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Fusion gene ID: 14443 |
FusionGeneSummary for GATAD2A_ZNF93 |
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Fusion gene information | Fusion gene name: GATAD2A_ZNF93 | Fusion gene ID: 14443 | Hgene | Tgene | Gene symbol | GATAD2A | ZNF93 | Gene ID | 54815 | 81931 |
Gene name | GATA zinc finger domain containing 2A | zinc finger protein 93 | |
Synonyms | p66alpha | HPF34|HTF34|TF34|ZNF505 | |
Cytomap | 19p13.11 | 19p12 | |
Type of gene | protein-coding | protein-coding | |
Description | transcriptional repressor p66-alphaGATA zinc finger domain-containing protein 2A | zinc finger protein 93zinc finger protein 505zinc finger protein HTF34 | |
Modification date | 20180523 | 20180522 | |
UniProtAcc | Q86YP4 | P35789 | |
Ensembl transtripts involved in fusion gene | ENST00000252577, ENST00000360315, ENST00000537887, ENST00000404158, ENST00000358713, ENST00000429563, ENST00000473184, | ENST00000592613, ENST00000591366, ENST00000592160, ENST00000343769, | |
Fusion gene scores | * DoF score | 13 X 8 X 9=936 | 3 X 2 X 3=18 |
# samples | 15 | 3 | |
** MAII score | log2(15/936*10)=-2.64154602908752 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
Context | PubMed: GATAD2A [Title/Abstract] AND ZNF93 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | GATAD2A | GO:0045892 | negative regulation of transcription, DNA-templated | 12183469 |
Tgene | ZNF93 | GO:0045892 | negative regulation of transcription, DNA-templated | 25274305 |
Tgene | ZNF93 | GO:0070895 | negative regulation of transposon integration | 25274305 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | OV | TCGA-09-1667-01C | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
intron-intron | ENST00000252577 | ENST00000592613 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000252577 | ENST00000591366 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000252577 | ENST00000592160 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000252577 | ENST00000343769 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000360315 | ENST00000592613 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000360315 | ENST00000591366 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000360315 | ENST00000592160 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000360315 | ENST00000343769 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000537887 | ENST00000592613 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000537887 | ENST00000591366 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000537887 | ENST00000592160 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000537887 | ENST00000343769 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000404158 | ENST00000592613 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000404158 | ENST00000591366 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000404158 | ENST00000592160 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000404158 | ENST00000343769 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000358713 | ENST00000592613 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000358713 | ENST00000591366 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000358713 | ENST00000592160 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000358713 | ENST00000343769 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000429563 | ENST00000592613 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000429563 | ENST00000591366 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000429563 | ENST00000592160 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000429563 | ENST00000343769 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000473184 | ENST00000592613 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000473184 | ENST00000591366 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000473184 | ENST00000592160 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
intron-intron | ENST00000473184 | ENST00000343769 | GATAD2A | chr19 | 19516828 | + | ZNF93 | chr19 | 20043991 | + |
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FusionProtFeatures for GATAD2A_ZNF93 |
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Hgene | Tgene |
GATAD2A | ZNF93 |
Transcriptional repressor. Enhances MBD2-mediatedrepression. Efficient repression requires the presence of GATAD2B.{ECO:0000269|PubMed:12183469, ECO:0000269|PubMed:16415179}. | Transcription factor specifically required to represslong interspersed nuclear element 1 (L1) retrotransposons:recognizes and binds L1 sequences and repress their expression byrecruiting a repressive complex containing TRIM28/KAP1(PubMed:25274305). Not able to repress expression of all subtypesof L1 elements. Binds to the 5' end of L1PA4, L1PA5 and L1PA6subtypes, and some L1PA3 subtypes. Does not bind to L1PA7 or oldersubtypes nor at the most recently evolved L1PA2 and L1Hs. 50% ofL1PA3 elements have lost the ZNF93-binding site, explaining whyZNF93 is not able to repress their expression (PubMed:25274305).{ECO:0000269|PubMed:25274305}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for GATAD2A_ZNF93 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for GATAD2A_ZNF93 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
GATAD2A | MBD2, MBD3, HDAC1, RBBP4, RBBP7, HIST2H2AC, HIST2H2BE, HIST1H3A, HIST1H4A, CHD4, SOX2, CHD7, ELAVL1, MTA2, HDAC2, CHD3, MTA3, KRT40, OBSL1, PSME3, ZNF219, PHF20L1, FAM219A, MBD3L1, ZBTB46, CHD5, GATAD2B, MTA1, RUVBL1, KRAS, HIST1H3E, KPNA1, TCF20, CDK2AP1, HMG20A, ZMYND8, ZNF687, NABP2, RBPJ, NFATC2, ZNF592, APPBP2, CPNE5, IKZF1, DLD, TRIM25, ZNF827 | ZNF93 | FBL |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GATAD2A_ZNF93 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GATAD2A_ZNF93 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |