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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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Fusion gene ID: 14489

FusionGeneSummary for GBF1_NT5C2

check button Fusion gene summary
Fusion gene informationFusion gene name: GBF1_NT5C2
Fusion gene ID: 14489
HgeneTgene
Gene symbol

GBF1

NT5C2

Gene ID

80142

22978

Gene nameprostaglandin E synthase 25'-nucleotidase, cytosolic II
SynonymsC9orf15|GBF-1|GBF1|PGES2|mPGES-2GMP|NT5B|PNT5|SPG45|SPG65|cN-II
Cytomap

9q34.11

10q24.32-q24.33

Type of geneprotein-codingprotein-coding
Descriptionprostaglandin E synthase 2GATE-binding factor 1gamma-interferon-activated transcriptional element-binding factor 1mPGE synthase-2membrane-associated prostaglandin E synthase 2microsomal prostaglandin E synthase-2prostaglandin-H(2) E-isomerasecytosolic purine 5'-nucleotidase5'-nucleotidase (purine), cytosolic type BIMP-specific 5'-NT
Modification date2018051920180523
UniProtAcc

Q92538

P49902

Ensembl transtripts involved in fusion geneENST00000369983, ENST00000476019, 
ENST00000343289, ENST00000404739, 
ENST00000369857, ENST00000423468, 
ENST00000470299, 
Fusion gene scores* DoF score11 X 7 X 8=6162 X 6 X 2=24
# samples 126
** MAII scorelog2(12/616*10)=-2.35989594508638
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(6/24*10)=1.32192809488736
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
Context

PubMed: GBF1 [Title/Abstract] AND NT5C2 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotationOncogene involved fusion gene, in-frame and retained their domain.
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID

check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVCOADTCGA-CA-5254-01AGBF1chr10

104019873

+NT5C2chr10

104866463

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
In-frameENST00000369983ENST00000343289GBF1chr10

104019873

+NT5C2chr10

104866463

-
In-frameENST00000369983ENST00000404739GBF1chr10

104019873

+NT5C2chr10

104866463

-
5CDS-intronENST00000369983ENST00000369857GBF1chr10

104019873

+NT5C2chr10

104866463

-
5CDS-intronENST00000369983ENST00000423468GBF1chr10

104019873

+NT5C2chr10

104866463

-
5CDS-intronENST00000369983ENST00000470299GBF1chr10

104019873

+NT5C2chr10

104866463

-
intron-3CDSENST00000476019ENST00000343289GBF1chr10

104019873

+NT5C2chr10

104866463

-
intron-3CDSENST00000476019ENST00000404739GBF1chr10

104019873

+NT5C2chr10

104866463

-
intron-intronENST00000476019ENST00000369857GBF1chr10

104019873

+NT5C2chr10

104866463

-
intron-intronENST00000476019ENST00000423468GBF1chr10

104019873

+NT5C2chr10

104866463

-
intron-intronENST00000476019ENST00000470299GBF1chr10

104019873

+NT5C2chr10

104866463

-

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FusionProtFeatures for GBF1_NT5C2


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
GBF1

Q92538

NT5C2

P49902

Guanine-nucleotide exchange factor (GEF) for members ofthe Arf family of small GTPases involved in trafficking in theearly secretory pathway; its GEF activity initiates the coating ofnascent vesicles via the localized generation of activated ARFsthrough replacement of GDP with GTP. Recruitment to cis-Golgimembranes requires membrane association of Arf-GDP and can beregulated by ARF1, ARF3, ARF4 and ARF5. Involved in therecruitment of the COPI coat complex to the endoplasmic reticulumexit sites (ERES), and the endoplasmic reticulum-Golgiintermediate (ERGIC) and cis-Golgi compartments which implicatesARF1 activation. Involved in COPI vesicle-dependent retrogradetransport from the ERGIC and cis-Golgi compartments to theendoplasmic reticulum (ER) (PubMed:16926190, PubMed:17956946,PubMed:18003980, PubMed:12047556, PubMed:12808027,PubMed:19039328, PubMed:24213530). Involved in the trans-Golginetwork recruitment of GGA1, GGA2, GGA3, BIG1, BIG2, and the AP-1adaptor protein complex related to chlathrin-dependent transport;the function requires its GEF activity (probably at least in parton ARF4 and ARF5) (PubMed:23386609). Has GEF activity towards ARF1(PubMed:15616190). Has in vitro GEF activity towards ARF5 (Bysimilarity). Involved in the processing of PSAP (PubMed:17666033).Required for the assembly of the Golgi apparatus (PubMed:12808027,PubMed:18003980). The AMPK-phosphorylated form is involved inGolgi disassembly during mitotis and under stress conditions(PubMed:18063581, PubMed:23418352). May be involved in the COPIvesicle-dependent recruitment of PNPLA2 to lipid droplets;however, this function is under debate (PubMed:19461073,PubMed:22185782). In neutrophils, involved in G protein-coupledreceptor (GPCR)-mediated chemotaxis und superoxide production.Proposed to be recruited by phosphatidylinositol-phosphatesgenerated upon GPCR stimulation to the leading edge where itrecruits and activates ARF1, and is involved in recruitment ofGIT2 and the NADPH oxidase complex (PubMed:22573891).{ECO:0000250|UniProtKB:Q9R1D7, ECO:0000269|PubMed:12047556,ECO:0000269|PubMed:12808027, ECO:0000269|PubMed:15616190,ECO:0000269|PubMed:16926190, ECO:0000269|PubMed:17666033,ECO:0000269|PubMed:17956946, ECO:0000269|PubMed:18003980,ECO:0000269|PubMed:18063581, ECO:0000269|PubMed:19461073,ECO:0000269|PubMed:22185782, ECO:0000269|PubMed:22573891,ECO:0000269|PubMed:23386609, ECO:0000269|PubMed:23418352,ECO:0000269|PubMed:24213530, ECO:0000305|PubMed:19039328,ECO:0000305|PubMed:22573891}. May have a critical role in the maintenance of aconstant composition of intracellular purine/pyrimidinenucleotides in cooperation with other nucleotidases.Preferentially hydrolyzes inosine 5'-monophosphate (IMP) and otherpurine nucleotides.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
>>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
TgeneNT5C2chr10:104019873chr10:104866463ENST00000343289-218549_56158562Compositional biasNote=Asp/Glu-rich (acidic)
TgeneNT5C2chr10:104019873chr10:104866463ENST00000404739-117549_56158562Compositional biasNote=Asp/Glu-rich (acidic)
TgeneNT5C2chr10:104019873chr10:104866463ENST00000343289-218202_21058562RegionSubstrate binding
TgeneNT5C2chr10:104019873chr10:104866463ENST00000404739-117202_21058562RegionSubstrate binding

- In-frame and not-retained protein feature among the 13 regional features.
>>>
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note
HgeneGBF1chr10:104019873chr10:104866463ENST00000369983+3401751_1854541860Compositional biasNote=Pro-rich
HgeneGBF1chr10:104019873chr10:104866463ENST00000369983+340692_882541860DomainSEC7
HgeneGBF1chr10:104019873chr10:104866463ENST00000369983+340886_1370541860RegionPhosphatidylinositol-phosphate binding%3B required for translocation to the leading edge and for ARF1 activation upon GPCR signaling


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FusionGeneSequence for GBF1_NT5C2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.
>In-frame_GBF1_ENST00000369983_chr10_104019873_+_NT5C2_ENST00000343289_chr10_104866463_-_558aa
MVDKNIYIIQGEINIVVGAIKRNARWSTHTPLDEERDPLLHSFGHLKEVLNSITVYKSPEYESLGFELTVERLVSIGYPQELLSFAYDST
FPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETG
FKDGDLFMSYRSMFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGKVFLATNSDYKYTDKIMTYLFDFPHGPKPGS
SHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQ
GWRTFLVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMGSLFRSGSRQTLFASQV
MRYADLYAASFINLLYYPFSYLFRAAHVLMPHESTVEHTHVDINEMESPLATRNRTSVDFKDTDYKRHQLTRSISEIKPPNLFPLAPQEI

>In-frame_GBF1_ENST00000369983_chr10_104019873_+_NT5C2_ENST00000404739_chr10_104866463_-_558aa
MVDKNIYIIQGEINIVVGAIKRNARWSTHTPLDEERDPLLHSFGHLKEVLNSITVYKSPEYESLGFELTVERLVSIGYPQELLSFAYDST
FPTRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFTNCPRYTSCETG
FKDGDLFMSYRSMFQDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEVGKVFLATNSDYKYTDKIMTYLFDFPHGPKPGS
SHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQ
GWRTFLVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSNERPDISSIQRRIKKVTHDMDMCYGMMGSLFRSGSRQTLFASQV
MRYADLYAASFINLLYYPFSYLFRAAHVLMPHESTVEHTHVDINEMESPLATRNRTSVDFKDTDYKRHQLTRSISEIKPPNLFPLAPQEI


* Fusion transcript sequences (only coding sequence (CDS) region).
>In-frame_GBF1_ENST00000369983_chr10_104019873_+_NT5C2_ENST00000343289_chr10_104866463_-_1674nt
ATGGTGGATAAGAATATTTACATCATTCAAGGGGAGATTAACATTGTGGTTGGGGCCATCAAACGAAATGCCCGATGGAGCACCCATACA
CCACTGGATGAAGAACGGGATCCTCTGCTGCATAGTTTCGGTCATCTAAAGGAGGTTTTAAACAGTATAACAGTGTACAAGTCCCCAGAG
TATGAGTCCCTTGGTTTTGAGCTTACTGTGGAGAGATTAGTTTCTATTGGCTATCCCCAGGAGTTGCTCAGCTTTGCTTATGATTCTACA
TTCCCTACCAGGGGACTTGTCTTTGACACACTGTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTCTGTGCACATGGA
TTTAACTTTATAAGGGGACCAGAAACTAGAGAACAGTATCCAAATAAATTTATCCAGCGAGATGATACTGAAAGATTTTACATTCTGAAC
ACACTATTCAACCTACCAGAGACCTACCTGTTGGCCTGCCTAGTAGATTTTTTTACTAATTGTCCCAGATATACCAGTTGTGAAACAGGA
TTTAAAGATGGGGACCTCTTCATGTCCTACCGGAGTATGTTCCAGGATGTAAGAGATGCTGTTGACTGGGTTCATTACAAGGGCTCCCTT
AAGGAAAAGACAGTTGAAAATCTTGAGAAGTATGTAGTCAAAGATGGAAAACTGCCTTTGCTTCTGAGCCGGATGAAGGAAGTAGGGAAA
GTATTTCTTGCTACCAACAGTGACTATAAATATACAGATAAAATTATGACTTACCTGTTTGACTTCCCACATGGCCCCAAGCCTGGGAGC
TCCCATCGACCATGGCAGTCCTACTTTGACTTGATCTTGGTGGATGCACGGAAACCACTCTTTTTTGGAGAAGGCACAGTACTGCGTCAG
GTGGATACTAAAACTGGCAAGCTGAAAATTGGTACCTACACAGGGCCCCTACAGCATGGTATCGTCTACTCAGGAGGTTCTTCTGATACG
ATCTGTGACCTGTTGGGAGCCAAGGGAAAAGACATTTTGTATATTGGAGATCACATTTTTGGGGACATTTTAAAATCAAAGAAACGGCAA
GGGTGGCGAACTTTTTTGGTGATTCCTGAACTCGCACAGGAGCTACATGTCTGGACTGACAAGAGTTCACTTTTCGAAGAACTTCAGAGC
TTGGATATTTTCTTGGCTGAACTCTACAAGCATCTTGACAGCAGTAGCAATGAGCGTCCAGACATCAGTTCCATCCAGAGACGTATTAAG
AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTTCGCAGTGGCTCCCGGCAGACCCTTTTTGCCAGTCAAGTG
ATGCGTTATGCTGACCTCTATGCAGCATCTTTCATCAACCTGCTGTATTACCCTTTCAGCTACCTCTTCAGGGCTGCCCATGTCTTGATG
CCTCATGAATCAACGGTGGAGCACACACACGTAGATATCAATGAGATGGAGTCTCCTCTTGCCACCCGGAACCGCACATCAGTGGATTTC
AAAGACACTGACTACAAGCGGCACCAGCTGACACGGTCAATTAGTGAGATTAAACCTCCCAACCTCTTCCCACTGGCCCCCCAGGAAATT

>In-frame_GBF1_ENST00000369983_chr10_104019873_+_NT5C2_ENST00000404739_chr10_104866463_-_1674nt
ATGGTGGATAAGAATATTTACATCATTCAAGGGGAGATTAACATTGTGGTTGGGGCCATCAAACGAAATGCCCGATGGAGCACCCATACA
CCACTGGATGAAGAACGGGATCCTCTGCTGCATAGTTTCGGTCATCTAAAGGAGGTTTTAAACAGTATAACAGTGTACAAGTCCCCAGAG
TATGAGTCCCTTGGTTTTGAGCTTACTGTGGAGAGATTAGTTTCTATTGGCTATCCCCAGGAGTTGCTCAGCTTTGCTTATGATTCTACA
TTCCCTACCAGGGGACTTGTCTTTGACACACTGTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTCTGTGCACATGGA
TTTAACTTTATAAGGGGACCAGAAACTAGAGAACAGTATCCAAATAAATTTATCCAGCGAGATGATACTGAAAGATTTTACATTCTGAAC
ACACTATTCAACCTACCAGAGACCTACCTGTTGGCCTGCCTAGTAGATTTTTTTACTAATTGTCCCAGATATACCAGTTGTGAAACAGGA
TTTAAAGATGGGGACCTCTTCATGTCCTACCGGAGTATGTTCCAGGATGTAAGAGATGCTGTTGACTGGGTTCATTACAAGGGCTCCCTT
AAGGAAAAGACAGTTGAAAATCTTGAGAAGTATGTAGTCAAAGATGGAAAACTGCCTTTGCTTCTGAGCCGGATGAAGGAAGTAGGGAAA
GTATTTCTTGCTACCAACAGTGACTATAAATATACAGATAAAATTATGACTTACCTGTTTGACTTCCCACATGGCCCCAAGCCTGGGAGC
TCCCATCGACCATGGCAGTCCTACTTTGACTTGATCTTGGTGGATGCACGGAAACCACTCTTTTTTGGAGAAGGCACAGTACTGCGTCAG
GTGGATACTAAAACTGGCAAGCTGAAAATTGGTACCTACACAGGGCCCCTACAGCATGGTATCGTCTACTCAGGAGGTTCTTCTGATACG
ATCTGTGACCTGTTGGGAGCCAAGGGAAAAGACATTTTGTATATTGGAGATCACATTTTTGGGGACATTTTAAAATCAAAGAAACGGCAA
GGGTGGCGAACTTTTTTGGTGATTCCTGAACTCGCACAGGAGCTACATGTCTGGACTGACAAGAGTTCACTTTTCGAAGAACTTCAGAGC
TTGGATATTTTCTTGGCTGAACTCTACAAGCATCTTGACAGCAGTAGCAATGAGCGTCCAGACATCAGTTCCATCCAGAGACGTATTAAG
AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTTCGCAGTGGCTCCCGGCAGACCCTTTTTGCCAGTCAAGTG
ATGCGTTATGCTGACCTCTATGCAGCATCTTTCATCAACCTGCTGTATTACCCTTTCAGCTACCTCTTCAGGGCTGCCCATGTCTTGATG
CCTCATGAATCAACGGTGGAGCACACACACGTAGATATCAATGAGATGGAGTCTCCTCTTGCCACCCGGAACCGCACATCAGTGGATTTC
AAAGACACTGACTACAAGCGGCACCAGCTGACACGGTCAATTAGTGAGATTAAACCTCCCAACCTCTTCCCACTGGCCCCCCAGGAAATT


* Fusion transcript sequences (Full-length transcript).
>In-frame_GBF1_ENST00000369983_chr10_104019873_+_NT5C2_ENST00000343289_chr10_104866463_-_5423nt
AGTTACCACGTCAGTGAGCTGACAGGGAAGGTACCCGGCTCTACTGCCCGTCCCGGACGACTCATCCTGGCGGACTGTGCAGTCCCACCC
TGACTTCGGCCTCAATTTCCAGGAAACAGGCTCCTTCTCTTCTCCCATCTGCTACCAGAGCCGGGAGAGCTGCTCGGAGACGCCTCCGGG
GTGCGGGCTGGACATGAGCAGCGGCTGCCGGTCCTGGGACTAGGCCCCGCCATTTTGGATCCGCTGACAGGTTTGCCAAGATGGTGGATA
AGAATATTTACATCATTCAAGGGGAGATTAACATTGTGGTTGGGGCCATCAAACGAAATGCCCGATGGAGCACCCATACACCACTGGATG
AAGAACGGGATCCTCTGCTGCATAGTTTCGGTCATCTAAAGGAGGTTTTAAACAGTATAACAGTGTACAAGTCCCCAGAGTATGAGTCCC
TTGGTTTTGAGCTTACTGTGGAGAGATTAGTTTCTATTGGCTATCCCCAGGAGTTGCTCAGCTTTGCTTATGATTCTACATTCCCTACCA
GGGGACTTGTCTTTGACACACTGTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTCTGTGCACATGGATTTAACTTTA
TAAGGGGACCAGAAACTAGAGAACAGTATCCAAATAAATTTATCCAGCGAGATGATACTGAAAGATTTTACATTCTGAACACACTATTCA
ACCTACCAGAGACCTACCTGTTGGCCTGCCTAGTAGATTTTTTTACTAATTGTCCCAGATATACCAGTTGTGAAACAGGATTTAAAGATG
GGGACCTCTTCATGTCCTACCGGAGTATGTTCCAGGATGTAAGAGATGCTGTTGACTGGGTTCATTACAAGGGCTCCCTTAAGGAAAAGA
CAGTTGAAAATCTTGAGAAGTATGTAGTCAAAGATGGAAAACTGCCTTTGCTTCTGAGCCGGATGAAGGAAGTAGGGAAAGTATTTCTTG
CTACCAACAGTGACTATAAATATACAGATAAAATTATGACTTACCTGTTTGACTTCCCACATGGCCCCAAGCCTGGGAGCTCCCATCGAC
CATGGCAGTCCTACTTTGACTTGATCTTGGTGGATGCACGGAAACCACTCTTTTTTGGAGAAGGCACAGTACTGCGTCAGGTGGATACTA
AAACTGGCAAGCTGAAAATTGGTACCTACACAGGGCCCCTACAGCATGGTATCGTCTACTCAGGAGGTTCTTCTGATACGATCTGTGACC
TGTTGGGAGCCAAGGGAAAAGACATTTTGTATATTGGAGATCACATTTTTGGGGACATTTTAAAATCAAAGAAACGGCAAGGGTGGCGAA
CTTTTTTGGTGATTCCTGAACTCGCACAGGAGCTACATGTCTGGACTGACAAGAGTTCACTTTTCGAAGAACTTCAGAGCTTGGATATTT
TCTTGGCTGAACTCTACAAGCATCTTGACAGCAGTAGCAATGAGCGTCCAGACATCAGTTCCATCCAGAGACGTATTAAGAAAGTAACTC
ATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTTCGCAGTGGCTCCCGGCAGACCCTTTTTGCCAGTCAAGTGATGCGTTATG
CTGACCTCTATGCAGCATCTTTCATCAACCTGCTGTATTACCCTTTCAGCTACCTCTTCAGGGCTGCCCATGTCTTGATGCCTCATGAAT
CAACGGTGGAGCACACACACGTAGATATCAATGAGATGGAGTCTCCTCTTGCCACCCGGAACCGCACATCAGTGGATTTCAAAGACACTG
ACTACAAGCGGCACCAGCTGACACGGTCAATTAGTGAGATTAAACCTCCCAACCTCTTCCCACTGGCCCCCCAGGAAATTACACACTGCC
ATGACGAAGATGATGATGAAGAGGAGGAGGAGGAGGAAGAATAAGGAGGAAAACCAAAACCCCAAGCACCCATTAAACAAGTCCTGGCAG
GACTCACAGGAACAAACGAGGTCCCTGTTAGGGTTCTACTCGGGGGAGGGAGGGGGCTCCATGAAAGGTACGTCTGAAAAGTTTCTGAAG
ATTTTATTATCATAGATACTTGTTTTGGTTTTGTGTATCTGTACTCTCTGCAGATGGTCCAAAATTGTAATGGAGTCTGTATTAGAAGAA
AATAAGGGTAAAATCAGGCTGAACTGCATGTATATGGCTCCACTGTGGCTTGTGACACTTTTAAAATCATCCGTATGTCAGTGTATCTGG
ATACACGAGGAAAAGGAAAGAGTCTCAGAGTGGAACAAAGAGTGGGAAGAGGTGATCTGTAATGTTACAAATTGTGCTATTACTCCAAGG
TCCAACTTTTCCAGTGCATTACATGGTATTGTATATCAGTGGAGAAATGTATTATTTCCATGATCAAATGTAGTCTCTGTTAAGGTCAAG
TTTTCTTTTATAAGCCTTTAATTCATCCTCAGTGACTCTGGCAAGGCTGCTTCTCTATCACTGGCTTTGCACAGAAGTATGCTCTACTTG
CGTTGCTTTAGGGCAGGATTCTATTTTGAGGGAAAAGACAGTATCCTTATTACCTTTTGTTTGTTTAATAGCACAAATGCTTATTTGTTA
TCCAAAAACAACCTCCTTCTTATCTGTGATAAATCTATAGAAAGAATTTAGCTGCAAGTGGACAAAGGAACAAGCCCCCAGAAAAGAAAG
GGAAGAACTGCCTTCTTATACTACAGAACATGCATTAGTGTGGGCTATATAGCTGTGGCTCATGCTACCCAATTCCAGATTTCTTTGTCC
TCTAAGAGTTGATTGCTGTATATTAAAATTGAACATCAGAGGATGGGAAGAGGGCTCTGTAAGCCAGAACCTTACTAAAGTAGAGGGCAC
AATCAGTGTGAATAAATTCACTTCAGAATCTCAAGTCAAGGCCAGGCACGGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG
ACAGGCGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTTACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAATTACCTGGG
CGTGGTGGTGCATGCCTGTAATCCCATCATCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAG
CCAGGATTGTGCCATTGCACTCCAGCCTGGGCAACAAGAACAAAACTCCATCTCAAAAAATAAAAATCCCAATCCCAAGTCGAAATCACC
TCTTGTTTTAAACAAGAATGAATCATTACTGTGTATGTTAGGGTATTAAAACTGTTTCACCAGTACAGTGAAAGTTGTTTCAACATTTTA
AACAAACAGTGGTTATAGACTCTTTCTTTAACCATTGTATATTTTCTTCCATTCTTGTCATTGGTCAATAGGGGAGGGTAGATTAGCTGC
TCCAGAATTCAATAAAGTGTAATATTTCTAACGGTGACTTTGACCTATTCTGTAGTACAACTGTAATAGCTATTGGTCTTCAAGTGGGTT
TAGATTTGGTGACATCAGTTTGATATTCTCTTAAAGGAAATAAATATTCAAGAACTGATTATGTTCTAACATGATTATATTCATGGTGTT
ACATAGGCCTCAATTTTTTCACAGAAAGATTTTTGGAACAGGACTGTGAAGTGAGGCTTTTTAAAAAATTATTTTATAAGCAGAGAACAC
AGCCTGATAACTTAGTCAAGGATATACTGTCTGTCTCACTACTTTGGACTTATATGGCTTCAGATTAAGTCATCCAAGAAACATACATAC
ATTCTAAATGGTATATATTGGGAATATATGCCCCTTTAAAAGAATCAGGTCAGAAATGCAATAACAATTAGACTAGACTGTTGCCCGTGT
TAGGAGAATGTGTGGTCATCCTAGTTACTAATTACTCTCACTCAAGATGGAGATGTTGTCCAGTTTAACATAGTCTTAAGTTTTCTTAAA
CCCAAATAATTTATGAGTAGCTTATTACATCTGCAGAGCTACCTTATTATAATAGTACATTTACATATTGTCTCTTTTAGAGTAAGGACC
ACATGATTGCTTTGCTTTAATTTACCACTTTTTGTATTGCATCCATATAAGAGTGTCTTACTAGCCAGATGATTCCATGGCAAATGATTC
TCTGGGTCCAAAGATCGGAAAGTGAAAAGCACACAGCTGGAATAAGCAACAACTCCACTGCTAGTTACAGCTCTCCGTAGGACCACCAAA
ACGTATTCAAGAGCTCTAGGATTCCATAAGACCCAGAGCAAAATGGTGCCTCTCTGTATATTATTCTTAAGAGTGTGCTGGGAAGTCAAT
GGTCCATGGGTAGGCAGGGCAGCTGTAACTGGGCTTTTTAAAACAAATTATGAGTTTTCTCTCTGTTGCCAGTAGTTAAGGAAGCTGAAC
TTAAAAGGTATACTTTTTTCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCTGCGGAGTTTTATACCGTGAGAAGACCATTCT
GCCACTTCTTTTGAGAATTTTTTCCCAGGCATTTTGAAAACACTATAGGCATTGTAGAACACCAGGCAACCCCTTCTTGGTTGCTAGACT
GAACTCCCAACCTTACAGCATGTACTGACAGGTCCCCTAGCCTCCCCAGCAGTTGGTCAGTGGTACAGCAGACCCAGGCCCTGCTGGGTT
TCCTTGGGCAGAGGAATTGCCCAGTACATTCATTCATCTCTGCAAAGATAGATAGTCAGTGAAAACTCTGATGGTGTACTTCAGAAAAGT
TGGTCACAGCCAAGAAAGTTTAGGGTTCTATTTAGACCTAAGATTTTTCTCTTGCCATAAGCATACCTCTGCTGAGACCTAAAATAATAA
CGCAAACCCTTCAAGCTACCCTAAGATACTTTTAGAAGTCGTTTTTAATAGAACTACAAATCCTTAAGTCACATTAGCATTGTTAAGAAA
CCACTTTAAAAAGCCACATGCAGTTGCATGTCAGATTTAGAAGTATTTTGTCCATGTTTAGGTATTTCTAAATCAGATGTATTTATTTAA
GAAATACTTTGTCAACAACTTTAAAGCCCAGCAATTTTTCCAAGGCTGCCTGGTCATTTTAAAATAAATACTCTGCTTATTCACCACGAA
TAGCCTGAGACAACTACATATTTAAGTCTGTATTAGGGTAGGAACCTTACCCACATTCCATGTTATGGAAACTATTTAATCTGTCTTTGA
TGGTGGGAAAAATGGTAACTATGATCTAGCTATTGCCATACAGTTAACGCTCCAATTCCTCACTGGGCTTAGTAGTTTAGGGCTCAAATA
CTTATGTTTCTCATGATGATCTTTAGTGGTGATCAGGGAATCCAGCTTTTCTTAAAAGTTTTTCCTCAAATAGAACAATTTCAAATGATA

>In-frame_GBF1_ENST00000369983_chr10_104019873_+_NT5C2_ENST00000404739_chr10_104866463_-_3589nt
AGTTACCACGTCAGTGAGCTGACAGGGAAGGTACCCGGCTCTACTGCCCGTCCCGGACGACTCATCCTGGCGGACTGTGCAGTCCCACCC
TGACTTCGGCCTCAATTTCCAGGAAACAGGCTCCTTCTCTTCTCCCATCTGCTACCAGAGCCGGGAGAGCTGCTCGGAGACGCCTCCGGG
GTGCGGGCTGGACATGAGCAGCGGCTGCCGGTCCTGGGACTAGGCCCCGCCATTTTGGATCCGCTGACAGGTTTGCCAAGATGGTGGATA
AGAATATTTACATCATTCAAGGGGAGATTAACATTGTGGTTGGGGCCATCAAACGAAATGCCCGATGGAGCACCCATACACCACTGGATG
AAGAACGGGATCCTCTGCTGCATAGTTTCGGTCATCTAAAGGAGGTTTTAAACAGTATAACAGTGTACAAGTCCCCAGAGTATGAGTCCC
TTGGTTTTGAGCTTACTGTGGAGAGATTAGTTTCTATTGGCTATCCCCAGGAGTTGCTCAGCTTTGCTTATGATTCTACATTCCCTACCA
GGGGACTTGTCTTTGACACACTGTATGGAAATCTTTTGAAAGTCGATGCCTATGGAAACCTCTTGGTCTGTGCACATGGATTTAACTTTA
TAAGGGGACCAGAAACTAGAGAACAGTATCCAAATAAATTTATCCAGCGAGATGATACTGAAAGATTTTACATTCTGAACACACTATTCA
ACCTACCAGAGACCTACCTGTTGGCCTGCCTAGTAGATTTTTTTACTAATTGTCCCAGATATACCAGTTGTGAAACAGGATTTAAAGATG
GGGACCTCTTCATGTCCTACCGGAGTATGTTCCAGGATGTAAGAGATGCTGTTGACTGGGTTCATTACAAGGGCTCCCTTAAGGAAAAGA
CAGTTGAAAATCTTGAGAAGTATGTAGTCAAAGATGGAAAACTGCCTTTGCTTCTGAGCCGGATGAAGGAAGTAGGGAAAGTATTTCTTG
CTACCAACAGTGACTATAAATATACAGATAAAATTATGACTTACCTGTTTGACTTCCCACATGGCCCCAAGCCTGGGAGCTCCCATCGAC
CATGGCAGTCCTACTTTGACTTGATCTTGGTGGATGCACGGAAACCACTCTTTTTTGGAGAAGGCACAGTACTGCGTCAGGTGGATACTA
AAACTGGCAAGCTGAAAATTGGTACCTACACAGGGCCCCTACAGCATGGTATCGTCTACTCAGGAGGTTCTTCTGATACGATCTGTGACC
TGTTGGGAGCCAAGGGAAAAGACATTTTGTATATTGGAGATCACATTTTTGGGGACATTTTAAAATCAAAGAAACGGCAAGGGTGGCGAA
CTTTTTTGGTGATTCCTGAACTCGCACAGGAGCTACATGTCTGGACTGACAAGAGTTCACTTTTCGAAGAACTTCAGAGCTTGGATATTT
TCTTGGCTGAACTCTACAAGCATCTTGACAGCAGTAGCAATGAGCGTCCAGACATCAGTTCCATCCAGAGACGTATTAAGAAAGTAACTC
ATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTTCGCAGTGGCTCCCGGCAGACCCTTTTTGCCAGTCAAGTGATGCGTTATG
CTGACCTCTATGCAGCATCTTTCATCAACCTGCTGTATTACCCTTTCAGCTACCTCTTCAGGGCTGCCCATGTCTTGATGCCTCATGAAT
CAACGGTGGAGCACACACACGTAGATATCAATGAGATGGAGTCTCCTCTTGCCACCCGGAACCGCACATCAGTGGATTTCAAAGACACTG
ACTACAAGCGGCACCAGCTGACACGGTCAATTAGTGAGATTAAACCTCCCAACCTCTTCCCACTGGCCCCCCAGGAAATTACACACTGCC
ATGACGAAGATGATGATGAAGAGGAGGAGGAGGAGGAAGAATAAGGAGGAAAACCAAAACCCCAAGCACCCATTAAACAAGTCCTGGCAG
GACTCACAGGAACAAACGAGGTCCCTGTTAGGGTTCTACTCGGGGGAGGGAGGGGGCTCCATGAAAGGTACGTCTGAAAAGTTTCTGAAG
ATTTTATTATCATAGATACTTGTTTTGGTTTTGTGTATCTGTACTCTCTGCAGATGGTCCAAAATTGTAATGGAGTCTGTATTAGAAGAA
AATAAGGGTAAAATCAGGCTGAACTGCATGTATATGGCTCCACTGTGGCTTGTGACACTTTTAAAATCATCCGTATGTCAGTGTATCTGG
ATACACGAGGAAAAGGAAAGAGTCTCAGAGTGGAACAAAGAGTGGGAAGAGGTGATCTGTAATGTTACAAATTGTGCTATTACTCCAAGG
TCCAACTTTTCCAGTGCATTACATGGTATTGTATATCAGTGGAGAAATGTATTATTTCCATGATCAAATGTAGTCTCTGTTAAGGTCAAG
TTTTCTTTTATAAGCCTTTAATTCATCCTCAGTGACTCTGGCAAGGCTGCTTCTCTATCACTGGCTTTGCACAGAAGTATGCTCTACTTG
CGTTGCTTTAGGGCAGGATTCTATTTTGAGGGAAAAGACAGTATCCTTATTACCTTTTGTTTGTTTAATAGCACAAATGCTTATTTGTTA
TCCAAAAACAACCTCCTTCTTATCTGTGATAAATCTATAGAAAGAATTTAGCTGCAAGTGGACAAAGGAACAAGCCCCCAGAAAAGAAAG
GGAAGAACTGCCTTCTTATACTACAGAACATGCATTAGTGTGGGCTATATAGCTGTGGCTCATGCTACCCAATTCCAGATTTCTTTGTCC
TCTAAGAGTTGATTGCTGTATATTAAAATTGAACATCAGAGGATGGGAAGAGGGCTCTGTAAGCCAGAACCTTACTAAAGTAGAGGGCAC
AATCAGTGTGAATAAATTCACTTCAGAATCTCAAGTCAAGGCCAGGCACGGCGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG
ACAGGCGGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTTACCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAATTACCTGGG
CGTGGTGGTGCATGCCTGTAATCCCATCATCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAG
CCAGGATTGTGCCATTGCACTCCAGCCTGGGCAACAAGAACAAAACTCCATCTCAAAAAATAAAAATCCCAATCCCAAGTCGAAATCACC
TCTTGTTTTAAACAAGAATGAATCATTACTGTGTATGTTAGGGTATTAAAACTGTTTCACCAGTACAGTGAAAGTTGTTTCAACATTTTA
AACAAACAGTGGTTATAGACTCTTTCTTTAACCATTGTATATTTTCTTCCATTCTTGTCATTGGTCAATAGGGGAGGGTAGATTAGCTGC
TCCAGAATTCAATAAAGTGTAATATTTCTAACGGTGACTTTGACCTATTCTGTAGTACAACTGTAATAGCTATTGGTCTTCAAGTGGGTT


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FusionGenePPI for GBF1_NT5C2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
GBF1YWHAG, COPG1, KBTBD7, VCP, HDAC6, EGFR, PNPLA2, YWHAB, BIRC6, EPS15L1, NUP85, PLEC, CCAR2, NCAPH, RABL6, IRS4, IVNS1ABP, FBXW11, BTRC, SPACA1, PNKD, LYPD3, KIF4A, PUS7, RBM26, VARS, NTRK1, SRPK2, FBXO7, ZSCAN26, FOXB1, FOXG1, FOXI2, FOXL1, CDC73, TMEM206, CHRM3, GML, MILR1, DLK2, NPY2R, EPHA1, UBCNT5C2NUDT18, NME7, NT5C2, FXR2, MOB3B, NOC4L, CALM1, GNPDA1, HERC4, ADSL, API5, BTF3L4, SZRD1, DRG2, EHD4, RAD23A, USP5, WARS, ASB2, ATP5O, SDCBP, MOB1B, MOB3C, HSPBP1, PTGES3, NTRK1, FBF1, CEP19, DUSP3, SNX15, TRIM25


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with
HgeneGBF1chr10:104019873chr10:104866463ENST00000369983+3401_380541860RAB1B


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for GBF1_NT5C2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
TgeneNT5C2P49902DB00811RibavirinCytosolic purine 5'-nucleotidasesmall moleculeapproved

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RelatedDiseases for GBF1_NT5C2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneNT5C2C1961102Precursor Cell Lymphoblastic Leukemia Lymphoma1CTD_human