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Fusion gene ID: 14424 |
FusionGeneSummary for GATA3_TAF3 |
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Fusion gene information | Fusion gene name: GATA3_TAF3 | Fusion gene ID: 14424 | Hgene | Tgene | Gene symbol | GATA3 | TAF3 | Gene ID | 2625 | 83860 |
Gene name | GATA binding protein 3 | TATA-box binding protein associated factor 3 | |
Synonyms | HDR|HDRS | TAF140|TAFII-140|TAFII140 | |
Cytomap | 10p14 | 10p14 | |
Type of gene | protein-coding | protein-coding | |
Description | trans-acting T-cell-specific transcription factor GATA-3GATA-binding factor 3 | transcription initiation factor TFIID subunit 3140 kDa TATA box-binding protein-associated factorRNA polymerase II transcription factor TAFII140TAF(II)140TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDaTBP-associated f | |
Modification date | 20180523 | 20180522 | |
UniProtAcc | P23771 | Q5VWG9 | |
Ensembl transtripts involved in fusion gene | ENST00000379328, ENST00000346208, ENST00000461472, | ENST00000344293, | |
Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 6 X 3 X 5=90 |
# samples | 1 | 6 | |
** MAII score | log2(1/1*10)=3.32192809488736 | log2(6/90*10)=-0.584962500721156 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: GATA3 [Title/Abstract] AND TAF3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | GATA3 | GO:0033600 | negative regulation of mammary gland epithelial cell proliferation | 19483726 |
Hgene | GATA3 | GO:0045893 | positive regulation of transcription, DNA-templated | 19723756|19805038 |
Hgene | GATA3 | GO:0045944 | positive regulation of transcription by RNA polymerase II | 19232384|20189993|20484083 |
Hgene | GATA3 | GO:0060231 | mesenchymal to epithelial transition | 20189993 |
Hgene | GATA3 | GO:0072676 | lymphocyte migration | 19805038 |
Hgene | GATA3 | GO:2000664 | positive regulation of interleukin-5 secretion | 20554961 |
Hgene | GATA3 | GO:2000667 | positive regulation of interleukin-13 secretion | 20554961 |
Tgene | TAF3 | GO:0000122 | negative regulation of transcription by RNA polymerase II | 18549481 |
Tgene | TAF3 | GO:0043433 | negative regulation of DNA binding transcription factor activity | 18549481 |
Tgene | TAF3 | GO:0051457 | maintenance of protein location in nucleus | 15870280 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BRCA | TCGA-AR-A1AP-01A | GATA3 | chr10 | 8111561 | + | TAF3 | chr10 | 8055694 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000379328 | ENST00000344293 | GATA3 | chr10 | 8111561 | + | TAF3 | chr10 | 8055694 | + |
In-frame | ENST00000346208 | ENST00000344293 | GATA3 | chr10 | 8111561 | + | TAF3 | chr10 | 8055694 | + |
3UTR-3CDS | ENST00000461472 | ENST00000344293 | GATA3 | chr10 | 8111561 | + | TAF3 | chr10 | 8055694 | + |
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FusionProtFeatures for GATA3_TAF3 |
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Hgene | Tgene |
GATA3 | TAF3 |
Transcriptional activator which binds to the enhancer ofthe T-cell receptor alpha and delta genes. Binds to the consensussequence 5'-AGATAG-3'. Required for the T-helper 2 (Th2)differentiation process following immune and inflammatoryresponses. {ECO:0000269|PubMed:23824597}. | Transcription factor TFIID is one of the general factorsrequired for accurate and regulated initiation by RNA polymeraseII. TFIID is a multimeric protein complex that plays a centralrole in mediating promoter responses to various activators andrepressors. Required in complex with TBPL2 for the differentiationof myoblasts into myocytes. The complex replaces TFIID at specificpromoters at an early stage in the differentiation process. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000346208 | + | 5 | 6 | 137_142 | 349 | 444 | Compositional bias | Note=Poly-Ser |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000346208 | + | 5 | 6 | 322_326 | 349 | 444 | Compositional bias | Note=Poly-Thr |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000379328 | + | 5 | 6 | 137_142 | 350 | 445 | Compositional bias | Note=Poly-Ser |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000379328 | + | 5 | 6 | 322_326 | 350 | 445 | Compositional bias | Note=Poly-Thr |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000379328 | + | 5 | 6 | 344_353 | 350 | 445 | Motif | YxKxHxxxRP |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000346208 | + | 5 | 6 | 288_316 | 349 | 444 | Region | Note=Flexible linker |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000379328 | + | 5 | 6 | 288_316 | 350 | 445 | Region | Note=Flexible linker |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000346208 | + | 5 | 6 | 263_287 | 349 | 444 | Zinc finger | GATA-type 1 |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000346208 | + | 5 | 6 | 317_341 | 349 | 444 | Zinc finger | GATA-type 2 |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000379328 | + | 5 | 6 | 263_287 | 350 | 445 | Zinc finger | GATA-type 1 |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000379328 | + | 5 | 6 | 317_341 | 350 | 445 | Zinc finger | GATA-type 2 |
Tgene | >TAF3 | chr10:8111561 | chr10:8055694 | ENST00000344293 | + | 4 | 7 | 865_915 | 856 | 930 | Zinc finger | PHD-type |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >GATA3 | chr10:8111561 | chr10:8055694 | ENST00000346208 | + | 5 | 6 | 344_353 | 349 | 444 | Motif | YxKxHxxxRP |
Tgene | TAF3 | chr10:8111561 | chr10:8055694 | ENST00000344293 | + | 4 | 7 | 136_141 | 856 | 930 | Compositional bias | Note=Poly-Glu |
Tgene | TAF3 | chr10:8111561 | chr10:8055694 | ENST00000344293 | + | 4 | 7 | 163_168 | 856 | 930 | Compositional bias | Note=Poly-Glu |
Tgene | TAF3 | chr10:8111561 | chr10:8055694 | ENST00000344293 | + | 4 | 7 | 507_746 | 856 | 930 | Compositional bias | Note=Lys-rich |
Tgene | TAF3 | chr10:8111561 | chr10:8055694 | ENST00000344293 | + | 4 | 7 | 779_833 | 856 | 930 | Compositional bias | Note=Pro-rich |
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FusionGeneSequence for GATA3_TAF3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for GATA3_TAF3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
GATA3 | LMO1, LMO2, TAL1, BMI1, MDM2, HDAC3, HDAC5, TBX21, RARB, HDAC4, SP1, REPIN1, MYB, SPI1, BRCA1, USP21, FOXP3, PSMA3, CDK2, FBXW7, MAPK14, WEE1, FOXA1 | TAF3 | KHDRBS2, TAF10, TBP, TBPL2, KAT2A, TAF12, TAF13, SAP130, TAF7, CTCF, TAF5, TAF4, TAF6, TAF1, KPNA2, KPNB1, HIST3H3, HIST2H4A, MED26, NPM1, CDC23, NAP1L4, ANAPC10, CDC16, MZT1, TAF7L, TAF8, TAF11 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000346208 | + | 5 | 6 | 1_258 | 349 | 444 | TBX21 |
Hgene | GATA3 | chr10:8111561 | chr10:8055694 | ENST00000379328 | + | 5 | 6 | 1_258 | 350 | 445 | TBX21 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GATA3_TAF3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GATA3_TAF3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | GATA3 | C1840333 | Barakat syndrome | 3 | CTD_human;ORPHANET;UNIPROT |
Hgene | GATA3 | C0003873 | Rheumatoid Arthritis | 1 | CTD_human |
Hgene | GATA3 | C0019829 | Hodgkin Disease | 1 | CTD_human |
Hgene | GATA3 | C0021368 | Inflammation | 1 | CTD_human |
Hgene | GATA3 | C0023485 | Precursor B-Cell Lymphoblastic Leukemia-Lymphoma | 1 | CTD_human |
Hgene | GATA3 | C0023493 | Adult T-Cell Lymphoma/Leukemia | 1 | CTD_human |
Hgene | GATA3 | C0024667 | Animal Mammary Neoplasms | 1 | CTD_human |
Hgene | GATA3 | C0024668 | Mammary Neoplasms, Experimental | 1 | CTD_human |