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Fusion gene ID: 14409 |
FusionGeneSummary for GAS7_CHMP4A |
Fusion gene summary |
Fusion gene information | Fusion gene name: GAS7_CHMP4A | Fusion gene ID: 14409 | Hgene | Tgene | Gene symbol | GAS7 | CHMP4A | Gene ID | 8522 | 128866 |
Gene name | growth arrest specific 7 | charged multivesicular body protein 4B | |
Synonyms | - | C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 | |
Cytomap | 17p13.1 | 20q11.22 | |
Type of gene | protein-coding | protein-coding | |
Description | growth arrest-specific protein 7 | charged multivesicular body protein 4bSNF7 homolog associated with Alix 1Snf7 homologue associated with Alix 1chromatin modifying protein 4Bchromatin-modifying protein 4bhSnf7-2hVps32-2vacuolar protein-sorting-associated protein 32-2 | |
Modification date | 20180523 | 20180522 | |
UniProtAcc | O60861 | Q9BY43 | |
Ensembl transtripts involved in fusion gene | ENST00000437099, ENST00000323816, ENST00000432992, ENST00000540214, ENST00000585266, ENST00000580865, ENST00000583882, ENST00000542249, ENST00000396115, ENST00000579158, ENST00000578655, | ENST00000347519, ENST00000530996, ENST00000542700, ENST00000609024, | |
Fusion gene scores | * DoF score | 10 X 7 X 6=420 | 1 X 1 X 1=1 |
# samples | 12 | 1 | |
** MAII score | log2(12/420*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: GAS7 [Title/Abstract] AND CHMP4A [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation | Oncogene involved fusion gene, in-frame and retained their domain. |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | CHMP4A | GO:0039702 | viral budding via host ESCRT complex | 24878737 |
Tgene | CHMP4A | GO:0051260 | protein homooligomerization | 18209100 |
Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | GBM | TCGA-06-2562-01A | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000437099 | ENST00000347519 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000437099 | ENST00000530996 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000437099 | ENST00000542700 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000437099 | ENST00000609024 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
In-frame | ENST00000323816 | ENST00000347519 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000323816 | ENST00000530996 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000323816 | ENST00000542700 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000323816 | ENST00000609024 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
In-frame | ENST00000432992 | ENST00000347519 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000432992 | ENST00000530996 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000432992 | ENST00000542700 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000432992 | ENST00000609024 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
Frame-shift | ENST00000540214 | ENST00000347519 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000540214 | ENST00000530996 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000540214 | ENST00000542700 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000540214 | ENST00000609024 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
In-frame | ENST00000585266 | ENST00000347519 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000585266 | ENST00000530996 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000585266 | ENST00000542700 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000585266 | ENST00000609024 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
intron-3CDS | ENST00000580865 | ENST00000347519 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
intron-5UTR | ENST00000580865 | ENST00000530996 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
intron-5UTR | ENST00000580865 | ENST00000542700 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
intron-5UTR | ENST00000580865 | ENST00000609024 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
intron-3CDS | ENST00000583882 | ENST00000347519 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
intron-5UTR | ENST00000583882 | ENST00000530996 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
intron-5UTR | ENST00000583882 | ENST00000542700 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
intron-5UTR | ENST00000583882 | ENST00000609024 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
Frame-shift | ENST00000542249 | ENST00000347519 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000542249 | ENST00000530996 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000542249 | ENST00000542700 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000542249 | ENST00000609024 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
In-frame | ENST00000396115 | ENST00000347519 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000396115 | ENST00000530996 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000396115 | ENST00000542700 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000396115 | ENST00000609024 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
Frame-shift | ENST00000579158 | ENST00000347519 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000579158 | ENST00000530996 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000579158 | ENST00000542700 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5CDS-5UTR | ENST00000579158 | ENST00000609024 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5UTR-3CDS | ENST00000578655 | ENST00000347519 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5UTR-5UTR | ENST00000578655 | ENST00000530996 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5UTR-5UTR | ENST00000578655 | ENST00000542700 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
5UTR-5UTR | ENST00000578655 | ENST00000609024 | GAS7 | chr17 | 9923094 | - | CHMP4A | chr14 | 24681035 | - |
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FusionProtFeatures for GAS7_CHMP4A |
Main function of each fusion partner protein. (from UniProt) |
Hgene | Tgene |
GAS7 | CHMP4A |
May play a role in promoting maturation andmorphological differentiation of cerebellar neurons. | Probable core component of the endosomal sortingrequired for transport complex III (ESCRT-III) which is involvedin multivesicular bodies (MVBs) formation and sorting of endosomalcargo proteins into MVBs. MVBs contain intraluminal vesicles(ILVs) that are generated by invagination and scission from thelimiting membrane of the endosome and mostly are delivered tolysosomes enabling degradation of membrane proteins, such asstimulated growth factor receptors, lysosomal enzymes and lipids.The MVB pathway appears to require the sequential function ofESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostlydissociate from the invaginating membrane before the ILV isreleased. The ESCRT machinery also functions in topologicallyequivalent membrane fission events, such as the terminal stages ofcytokinesis and the budding of enveloped viruses (HIV-1 and otherlentiviruses). ESCRT-III proteins are believed to mediate thenecessary vesicle extrusion and/or membrane fission activities,possibly in conjunction with the AAA ATPase VPS4. Whenoverexpressed, membrane-assembled circular arrays of CHMP4Afilaments can promote or stabilize negative curvature and outwardbudding. Via its interaction with PDCD6IP involved in HIV-1p6- and p9-dependent virus release. CHMP4A/B/C are required forthe exosomal release of SDCBP, CD63 and syndecan(PubMed:22660413). {ECO:0000269|PubMed:12860994,ECO:0000269|PubMed:14505569, ECO:0000269|PubMed:14519844,ECO:0000269|PubMed:14583093, ECO:0000269|PubMed:18209100,ECO:0000269|PubMed:22660413}. |
Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | GAS7 | chr17:9923094 | chr14:24681035 | ENST00000432992 | - | 2 | 14 | 67_70 | 101 | 477 | Compositional bias | Note=Poly-Pro |
Hgene | GAS7 | chr17:9923094 | chr14:24681035 | ENST00000432992 | - | 2 | 14 | 1_62 | 101 | 477 | Domain | SH3 |
Tgene | >CHMP4A | chr17:9923094 | chr14:24681035 | ENST00000347519 | - | 0 | 6 | 155_180 | 53 | 266 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >CHMP4A | chr17:9923094 | chr14:24681035 | ENST00000609024 | - | 0 | 6 | 155_180 | 10 | 223 | Coiled coil | Ontology_term=ECO:0000255 |
Tgene | >CHMP4A | chr17:9923094 | chr14:24681035 | ENST00000609024 | - | 0 | 6 | 20_105 | 10 | 223 | Coiled coil | Ontology_term=ECO:0000255 |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000323816 | - | 3 | 15 | 309_419 | 41 | 417 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000396115 | - | 2 | 7 | 309_419 | 37 | 182 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000432992 | - | 2 | 14 | 309_419 | 101 | 477 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000437099 | - | 2 | 14 | 309_419 | 37 | 413 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000580865 | - | 1 | 10 | 309_419 | -52 | 337 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000585266 | - | 2 | 14 | 309_419 | 41 | 417 | Coiled coil | Ontology_term=ECO:0000255 |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000323816 | - | 3 | 15 | 67_70 | 41 | 417 | Compositional bias | Note=Poly-Pro |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000396115 | - | 2 | 7 | 67_70 | 37 | 182 | Compositional bias | Note=Poly-Pro |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000437099 | - | 2 | 14 | 67_70 | 37 | 413 | Compositional bias | Note=Poly-Pro |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000580865 | - | 1 | 10 | 67_70 | -52 | 337 | Compositional bias | Note=Poly-Pro |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000585266 | - | 2 | 14 | 67_70 | 41 | 417 | Compositional bias | Note=Poly-Pro |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000323816 | - | 3 | 15 | 196_456 | 41 | 417 | Domain | F-BAR |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000323816 | - | 3 | 15 | 1_62 | 41 | 417 | Domain | SH3 |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000323816 | - | 3 | 15 | 77_110 | 41 | 417 | Domain | WW |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000396115 | - | 2 | 7 | 196_456 | 37 | 182 | Domain | F-BAR |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000396115 | - | 2 | 7 | 1_62 | 37 | 182 | Domain | SH3 |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000396115 | - | 2 | 7 | 77_110 | 37 | 182 | Domain | WW |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000432992 | - | 2 | 14 | 196_456 | 101 | 477 | Domain | F-BAR |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000432992 | - | 2 | 14 | 77_110 | 101 | 477 | Domain | WW |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000437099 | - | 2 | 14 | 196_456 | 37 | 413 | Domain | F-BAR |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000437099 | - | 2 | 14 | 1_62 | 37 | 413 | Domain | SH3 |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000437099 | - | 2 | 14 | 77_110 | 37 | 413 | Domain | WW |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000580865 | - | 1 | 10 | 196_456 | -52 | 337 | Domain | F-BAR |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000580865 | - | 1 | 10 | 1_62 | -52 | 337 | Domain | SH3 |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000580865 | - | 1 | 10 | 77_110 | -52 | 337 | Domain | WW |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000585266 | - | 2 | 14 | 196_456 | 41 | 417 | Domain | F-BAR |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000585266 | - | 2 | 14 | 1_62 | 41 | 417 | Domain | SH3 |
Hgene | >GAS7 | chr17:9923094 | chr14:24681035 | ENST00000585266 | - | 2 | 14 | 77_110 | 41 | 417 | Domain | WW |
Tgene | CHMP4A | chr17:9923094 | chr14:24681035 | ENST00000347519 | - | 0 | 6 | 20_105 | 53 | 266 | Coiled coil | Ontology_term=ECO:0000255 |
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FusionGeneSequence for GAS7_CHMP4A |
For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_GAS7_ENST00000437099_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_250aa MVPPPPGEESQTVILPPGWQSYLSPQGRRYYVNTTTNGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKRAAL QALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMGFG >In-frame_GAS7_ENST00000323816_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_254aa MKPGMVPPPPGEESQTVILPPGWQSYLSPQGRRYYVNTTTNGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNK RAALQALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRP >In-frame_GAS7_ENST00000432992_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_314aa MSGARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLLEKPGMVPPPPGEESQTVILPPGWQSYLSPQ GRRYYVNTTTNGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKRAALQALRRKKRFEQQLAQTDGTLSTLEFQ REAIENATTNAEVLRTMELAAQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMGFGDDVDEDELLEELEELEQEELAQELLN >In-frame_GAS7_ENST00000585266_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_254aa MKPGMVPPPPGEESQTVILPPGWQSYLSPQGRRYYVNTTTNGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNK RAALQALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRP >In-frame_GAS7_ENST00000396115_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_250aa MVPPPPGEESQTVILPPGWQSYLSPQGRRYYVNTTTNGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYGTKNKRAAL QALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDKVDELMTDITEQQEVAQQISDAISRPMGFG |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_GAS7_ENST00000437099_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_750nt ATGGTCCCCCCTCCGCCGGGAGAAGAAAGCCAGACGGTCATCCTTCCACCTGGCTGGCAGAGCTACCTGTCGCCTCAGGGCCGGCGGTAC TATGTCAACACGACCACCAATGGGAAGAAGGAGAAAGGGCCAACCCCTGAAGAAGCAATACAGAAACTGAAGGAGACAGAGAAGATACTG ATCAAGAAACAGGAATTTTTGGAGCAGAAGATTCAACAGGAGCTACAAACAGCCAAGAAGTATGGGACCAAGAATAAGAGAGCTGCCCTA CAGGCTTTGCGGAGGAAGAAAAGATTCGAACAGCAGCTGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATT GAGAATGCCACTACCAATGCAGAAGTCCTTCGTACCATGGAGCTTGCTGCCCAAAGCATGAAGAAGGCCTACCAGGACATGGACATTGAC AAGGTAGATGAACTGATGACTGACATCACGGAACAACAGGAGGTGGCCCAGCAGATCTCAGATGCCATTTCTCGGCCTATGGGCTTTGGA GATGATGTGGATGAGGATGAACTGCTGGAGGAGCTAGAGGAGCTGGAGCAGGAGGAATTGGCCCAGGAGTTGTTAAATGTGGGCGACAAG GAAGAAGAACCCTCAGTCAAATTGCCTAGTGTACCTTCTACTCATCTGCCGGCAGGGCCAGCTCCCAAAGTGGATGAAGATGAAGAAGCA >In-frame_GAS7_ENST00000323816_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_762nt ATGAAGCCTGGAATGGTCCCCCCTCCGCCGGGAGAAGAAAGCCAGACGGTCATCCTTCCACCTGGCTGGCAGAGCTACCTGTCGCCTCAG GGCCGGCGGTACTATGTCAACACGACCACCAATGGGAAGAAGGAGAAAGGGCCAACCCCTGAAGAAGCAATACAGAAACTGAAGGAGACA GAGAAGATACTGATCAAGAAACAGGAATTTTTGGAGCAGAAGATTCAACAGGAGCTACAAACAGCCAAGAAGTATGGGACCAAGAATAAG AGAGCTGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTCGAACAGCAGCTGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAG CGTGAGGCCATTGAGAATGCCACTACCAATGCAGAAGTCCTTCGTACCATGGAGCTTGCTGCCCAAAGCATGAAGAAGGCCTACCAGGAC ATGGACATTGACAAGGTAGATGAACTGATGACTGACATCACGGAACAACAGGAGGTGGCCCAGCAGATCTCAGATGCCATTTCTCGGCCT ATGGGCTTTGGAGATGATGTGGATGAGGATGAACTGCTGGAGGAGCTAGAGGAGCTGGAGCAGGAGGAATTGGCCCAGGAGTTGTTAAAT GTGGGCGACAAGGAAGAAGAACCCTCAGTCAAATTGCCTAGTGTACCTTCTACTCATCTGCCGGCAGGGCCAGCTCCCAAAGTGGATGAA >In-frame_GAS7_ENST00000432992_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_942nt ATGTCCGGCGCTCGCTGCCGGACCCTGTACCCCTTCTCCGGGGAGCGGCACGGCCAGGGGCTGCGCTTCGCCGCGGGCGAGCTGATCACG CTGCTGCAGGTCCCGGACGGCGGCTGGTGGGAAGGCGAGAAGGAGGACGGGCTCCGTGGCTGGTTCCCGGCGAGCTACGTGCAGTTGCTG GAGAAGCCTGGAATGGTCCCCCCTCCGCCGGGAGAAGAAAGCCAGACGGTCATCCTTCCACCTGGCTGGCAGAGCTACCTGTCGCCTCAG GGCCGGCGGTACTATGTCAACACGACCACCAATGGGAAGAAGGAGAAAGGGCCAACCCCTGAAGAAGCAATACAGAAACTGAAGGAGACA GAGAAGATACTGATCAAGAAACAGGAATTTTTGGAGCAGAAGATTCAACAGGAGCTACAAACAGCCAAGAAGTATGGGACCAAGAATAAG AGAGCTGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTCGAACAGCAGCTGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAG CGTGAGGCCATTGAGAATGCCACTACCAATGCAGAAGTCCTTCGTACCATGGAGCTTGCTGCCCAAAGCATGAAGAAGGCCTACCAGGAC ATGGACATTGACAAGGTAGATGAACTGATGACTGACATCACGGAACAACAGGAGGTGGCCCAGCAGATCTCAGATGCCATTTCTCGGCCT ATGGGCTTTGGAGATGATGTGGATGAGGATGAACTGCTGGAGGAGCTAGAGGAGCTGGAGCAGGAGGAATTGGCCCAGGAGTTGTTAAAT GTGGGCGACAAGGAAGAAGAACCCTCAGTCAAATTGCCTAGTGTACCTTCTACTCATCTGCCGGCAGGGCCAGCTCCCAAAGTGGATGAA >In-frame_GAS7_ENST00000585266_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_762nt ATGAAGCCTGGAATGGTCCCCCCTCCGCCGGGAGAAGAAAGCCAGACGGTCATCCTTCCACCTGGCTGGCAGAGCTACCTGTCGCCTCAG GGCCGGCGGTACTATGTCAACACGACCACCAATGGGAAGAAGGAGAAAGGGCCAACCCCTGAAGAAGCAATACAGAAACTGAAGGAGACA GAGAAGATACTGATCAAGAAACAGGAATTTTTGGAGCAGAAGATTCAACAGGAGCTACAAACAGCCAAGAAGTATGGGACCAAGAATAAG AGAGCTGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTCGAACAGCAGCTGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAG CGTGAGGCCATTGAGAATGCCACTACCAATGCAGAAGTCCTTCGTACCATGGAGCTTGCTGCCCAAAGCATGAAGAAGGCCTACCAGGAC ATGGACATTGACAAGGTAGATGAACTGATGACTGACATCACGGAACAACAGGAGGTGGCCCAGCAGATCTCAGATGCCATTTCTCGGCCT ATGGGCTTTGGAGATGATGTGGATGAGGATGAACTGCTGGAGGAGCTAGAGGAGCTGGAGCAGGAGGAATTGGCCCAGGAGTTGTTAAAT GTGGGCGACAAGGAAGAAGAACCCTCAGTCAAATTGCCTAGTGTACCTTCTACTCATCTGCCGGCAGGGCCAGCTCCCAAAGTGGATGAA >In-frame_GAS7_ENST00000396115_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_750nt ATGGTCCCCCCTCCGCCGGGAGAAGAAAGCCAGACGGTCATCCTTCCACCTGGCTGGCAGAGCTACCTGTCGCCTCAGGGCCGGCGGTAC TATGTCAACACGACCACCAATGGGAAGAAGGAGAAAGGGCCAACCCCTGAAGAAGCAATACAGAAACTGAAGGAGACAGAGAAGATACTG ATCAAGAAACAGGAATTTTTGGAGCAGAAGATTCAACAGGAGCTACAAACAGCCAAGAAGTATGGGACCAAGAATAAGAGAGCTGCCCTA CAGGCTTTGCGGAGGAAGAAAAGATTCGAACAGCAGCTGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATT GAGAATGCCACTACCAATGCAGAAGTCCTTCGTACCATGGAGCTTGCTGCCCAAAGCATGAAGAAGGCCTACCAGGACATGGACATTGAC AAGGTAGATGAACTGATGACTGACATCACGGAACAACAGGAGGTGGCCCAGCAGATCTCAGATGCCATTTCTCGGCCTATGGGCTTTGGA GATGATGTGGATGAGGATGAACTGCTGGAGGAGCTAGAGGAGCTGGAGCAGGAGGAATTGGCCCAGGAGTTGTTAAATGTGGGCGACAAG GAAGAAGAACCCTCAGTCAAATTGCCTAGTGTACCTTCTACTCATCTGCCGGCAGGGCCAGCTCCCAAAGTGGATGAAGATGAAGAAGCA |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_GAS7_ENST00000437099_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_1189nt ATTGCTTCTGGGTTTGGGGTGTGAGAGGATGCAGAGTGGGAGACCTTAAAACCGTCTGATCTGGCTGCTAAAGCGAGTGTCTGACGACCA CCCATTAACACCAGCGAGTAGCGTTTGCTCACGGCTTTAGGATAAGAAGCCTGGAATGGTCCCCCCTCCGCCGGGAGAAGAAAGCCAGAC GGTCATCCTTCCACCTGGCTGGCAGAGCTACCTGTCGCCTCAGGGCCGGCGGTACTATGTCAACACGACCACCAATGGGAAGAAGGAGAA AGGGCCAACCCCTGAAGAAGCAATACAGAAACTGAAGGAGACAGAGAAGATACTGATCAAGAAACAGGAATTTTTGGAGCAGAAGATTCA ACAGGAGCTACAAACAGCCAAGAAGTATGGGACCAAGAATAAGAGAGCTGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTCGAACAGCA GCTGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAATGCCACTACCAATGCAGAAGTCCTTCGTAC CATGGAGCTTGCTGCCCAAAGCATGAAGAAGGCCTACCAGGACATGGACATTGACAAGGTAGATGAACTGATGACTGACATCACGGAACA ACAGGAGGTGGCCCAGCAGATCTCAGATGCCATTTCTCGGCCTATGGGCTTTGGAGATGATGTGGATGAGGATGAACTGCTGGAGGAGCT AGAGGAGCTGGAGCAGGAGGAATTGGCCCAGGAGTTGTTAAATGTGGGCGACAAGGAAGAAGAACCCTCAGTCAAATTGCCTAGTGTACC TTCTACTCATCTGCCGGCAGGGCCAGCTCCCAAAGTGGATGAAGATGAAGAAGCACTAAAGCAGTTGGCTGAGTGGGTATCCTGATAAAT CTGGGCTTGTCTTCCTAATGCTACCTTTGTTGGTCCTTTCTTCCTTAAGTGCCAAGTGCTGAGCTAAAGGAGGATAACTTTTTGGGGAAG TCATGCTGAGGGTGGTAGTGTGACCCTGCCTGAAAAAAGGGTCTCTTACCCTCCCAGCCCTGGCTCAACTCTGAAGAAGGATCTTGCTAC AGAAGGAGCCCTTGGGCTCCCTTCTCTTTGATAGCAGTTATAATGCCCTTGTTCCCAATAAAACTGGGCAGATGGAATCCTAGTGTCTAT >In-frame_GAS7_ENST00000323816_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_1219nt GATTTTCTTCCCTGGAGTGAGAAGCAGGCAGAGGATCACTCGGTGGCTGTGTATACCCTGCCTTTGGTGGTGGCACCCCAGTCAGAAACG GGACCCTGAAGCTGGGATTTAGGATGCTGGCTGTGTCACCTCGGTCTCCCCAAGATTGAACGCAAGACGAGCCATGAAGCCTGGAATGGT CCCCCCTCCGCCGGGAGAAGAAAGCCAGACGGTCATCCTTCCACCTGGCTGGCAGAGCTACCTGTCGCCTCAGGGCCGGCGGTACTATGT CAACACGACCACCAATGGGAAGAAGGAGAAAGGGCCAACCCCTGAAGAAGCAATACAGAAACTGAAGGAGACAGAGAAGATACTGATCAA GAAACAGGAATTTTTGGAGCAGAAGATTCAACAGGAGCTACAAACAGCCAAGAAGTATGGGACCAAGAATAAGAGAGCTGCCCTACAGGC TTTGCGGAGGAAGAAAAGATTCGAACAGCAGCTGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAA TGCCACTACCAATGCAGAAGTCCTTCGTACCATGGAGCTTGCTGCCCAAAGCATGAAGAAGGCCTACCAGGACATGGACATTGACAAGGT AGATGAACTGATGACTGACATCACGGAACAACAGGAGGTGGCCCAGCAGATCTCAGATGCCATTTCTCGGCCTATGGGCTTTGGAGATGA TGTGGATGAGGATGAACTGCTGGAGGAGCTAGAGGAGCTGGAGCAGGAGGAATTGGCCCAGGAGTTGTTAAATGTGGGCGACAAGGAAGA AGAACCCTCAGTCAAATTGCCTAGTGTACCTTCTACTCATCTGCCGGCAGGGCCAGCTCCCAAAGTGGATGAAGATGAAGAAGCACTAAA GCAGTTGGCTGAGTGGGTATCCTGATAAATCTGGGCTTGTCTTCCTAATGCTACCTTTGTTGGTCCTTTCTTCCTTAAGTGCCAAGTGCT GAGCTAAAGGAGGATAACTTTTTGGGGAAGTCATGCTGAGGGTGGTAGTGTGACCCTGCCTGAAAAAAGGGTCTCTTACCCTCCCAGCCC TGGCTCAACTCTGAAGAAGGATCTTGCTACAGAAGGAGCCCTTGGGCTCCCTTCTCTTTGATAGCAGTTATAATGCCCTTGTTCCCAATA >In-frame_GAS7_ENST00000432992_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_1397nt GTCCCCCGCCTGCCTGAGGACCCCCGCGCACCCCAGAGACGGCGCGCGCCCAGAGCGCGGGAGCCCGGAGCGCCGGGCGCCTGGGACCCC GCGGAGCCGCTGCCCAGCCCGTGGGGCTCGGCGGGAATGCAGGCTGCGCTGTGAACCCGGGCGCCAAGGCCATGTCCGGCGCTCGCTGCC GGACCCTGTACCCCTTCTCCGGGGAGCGGCACGGCCAGGGGCTGCGCTTCGCCGCGGGCGAGCTGATCACGCTGCTGCAGGTCCCGGACG GCGGCTGGTGGGAAGGCGAGAAGGAGGACGGGCTCCGTGGCTGGTTCCCGGCGAGCTACGTGCAGTTGCTGGAGAAGCCTGGAATGGTCC CCCCTCCGCCGGGAGAAGAAAGCCAGACGGTCATCCTTCCACCTGGCTGGCAGAGCTACCTGTCGCCTCAGGGCCGGCGGTACTATGTCA ACACGACCACCAATGGGAAGAAGGAGAAAGGGCCAACCCCTGAAGAAGCAATACAGAAACTGAAGGAGACAGAGAAGATACTGATCAAGA AACAGGAATTTTTGGAGCAGAAGATTCAACAGGAGCTACAAACAGCCAAGAAGTATGGGACCAAGAATAAGAGAGCTGCCCTACAGGCTT TGCGGAGGAAGAAAAGATTCGAACAGCAGCTGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAATG CCACTACCAATGCAGAAGTCCTTCGTACCATGGAGCTTGCTGCCCAAAGCATGAAGAAGGCCTACCAGGACATGGACATTGACAAGGTAG ATGAACTGATGACTGACATCACGGAACAACAGGAGGTGGCCCAGCAGATCTCAGATGCCATTTCTCGGCCTATGGGCTTTGGAGATGATG TGGATGAGGATGAACTGCTGGAGGAGCTAGAGGAGCTGGAGCAGGAGGAATTGGCCCAGGAGTTGTTAAATGTGGGCGACAAGGAAGAAG AACCCTCAGTCAAATTGCCTAGTGTACCTTCTACTCATCTGCCGGCAGGGCCAGCTCCCAAAGTGGATGAAGATGAAGAAGCACTAAAGC AGTTGGCTGAGTGGGTATCCTGATAAATCTGGGCTTGTCTTCCTAATGCTACCTTTGTTGGTCCTTTCTTCCTTAAGTGCCAAGTGCTGA GCTAAAGGAGGATAACTTTTTGGGGAAGTCATGCTGAGGGTGGTAGTGTGACCCTGCCTGAAAAAAGGGTCTCTTACCCTCCCAGCCCTG GCTCAACTCTGAAGAAGGATCTTGCTACAGAAGGAGCCCTTGGGCTCCCTTCTCTTTGATAGCAGTTATAATGCCCTTGTTCCCAATAAA >In-frame_GAS7_ENST00000585266_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_1367nt AGAAACATTGCATCTGGAAAGTCCAGAACAAGTTGTTAATTTCCCAGCAAGCACTGGAGCGGATTTGGAAGGAACTATGCAATGTAGTGG GTTCTTTGTGAAAGAACAGCAATGAGCAAAGCCACAGGAACCTCCGCTGGGGTGCCCAGAACACTGGCCCTGGGCTAGCGACTTGCCTCA GCCCCATTTCCCGGAGAGGCTGCCATGAAGAGGAAGCCGGCGGAGTCTTGGTGCTGAGTCTGAGGGCTTCAGGCAGGACCCAAGACTCTC CTCTGAGGTAGCAGCCCCCAGAGAAGGTTAGCTGTTCTCTGATGAAGCCTGGAATGGTCCCCCCTCCGCCGGGAGAAGAAAGCCAGACGG TCATCCTTCCACCTGGCTGGCAGAGCTACCTGTCGCCTCAGGGCCGGCGGTACTATGTCAACACGACCACCAATGGGAAGAAGGAGAAAG GGCCAACCCCTGAAGAAGCAATACAGAAACTGAAGGAGACAGAGAAGATACTGATCAAGAAACAGGAATTTTTGGAGCAGAAGATTCAAC AGGAGCTACAAACAGCCAAGAAGTATGGGACCAAGAATAAGAGAGCTGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTCGAACAGCAGC TGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAATGCCACTACCAATGCAGAAGTCCTTCGTACCA TGGAGCTTGCTGCCCAAAGCATGAAGAAGGCCTACCAGGACATGGACATTGACAAGGTAGATGAACTGATGACTGACATCACGGAACAAC AGGAGGTGGCCCAGCAGATCTCAGATGCCATTTCTCGGCCTATGGGCTTTGGAGATGATGTGGATGAGGATGAACTGCTGGAGGAGCTAG AGGAGCTGGAGCAGGAGGAATTGGCCCAGGAGTTGTTAAATGTGGGCGACAAGGAAGAAGAACCCTCAGTCAAATTGCCTAGTGTACCTT CTACTCATCTGCCGGCAGGGCCAGCTCCCAAAGTGGATGAAGATGAAGAAGCACTAAAGCAGTTGGCTGAGTGGGTATCCTGATAAATCT GGGCTTGTCTTCCTAATGCTACCTTTGTTGGTCCTTTCTTCCTTAAGTGCCAAGTGCTGAGCTAAAGGAGGATAACTTTTTGGGGAAGTC ATGCTGAGGGTGGTAGTGTGACCCTGCCTGAAAAAAGGGTCTCTTACCCTCCCAGCCCTGGCTCAACTCTGAAGAAGGATCTTGCTACAG AAGGAGCCCTTGGGCTCCCTTCTCTTTGATAGCAGTTATAATGCCCTTGTTCCCAATAAAACTGGGCAGATGGAATCCTAGTGTCTATAC >In-frame_GAS7_ENST00000396115_chr17_9923094_-_CHMP4A_ENST00000347519_chr14_24681035_-_1189nt ATTGCTTCTGGGTTTGGGGTGTGAGAGGATGCAGAGTGGGAGACCTTAAAACCGTCTGATCTGGCTGCTAAAGCGAGTGTCTGACGACCA CCCATTAACACCAGCGAGTAGCGTTTGCTCACGGCTTTAGGATAAGAAGCCTGGAATGGTCCCCCCTCCGCCGGGAGAAGAAAGCCAGAC GGTCATCCTTCCACCTGGCTGGCAGAGCTACCTGTCGCCTCAGGGCCGGCGGTACTATGTCAACACGACCACCAATGGGAAGAAGGAGAA AGGGCCAACCCCTGAAGAAGCAATACAGAAACTGAAGGAGACAGAGAAGATACTGATCAAGAAACAGGAATTTTTGGAGCAGAAGATTCA ACAGGAGCTACAAACAGCCAAGAAGTATGGGACCAAGAATAAGAGAGCTGCCCTACAGGCTTTGCGGAGGAAGAAAAGATTCGAACAGCA GCTGGCACAAACTGACGGGACATTATCCACCCTGGAGTTTCAGCGTGAGGCCATTGAGAATGCCACTACCAATGCAGAAGTCCTTCGTAC CATGGAGCTTGCTGCCCAAAGCATGAAGAAGGCCTACCAGGACATGGACATTGACAAGGTAGATGAACTGATGACTGACATCACGGAACA ACAGGAGGTGGCCCAGCAGATCTCAGATGCCATTTCTCGGCCTATGGGCTTTGGAGATGATGTGGATGAGGATGAACTGCTGGAGGAGCT AGAGGAGCTGGAGCAGGAGGAATTGGCCCAGGAGTTGTTAAATGTGGGCGACAAGGAAGAAGAACCCTCAGTCAAATTGCCTAGTGTACC TTCTACTCATCTGCCGGCAGGGCCAGCTCCCAAAGTGGATGAAGATGAAGAAGCACTAAAGCAGTTGGCTGAGTGGGTATCCTGATAAAT CTGGGCTTGTCTTCCTAATGCTACCTTTGTTGGTCCTTTCTTCCTTAAGTGCCAAGTGCTGAGCTAAAGGAGGATAACTTTTTGGGGAAG TCATGCTGAGGGTGGTAGTGTGACCCTGCCTGAAAAAAGGGTCTCTTACCCTCCCAGCCCTGGCTCAACTCTGAAGAAGGATCTTGCTAC AGAAGGAGCCCTTGGGCTCCCTTCTCTTTGATAGCAGTTATAATGCCCTTGTTCCCAATAAAACTGGGCAGATGGAATCCTAGTGTCTAT |
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FusionGenePPI for GAS7_CHMP4A |
Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
Hgene | Hgene's interactors | Tgene | Tgene's interactors |
GAS7 | PACSIN1, GAS7, ATXN1L, CREB3L2, HNRNPU, KHDRBS1, SF1, SF3A1, SFPQ, RPLP0, ABI1, CYFIP1, CYFIP2, DIAPH1, FMNL1, WAS, WASF2, APBB1IP, NCKAP1, NCKAP1L, GAPDH, WDYHV1, NCKIPSD | CHMP4A | SYT17, STAMBP, PDCD6IP, F2R, CHMP3, VPS4A, CHMP4C, PPIA, CHMP4B, CHMP5, CHMP4A, CC2D1A, TTC19, CDK13, VPS4B, EGFR, ADSS, DCK, CHRAC1, EFHD2, HSPE1, IDH1, RANBP1, RBBP7, RCN1, TALDO1, EIF6, SMARCB1, GAK, TFG, CDCA3, ARL6IP6, VAX2, NFYA, COX15 |
- Retained PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
- Lost PPIs in in-frame fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Tgene | CHMP4A | chr17:9923094 | chr14:24681035 | ENST00000347519 | - | 0 | 6 | 1_116 | 53 | 266 | phosphoinosides |
Tgene | CHMP4A | chr17:9923094 | chr14:24681035 | ENST00000609024 | - | 0 | 6 | 1_116 | 10 | 223 | phosphoinosides |
- Retained PPIs, but lost function due to frame-shift fusion. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GAS7_CHMP4A |
Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GAS7_CHMP4A |
Diseases associated with fusion partners. (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | GAS7 | C0028754 | Obesity | 1 | CTD_human |