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Fusion gene ID: 14250 |
FusionGeneSummary for GABRG3_NBPF22P |
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Fusion gene information | Fusion gene name: GABRG3_NBPF22P | Fusion gene ID: 14250 | Hgene | Tgene | Gene symbol | GABRG3 | NBPF22P | Gene ID | 2567 | 285622 |
Gene name | gamma-aminobutyric acid type A receptor gamma3 subunit | NBPF member 22, pseudogene | |
Synonyms | - | - | |
Cytomap | 15q12 | 5q14.3 | |
Type of gene | protein-coding | pseudo | |
Description | gamma-aminobutyric acid receptor subunit gamma-3GABA(A) receptor subunit gamma-3GABA(G) receptor, gamma 3gamma-aminobutyric acid (GABA) A receptor, gamma 3 | neuroblastoma breakpoint family member 22, pseudogene | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q99928 | ||
Ensembl transtripts involved in fusion gene | ENST00000333743, ENST00000555083, ENST00000554786, | ENST00000590707, | |
Fusion gene scores | * DoF score | 4 X 3 X 4=48 | 1 X 1 X 1=1 |
# samples | 5 | 1 | |
** MAII score | log2(5/48*10)=0.0588936890535686 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(1/1*10)=3.32192809488736 | |
Context | PubMed: GABRG3 [Title/Abstract] AND NBPF22P [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | PRAD | TCGA-KK-A8IF-01A | GABRG3 | chr15 | 27725933 | + | NBPF22P | chr5 | 85578549 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-3UTR | ENST00000333743 | ENST00000590707 | GABRG3 | chr15 | 27725933 | + | NBPF22P | chr5 | 85578549 | + |
5CDS-3UTR | ENST00000555083 | ENST00000590707 | GABRG3 | chr15 | 27725933 | + | NBPF22P | chr5 | 85578549 | + |
intron-3UTR | ENST00000554786 | ENST00000590707 | GABRG3 | chr15 | 27725933 | + | NBPF22P | chr5 | 85578549 | + |
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FusionProtFeatures for GABRG3_NBPF22P |
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Hgene | Tgene |
GABRG3 | NBPF22P |
GABA, the major inhibitory neurotransmitter in thevertebrate brain, mediates neuronal inhibition by binding to theGABA/benzodiazepine receptor and opening an integral chloridechannel. | Lectin that binds to various sugars: galactose > mannose= fucose > N-acetylglucosamine > N-acetylgalactosamine(PubMed:10224141). Acts as a chemoattractant, probably involved inthe regulation of cell migration (PubMed:28301481).{ECO:0000269|PubMed:10224141, ECO:0000269|PubMed:28301481}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for GABRG3_NBPF22P |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for GABRG3_NBPF22P |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
GABRG3 | TP53 | NBPF22P | AQP1, SMARCE1, RGP1, LMO3, ENKD1, PARVG |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for GABRG3_NBPF22P |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Hgene | GABRG3 | Q99928 | DB00546 | Adinazolam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved |
Hgene | GABRG3 | Q99928 | DB00842 | Oxazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved |
Hgene | GABRG3 | Q99928 | DB00898 | Ethanol | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved |
Hgene | GABRG3 | Q99928 | DB01594 | Cinolazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved |
Hgene | GABRG3 | Q99928 | DB01595 | Nitrazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved |
Hgene | GABRG3 | Q99928 | DB00683 | Midazolam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit |
Hgene | GABRG3 | Q99928 | DB01215 | Estazolam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit |
Hgene | GABRG3 | Q99928 | DB01559 | Clotiazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit |
Hgene | GABRG3 | Q99928 | DB01567 | Fludiazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit |
Hgene | GABRG3 | Q99928 | DB01588 | Prazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit |
Hgene | GABRG3 | Q99928 | DB01589 | Quazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit |
Hgene | GABRG3 | Q99928 | DB00690 | Flurazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit|investigational |
Hgene | GABRG3 | Q99928 | DB01558 | Bromazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit|investigational |
Hgene | GABRG3 | Q99928 | DB00829 | Diazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit|investigational|vet_approved |
Hgene | GABRG3 | Q99928 | DB00801 | Halazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|illicit|withdrawn |
Hgene | GABRG3 | Q99928 | DB00231 | Temazepam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|investigational |
Hgene | GABRG3 | Q99928 | DB00897 | Triazolam | Gamma-aminobutyric acid receptor subunit gamma-3 | small molecule | approved|investigational |
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RelatedDiseases for GABRG3_NBPF22P |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | GABRG3 | C0001973 | Alcoholic Intoxication, Chronic | 1 | PSYGENET |
Hgene | GABRG3 | C3711376 | Isodicentric Chromosome 15 Syndrome | 1 | CTD_human |