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Fusion gene ID: 14751 |
FusionGeneSummary for GLT1D1_CTNNA2 |
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Fusion gene information | Fusion gene name: GLT1D1_CTNNA2 | Fusion gene ID: 14751 | Hgene | Tgene | Gene symbol | GLT1D1 | CTNNA2 | Gene ID | 144423 | 1496 |
Gene name | glycosyltransferase 1 domain containing 1 | catenin alpha 2 | |
Synonyms | - | CAP-R|CAPR|CT114|CTNR | |
Cytomap | 12q24.33 | 2p12 | |
Type of gene | protein-coding | protein-coding | |
Description | glycosyltransferase 1 domain-containing protein 1 | catenin alpha-2alpha-N-cateninalpha-catenin-related proteincadherin-associated protein, relatedcancer/testis antigen 114catenin (cadherin-associated protein), alpha 2 | |
Modification date | 20180522 | 20180522 | |
UniProtAcc | Q96MS3 | P26232 | |
Ensembl transtripts involved in fusion gene | ENST00000442111, ENST00000281703, ENST00000537468, ENST00000542193, | ENST00000466387, ENST00000496558, ENST00000361291, ENST00000402739, ENST00000540488, ENST00000541047, ENST00000343114, ENST00000496251, ENST00000409266, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 15 X 12 X 9=1620 |
# samples | 1 | 15 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(15/1620*10)=-3.43295940727611 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: GLT1D1 [Title/Abstract] AND CTNNA2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | MESO | TCGA-TS-A8AY-01A | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000442111 | ENST00000466387 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000442111 | ENST00000496558 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000442111 | ENST00000361291 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000442111 | ENST00000402739 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000442111 | ENST00000540488 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000442111 | ENST00000541047 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000442111 | ENST00000343114 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
5CDS-intron | ENST00000442111 | ENST00000496251 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
5CDS-intron | ENST00000442111 | ENST00000409266 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000281703 | ENST00000466387 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000281703 | ENST00000496558 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000281703 | ENST00000361291 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000281703 | ENST00000402739 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000281703 | ENST00000540488 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000281703 | ENST00000541047 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
Frame-shift | ENST00000281703 | ENST00000343114 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
5CDS-intron | ENST00000281703 | ENST00000496251 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
5CDS-intron | ENST00000281703 | ENST00000409266 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000537468 | ENST00000466387 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000537468 | ENST00000496558 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000537468 | ENST00000361291 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000537468 | ENST00000402739 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000537468 | ENST00000540488 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000537468 | ENST00000541047 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000537468 | ENST00000343114 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-intron | ENST00000537468 | ENST00000496251 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-intron | ENST00000537468 | ENST00000409266 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000542193 | ENST00000466387 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000542193 | ENST00000496558 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000542193 | ENST00000361291 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000542193 | ENST00000402739 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000542193 | ENST00000540488 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000542193 | ENST00000541047 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-3CDS | ENST00000542193 | ENST00000343114 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-intron | ENST00000542193 | ENST00000496251 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
intron-intron | ENST00000542193 | ENST00000409266 | GLT1D1 | chr12 | 129338194 | + | CTNNA2 | chr2 | 80772107 | + |
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FusionProtFeatures for GLT1D1_CTNNA2 |
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Hgene | Tgene |
GLT1D1 | CTNNA2 |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for GLT1D1_CTNNA2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for GLT1D1_CTNNA2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
GLT1D1 | UBB, ASAH1, RUFY3 | CTNNA2 | PAN2, PPP2R1A, FBXW11, CD27, UTP3, SAPCD1, CTNNB1, JUP, NTRK1, SDHAF2, GAN, MCM2, EGFR, CDH1, CDH8, CDH5, CTNNBIP1, DUSP22, FBXL5, CIR1, G3BP1, UBE2A, TES |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GLT1D1_CTNNA2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GLT1D1_CTNNA2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | CTNNA2 | C0001973 | Alcoholic Intoxication, Chronic | 1 | PSYGENET |
Tgene | CTNNA2 | C0036341 | Schizophrenia | 1 | PSYGENET |
Tgene | CTNNA2 | C0038356 | Stomach Neoplasms | 1 | CTD_human |