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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 14756

FusionGeneSummary for GLTSCR1L_PMS1

check button Fusion gene summary
Fusion gene informationFusion gene name: GLTSCR1L_PMS1
Fusion gene ID: 14756
HgeneTgene
Gene symbol

GLTSCR1L

PMS1

Gene ID

5378

Gene namePMS1 homolog 1, mismatch repair system component
SynonymsHNPCC3|MLH2|PMSL1|hPMS1
Cytomap

2q32.2

Type of geneprotein-coding
DescriptionPMS1 protein homolog 1DNA mismatch repair protein PMS1PMS1 postmeiotic segregation increased 1human homolog of yeast mutLmismatch repair gene PMSL1rhabdomyosarcoma antigen MU-RMS-40.10Brhabdomyosarcoma antigen MU-RMS-40.10E
Modification date20180523
UniProtAcc

P54277

Ensembl transtripts involved in fusion geneENST00000314073, ENST00000394168, 
ENST00000441310, ENST00000418224, 
ENST00000409823, ENST00000421722, 
ENST00000447232, ENST00000432292, 
ENST00000409985, ENST00000374826, 
Fusion gene scores* DoF score4 X 3 X 3=366 X 4 X 5=120
# samples 46
** MAII scorelog2(4/36*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(6/120*10)=-1
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: GLTSCR1L [Title/Abstract] AND PMS1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGALDKIRPTCGA-Q2-A5QZ-01AGLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
5UTR-3CDSENST00000314073ENST00000441310GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
5UTR-3CDSENST00000314073ENST00000418224GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
5UTR-3CDSENST00000314073ENST00000409823GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
5UTR-3UTRENST00000314073ENST00000421722GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
5UTR-intronENST00000314073ENST00000447232GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
5UTR-intronENST00000314073ENST00000432292GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
5UTR-intronENST00000314073ENST00000409985GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
5UTR-intronENST00000314073ENST00000374826GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
intron-3CDSENST00000394168ENST00000441310GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
intron-3CDSENST00000394168ENST00000418224GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
intron-3CDSENST00000394168ENST00000409823GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
intron-3UTRENST00000394168ENST00000421722GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
intron-intronENST00000394168ENST00000447232GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
intron-intronENST00000394168ENST00000432292GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
intron-intronENST00000394168ENST00000409985GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+
intron-intronENST00000394168ENST00000374826GLTSCR1Lchr6

42749839

+PMS1chr2

190728469

+

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FusionProtFeatures for GLTSCR1L_PMS1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GLTSCR1L

PMS1

P54277

Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. Probably involved in the repair of mismatches in DNA.{ECO:0000269|PubMed:10748105}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for GLTSCR1L_PMS1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for GLTSCR1L_PMS1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
GLTSCR1LNFYC, CDC5L, DTNBP1, ELAVL1, SMARCD1, RAB5C, BCL7C, BCL7APMS1MLH1, BRCA2, PSD2, UBC, EXO1, RFC2, PMS1, RFC4, RFC1, POLR1C, ATR, NONO, PGK1, TOP1, MCM6, SMC3, REV3L, IPO5, IPO9, RANBP9, RANGAP1, MMS19, USP5, USP13, UBAP2L, HERC2, CUL3, CUL1, USP9Y, RNF20, HELB, MOV10, BRIP1, KPNA2, SBF2, SBF1, CCNT1, CDK9, PIK3C2A, CDC5L, AKAP9, PPP2R1A, UBR5, CYLD, PSMC1, RNF123, FAN1, MSH6, MSH2, PSMC3, NTRK1, DYNLT1, PTTG1, CEP170P1, HIST1H1D, SNX21, BBS7, PAG1, AHNAK, VAMP3, HRAS, GNG5, PYGB, MCM9


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for GLTSCR1L_PMS1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for GLTSCR1L_PMS1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource