| Synonyms | LY6DL | C8orf47 | |
| Cytomap | 8q24.3 | 8q22.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | glycosyl-phosphatidylinositol-anchored molecule-like proteinGPI anchored molecule like proteinGlycosylphosphatidylinositol-anchored molecule-like proteinglycosylphosphatidylinositol anchored molecule like protein | glutamate-rich protein 5 | |
| Modification date | 20180519 | 20180519 | |
| UniProtAcc | Q99445 | ||
| Ensembl transtripts involved in fusion gene | ENST00000220940, | ENST00000318528, ENST00000545282, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 3 X 2 X 3=18 |
| # samples | 1 | 3 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: GML [Title/Abstract] AND C8orf47 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LUAD | TCGA-67-3771-01A | GML | chr8 | 143922641 | + | C8orf47 | chr8 | 99101304 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000220940 | ENST00000318528 | GML | chr8 | 143922641 | + | C8orf47 | chr8 | 99101304 | + |
| 5CDS-intron | ENST00000220940 | ENST00000545282 | GML | chr8 | 143922641 | + | C8orf47 | chr8 | 99101304 | + |
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FusionProtFeatures for GML_C8orf47 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| GML | C8orf47 |
| May play a role in the apoptotic pathway or cell-cycleregulation induced by p53/TP53 after DNA damage. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >C8orf47 | chr8:143922641 | chr8:99101304 | ENST00000318528 | + | 0 | 3 | 219_366 | 19 | 375 | Compositional bias | Note=Glu-rich |
| Tgene | >C8orf47 | chr8:143922641 | chr8:99101304 | ENST00000545282 | + | 0 | 2 | 219_366 | -50 | 57 | Compositional bias | Note=Glu-rich |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >GML | chr8:143922641 | chr8:99101304 | ENST00000220940 | + | 3 | 4 | 29_134 | 60 | 159 | Domain | Note=UPAR/Ly6 |
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FusionGeneSequence for GML_C8orf47 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_GML_ENST00000220940_chr8_143922641_+_C8orf47_ENST00000318528_chr8_99101304_+_416aa MLLFALLLAMELPLVAASATMRAQWTYSLRCHDCAVINDFNCPNIRVCPYHIRRCMTISILTSNEHFSTAEESESCFAQPKPHALGREST VDGNVQRESRPPLQKLKVSAEPTANGVKPLQEQPLAKDVAPGRDATDQSGSTEKTQPGEGLEESGPPQPGGKEDAPAAEGKKKDAGAGTE AESLKGNAEAQPLGPEAKGQPLQAAVEKDSLRAVEVTENPQTAAEMKPLGTTENVLTLQIAGELQPQGTVGKDEQAPLLETISKENESPE ILEGSQFVETAEEQQLQATLGKEEQPQLLERIPKENVTPEVLDRSQLVEKPVMNDPFHKTPEGPGNMEQIQPEGIVGSMEHPARNVEAGA |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_GML_ENST00000220940_chr8_143922641_+_C8orf47_ENST00000318528_chr8_99101304_+_1248nt ATGCTCCTCTTTGCCTTACTCCTAGCCATGGAGCTCCCATTGGTGGCAGCCAGTGCCACCATGCGCGCTCAGTGGACTTACAGTTTGAGA TGCCATGACTGTGCGGTCATAAATGACTTCAACTGTCCCAACATTAGAGTATGTCCGTATCATATTAGGCGCTGTATGACAATCTCCATT CTAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACT GTTGATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTC CAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAGGGATGCCACAGACCAATCAGGGTCCACAGAAAAGACTCAGCCTGGAGAGGGA CTGGAGGAATCTGGGCCGCCTCAACCAGGTGGCAAAGAGGATGCCCCAGCAGCAGAAGGAAAGAAGAAAGATGCAGGAGCAGGGACAGAG GCCGAGTCTCTAAAAGGAAATGCTGAAGCTCAGCCTTTAGGACCAGAAGCCAAGGGTCAGCCTTTGCAGGCAGCAGTAGAGAAGGACTCT CTCAGAGCAGTGGAGGTCACTGAGAATCCACAAACTGCTGCAGAGATGAAGCCTCTAGGAACAACTGAGAACGTTCTGACTCTGCAAATA GCTGGAGAGCTACAACCTCAGGGCACAGTGGGAAAGGATGAGCAGGCCCCGCTTCTAGAAACAATTTCCAAAGAGAATGAATCTCCAGAA ATATTGGAAGGAAGTCAGTTTGTGGAAACAGCTGAAGAGCAGCAACTTCAGGCAACATTGGGAAAAGAGGAGCAGCCCCAGCTTCTAGAA AGAATTCCCAAAGAGAATGTAACACCAGAAGTATTGGACAGAAGTCAGCTTGTGGAAAAGCCTGTTATGAATGATCCATTCCATAAAACT CCTGAAGGTCCAGGAAACATGGAGCAGATTCAACCTGAAGGAATAGTTGGAAGCATGGAGCATCCAGCACGAAATGTAGAGGCAGGAGCA TATGTGGAAATGATCAGGAACATCCATACTAATGAAGAGGACCAACGCATTGAAGGTGAGACAGGGGAAAAGGTGGAAACAGACATGGAG |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_GML_ENST00000220940_chr8_143922641_+_C8orf47_ENST00000318528_chr8_99101304_+_1615nt GTCGGCGCGGGAGGCTCAGATGGCTGGAGGCGGCGGGCACGCACACTGCGGGGCTCCGAGGGGCACAGGTCCAGGCTCCTGCGTGAAGTG ATGCTCCTCTTTGCCTTACTCCTAGCCATGGAGCTCCCATTGGTGGCAGCCAGTGCCACCATGCGCGCTCAGTGGACTTACAGTTTGAGA TGCCATGACTGTGCGGTCATAAATGACTTCAACTGTCCCAACATTAGAGTATGTCCGTATCATATTAGGCGCTGTATGACAATCTCCATT CTAACTTCAAATGAGCATTTTTCAACTGCAGAAGAAAGTGAGTCCTGCTTTGCCCAACCAAAGCCACATGCACTGGGAAGAGAATCTACT GTTGATGGCAATGTACAAAGGGAAAGCCGTCCTCCCTTACAAAAGCTCAAGGTTTCAGCAGAGCCTACAGCTAATGGTGTTAAACCCCTC CAAGAACAGCCCCTGGCCAAGGACGTAGCCCCTGGAAGGGATGCCACAGACCAATCAGGGTCCACAGAAAAGACTCAGCCTGGAGAGGGA CTGGAGGAATCTGGGCCGCCTCAACCAGGTGGCAAAGAGGATGCCCCAGCAGCAGAAGGAAAGAAGAAAGATGCAGGAGCAGGGACAGAG GCCGAGTCTCTAAAAGGAAATGCTGAAGCTCAGCCTTTAGGACCAGAAGCCAAGGGTCAGCCTTTGCAGGCAGCAGTAGAGAAGGACTCT CTCAGAGCAGTGGAGGTCACTGAGAATCCACAAACTGCTGCAGAGATGAAGCCTCTAGGAACAACTGAGAACGTTCTGACTCTGCAAATA GCTGGAGAGCTACAACCTCAGGGCACAGTGGGAAAGGATGAGCAGGCCCCGCTTCTAGAAACAATTTCCAAAGAGAATGAATCTCCAGAA ATATTGGAAGGAAGTCAGTTTGTGGAAACAGCTGAAGAGCAGCAACTTCAGGCAACATTGGGAAAAGAGGAGCAGCCCCAGCTTCTAGAA AGAATTCCCAAAGAGAATGTAACACCAGAAGTATTGGACAGAAGTCAGCTTGTGGAAAAGCCTGTTATGAATGATCCATTCCATAAAACT CCTGAAGGTCCAGGAAACATGGAGCAGATTCAACCTGAAGGAATAGTTGGAAGCATGGAGCATCCAGCACGAAATGTAGAGGCAGGAGCA TATGTGGAAATGATCAGGAACATCCATACTAATGAAGAGGACCAACGCATTGAAGGTGAGACAGGGGAAAAGGTGGAAACAGACATGGAG AATGAGAAAGTGAGTGAAGGGGCTGAAACCAAAGAAGAAGAAACAGGAGAAGTGGTGGACCTTTCAGCAGCCACATAGATAGAAGAGTGA ACCGACACAGTGTGTTATCATAGAGGAGACAAAAATGGTAGTGAAGCTTGTGGTTATGTATCTTATCTTTCTACATTTACATGTTTTCTG TAAGGAGTGTGGTTATAGAGAGACTGTTGGAACCATGAGAAGGATGTTTCTGTGTTCTTGATTATATTGTTCTGCAAAACTGCTAAGCCA |
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FusionGenePPI for GML_C8orf47 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| GML | EIF2A, TUBA4A, LSS, CNTNAP3, DHFRL1, LAMA3, TUBB3, LAMB2, TMEM67, TUBA1A, GBF1, FAT1, FRAS1, LRIG1, CYB5R3, CLSTN1, ITGA6, PRKD2, PXDN, GAS6, UBR4, ANKRD46, AAGAB, TCTN1 | C8orf47 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GML_C8orf47 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GML_C8orf47 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
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