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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 14750

FusionGeneSummary for GLS_PEBP1

check button Fusion gene summary
Fusion gene informationFusion gene name: GLS_PEBP1
Fusion gene ID: 14750
HgeneTgene
Gene symbol

GLS

PEBP1

Gene ID

27165

5037

Gene nameglutaminase 2phosphatidylethanolamine binding protein 1
SynonymsGA|GLS|LGA|hLGAHCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP
Cytomap

12q13.3

12q24.23

Type of geneprotein-codingprotein-coding
Descriptionglutaminase liver isoform, mitochondrialL-glutamine amidohydrolasebreast cell glutaminaseglutaminase 2 (liver, mitochondrial)glutaminase Iphosphate-activated glutaminasephosphate-dependent glutaminasephosphatidylethanolamine-binding protein 1Raf kinase inhibitory proteinepididymis luminal protein 210epididymis secretory protein Li 34epididymis secretory protein Li 96hippocampal cholinergic neurostimulating peptideneuropolypeptide h3prostatic bi
Modification date2018052320180523
UniProtAcc

O94925

P30086

Ensembl transtripts involved in fusion geneENST00000320717, ENST00000338435, 
ENST00000409626, ENST00000409428, 
ENST00000409215, ENST00000471443, 
ENST00000261313, ENST00000542939, 
Fusion gene scores* DoF score3 X 4 X 3=366 X 4 X 4=96
# samples 46
** MAII scorelog2(4/36*10)=0.15200309344505
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(6/96*10)=-0.678071905112638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
Context

PubMed: GLS [Title/Abstract] AND PEBP1 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BI481206GLSchr2

191760395

+PEBP1chr12

118582465

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000320717ENST00000261313GLSchr2

191760395

+PEBP1chr12

118582465

+
5CDS-3UTRENST00000320717ENST00000542939GLSchr2

191760395

+PEBP1chr12

118582465

+
In-frameENST00000338435ENST00000261313GLSchr2

191760395

+PEBP1chr12

118582465

+
5CDS-3UTRENST00000338435ENST00000542939GLSchr2

191760395

+PEBP1chr12

118582465

+
intron-3CDSENST00000409626ENST00000261313GLSchr2

191760395

+PEBP1chr12

118582465

+
intron-3UTRENST00000409626ENST00000542939GLSchr2

191760395

+PEBP1chr12

118582465

+
intron-3CDSENST00000409428ENST00000261313GLSchr2

191760395

+PEBP1chr12

118582465

+
intron-3UTRENST00000409428ENST00000542939GLSchr2

191760395

+PEBP1chr12

118582465

+
intron-3CDSENST00000409215ENST00000261313GLSchr2

191760395

+PEBP1chr12

118582465

+
intron-3UTRENST00000409215ENST00000542939GLSchr2

191760395

+PEBP1chr12

118582465

+
intron-3CDSENST00000471443ENST00000261313GLSchr2

191760395

+PEBP1chr12

118582465

+
intron-3UTRENST00000471443ENST00000542939GLSchr2

191760395

+PEBP1chr12

118582465

+

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FusionProtFeatures for GLS_PEBP1


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GLS

O94925

PEBP1

P30086

Catalyzes the first reaction in the primary pathway forthe renal catabolism of glutamine. Plays a role in maintainingacid-base homeostasis. Regulates the levels of theneurotransmitter glutamate in the brain. Isoform 2 lacks catalyticactivity. Binds ATP, opioids and phosphatidylethanolamine. Haslower affinity for phosphatidylinositol and phosphatidylcholine.Serine protease inhibitor which inhibits thrombin, neuropsin andchymotrypsin but not trypsin, tissue type plasminogen activatorand elastase (By similarity). Inhibits the kinase activity of RAF1by inhibiting its activation and by dissociating the RAF1/MEKcomplex and acting as a competitive inhibitor of MEKphosphorylation. {ECO:0000250, ECO:0000269|PubMed:18294816}. HCNP may be involved in the function of the presynapticcholinergic neurons of the central nervous system. HCNP increasesthe production of choline acetyltransferase but notacetylcholinesterase. Seems to be mediated by a specific receptor(By similarity). {ECO:0000250}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for GLS_PEBP1


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_GLS_ENST00000320717_chr2_191760395_+_PEBP1_ENST00000261313_chr12_118582465_+_0aa

>In-frame_GLS_ENST00000338435_chr2_191760395_+_PEBP1_ENST00000261313_chr12_118582465_+_0aa


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_GLS_ENST00000320717_chr2_191760395_+_PEBP1_ENST00000261313_chr12_118582465_+_0nt

>In-frame_GLS_ENST00000338435_chr2_191760395_+_PEBP1_ENST00000261313_chr12_118582465_+_0nt


* Fusion transcript sequences (Full-length transcript).
>In-frame_GLS_ENST00000320717_chr2_191760395_+_PEBP1_ENST00000261313_chr12_118582465_+_0nt

>In-frame_GLS_ENST00000338435_chr2_191760395_+_PEBP1_ENST00000261313_chr12_118582465_+_0nt


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FusionGenePPI for GLS_PEBP1


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for GLS_PEBP1


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
HgeneGLSO94925DB00142Glutamic AcidGlutaminase kidney isoform, mitochondrialsmall moleculeapproved|nutraceutical

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RelatedDiseases for GLS_PEBP1


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
HgeneGLSC0000786Spontaneous abortion1CTD_human
HgeneGLSC0023893Liver Cirrhosis, Experimental1CTD_human
HgeneGLSC0029408Degenerative polyarthritis1CTD_human
HgeneGLSC0036341Schizophrenia1PSYGENET
TgenePEBP1C0007134Renal Cell Carcinoma1CTD_human
TgenePEBP1C0018801Heart failure1CTD_human
TgenePEBP1C0024667Animal Mammary Neoplasms1CTD_human
TgenePEBP1C0024668Mammary Neoplasms, Experimental1CTD_human
TgenePEBP1C0032927Precancerous Conditions1CTD_human
TgenePEBP1C0151744Myocardial Ischemia1CTD_human